mRNA_H-paniculata_contig1138.881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1138.881.1
Unique NamemRNA_H-paniculata_contig1138.881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1138.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1138contigH-paniculata_contig1138:14587..22541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005340.1
Exons3
Model size642
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1138.881.1prot_H-paniculata_contig1138.881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1138 14587..21867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.6426842-CDS-H-paniculata_contig1138:14586..148851622928844.6426842-CDS-H-paniculata_contig1138:14586..14885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 14587..14885 -
1691480642.0665858-CDS-H-paniculata_contig1138:14586..148851691480642.0665858-CDS-H-paniculata_contig1138:14586..14885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 14587..14885 -
1622928844.6590545-CDS-H-paniculata_contig1138:21830..218671622928844.6590545-CDS-H-paniculata_contig1138:21830..21867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 21831..21867 -
1691480642.0779538-CDS-H-paniculata_contig1138:21830..218671691480642.0779538-CDS-H-paniculata_contig1138:21830..21867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 21831..21867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.6748884-UTR-H-paniculata_contig1138:21867..220741622928844.6748884-UTR-H-paniculata_contig1138:21867..22074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 21868..22074 -
1691480642.0944629-UTR-H-paniculata_contig1138:21867..220741691480642.0944629-UTR-H-paniculata_contig1138:21867..22074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 21868..22074 -
1622928844.6897452-UTR-H-paniculata_contig1138:22444..225411622928844.6897452-UTR-H-paniculata_contig1138:22444..22541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 22445..22541 -
1691480642.101761-UTR-H-paniculata_contig1138:22444..225411691480642.101761-UTR-H-paniculata_contig1138:22444..22541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 22445..22541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1138.881.1

>prot_H-paniculata_contig1138.881.1 ID=prot_H-paniculata_contig1138.881.1|Name=mRNA_H-paniculata_contig1138.881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MDDSSPPRKTVTGPPELPSDFQNQYRRHKDFKRHGRRQLLSVAGTAAAEA
TDHDDHGLNPHSDSDDPDAIESVRSSLSSRFEAQVGVSHPAAGAGSAEGN
GDGSAAVASLVV
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mRNA from alignment at H-paniculata_contig1138:14587..22541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1138.881.1 ID=mRNA_H-paniculata_contig1138.881.1|Name=mRNA_H-paniculata_contig1138.881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7955bp|location=Sequence derived from alignment at H-paniculata_contig1138:14587..22541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAAGACTTTTTGGCCTCTTGGGGCAACAGCACTTTGGTTTCATAGGC
TTTTCAGGGGATAGTACACCGCCAAACACGGGGACTGCATCTCCACGGTA
AGTCATTGCCAATAAACAAGACTGTTAGGGTTTACTCTCTGGTATATGTT
GGGGGTGTTGGCGCAAGAAGCGAGAAGCGGAGAGGGAGAACCAGGTGTCG
GCTGGGCAAACAAACCCGATGTACGAGCTGGAGATAACAACCCACTGTCA
ACAAAATCTCTTGCTTTGAATGAACAATTCCTCTAGCCTCTTGCTTGTTC
GCACATACATGCAACAAGGAACGTGTTCAAGTGTTCCCATTCATCGCCAA
CACACACGCGTTGCAAAACTGTTTGCTGTAACACGTGGCACCCCTAAACC
CTGACTAACGCATTTGACGATTCCGCGCGCTGCCCATTGCGCATGCCACC
CCTCCCCTTCAAAACAGGTTTACAGCCCTGAGAGTCTAAAAAGAACCCAA
AGAAGCGAAAAGGACAAATACCAGCAGTAACCCAAGTGACTGAGTGAGTC
GAACATTTGGGACGAAAGGGCGGAGGGACCAGGAGCACAGCAGCCAGCCA
ACCACTGTTTGTCAGACTTCATCCTCGCCGGTTTAGAGAGGATTAGCATG
GCCTTGTGAGACATCCGAGCTGCTATGGATGATTCTTCGCCACCACGAAA
AACTGTGACAGGTTAGAGGCCTACATAATCCTCCAATGGATCGATAACCC
CCAAAGCTCGCGAAGCAGCACTGCTCTTCCCAGTGCGAATGCAGCCTGCG
TGGCCTTTTTGCATGGCAACAAACCGGAGATTAAAGCCGCCCCTTCACAA
CCATGATATAATATGGACCACTTGAAAGTAAGGATGGTCCCTAATGCCAG
TATACAAATACAGTGTAGACCACGGGTAGACAGTCCGCATGTTGCCTGCC
CAGTCCTCTGGCACTGCTGTGCTACAGTTTATGCGTGCTGACCATCTGTC
TCGTGGGCTTATGATTGCTGTATTGCGTCACGCGGTTGTGTGTTGACACG
CGTCCTCCCCAAACACTGCCAAACGTTAAAAGTTATGTGCAAGTAGGTGT
GTAAAAATTACAGCTGCTTGCCGTTGTGTTTGCCGTGCGTGGCATATAGA
GCGTTATAGCTGTAGCTGGGGCAACATTGACAGTCCTGTGGACGAAGATG
GTTGCACGTGAGAACAGAGCCCAGCATATTTGGCGTTTACAAGTGTACGC
AGTTTATGCAGTCCAATGGTCTCGTTGTAACTTGGCAGCTACTACAACCT
AAATATACAGTCGCAATGGCAGAGAGTTGGACAAATATTTTGAAGATTTC
AACAGACTCCATGTTTACACTGCATGCATGGTAGAGCTGTGTACAGTAAT
GCCGCACACGACCTGGGAATAGACAAATAGACATAGAAAGCGCACTTGGC
CGGGTGGAATCAGATCTCAGTCCCGTCCAGGCTGAAGGAGCCAATCACAG
GAGTGTATAAGCTCCCTATATTTGACGACATATCCAGCATACCGGAAGTT
TAAAATTACAGAAGATGTGAGCGTTCATGAGCAAAGTCGCGCGAACGCTC
GGGGTGCCTGTCTCACATGACTGCCGCGCGGTGGTCTAGTCGGACCCTCG
GCCAACCGACACACGAACCCGATTTCGGGGTAAGTGTTGAGTGAAGGTTT
CCTCCTCTACCTTACGGACCAAAAGCAAATGCGAGCGTTGCCCTCTCTGC
AAAGTAGGTACATAGATACCTGGATATTTGACGAAGATAAAAGGATATTT
TGTTGTAGCGAATCCTCAATAATATTTGCAGCTCAATGCACCGCAATATG
TCACTGTATTCACAAAATGCGCAGTGAGATGAATGTGCAATACAATCACA
AATATGCAATTCGATACTATGCTAATAAAAGCTATTCTACACTAGCTGAA
GCTCTACTTCTCAACACTTGGTGTTGGAGGTTGCGAGAATTGTCGAAGAA
ATTTGTGGAGAACAATAGTTTGGAAAAAAGCATCTAAATCCTATGCCGAG
AGCTACCCGGAGAATGATGTCGTCCTCTTGAGCTATCTCCACAAGCGACG
TGTATGTAAATATATATATATTGCCACTTTGTTCTAGACATTCGAATTGT
ATGTACGTTTGTCATGTTTTTCGGTGATTTTGGTTGAGGTTCCACAACGA
AGGTACGCCAACAATACCCCCCAAAAGCCGATTGGAGCCGTTAACCCTTT
AGGAAGTTCTGACTCCCCAATCAGCGCTGGAGTGCTTGTTTACTGCGTGG
CCGTTAGGGTCAAAATTGGTGTCTTGCCCGTTCGTGCTCTGCACTAAATC
CAAGACAACAGCCGCCCCGAACGGCAAAAAACGGTTCCTCCTTTGCACCT
GAGATGCACCAATCACCTCTCTAGAGTTGGTCAGCGCATTGTGTCGACGA
ATTCGTCATTTTTCACGACTGGTCCTCAGCAAATATCTCCTTTGGCCGTT
ACGACGTCGAGTTCCTGTTAATTACTGTGAAAATTAATCGAAATGTGTAG
ATTCTAATCATGGAACCTGAAAGTTTAAGTGCAAACGTCCGCGTCTATGC
AGAGTTCCGGCCAAAGCACCATTTTGCGAAAAAAAATCTGTACTTTGGGG
TCATGTCGTTTTTTGTGGTTGGTGGAACTAACTAACGTGTCGACTCAAAT
CACAAATCACAATGTACTGTGATCACGTCAGAATTTGAATACGAACAACG
CCCAGGGTTCTTGTTTATTATTCCAATTACTATCTATAGCAGTAGATATA
ATGTGACCATGACTACGCCCGTTCAGTACTTCATCTTCTACAGTACTCAC
GAGCAACGCACACCGGTGTTGTCTGTTGTTGATTCATCTGGATTTTTTTT
TGTAGGGCTTTTACTTCGTGATCAACGAAATTTTTCTGTGTGAAGATCTA
ATGTGACGAGGAAAAAACGCGTAACACCGCCCTCGCAGTGGCTCGCTGCT
CTCGCAAACAAGCACGATGTCTACGACTTTTTTTTCTTCACGAGTCACTT
GAGTATAAACTTGAAAAAGTGTTCCGAAACGACGACTATGACGATGGCAA
CAACGATTTTGCCGTACCAATTCGGAAGCATTCTCGGCTCCACAGGGGCA
CCAATAGATTATAGAGGCACTATGGATGCACATACACGCGTGGTGTTTAG
TGGCAAAGCGCAACTTGATATCTACGGTATTAGTTTAGCATGCAGAGGGA
CAACGACAAGACAAGGAGTAGACGGGATTCGATGAGTACCCAACTGCAGG
TTCCCCCCCCATAGGCATTGAGTAGTAGTTCGGTATCGCGTAAATGTGTA
GTTGTATCATGAGGAAGGCAAAGGATGGAGCAAAGGCTGGAGGTCGAGGA
ATACAGCAGTCAATACCCCCAAGCTTGACAGTGCCGCTCTAGAAGAGGCT
GATACGACGCTACGTCAACGTAGACAAGCTACGATGGGCAGCATCTAGAC
CCAGGTTTTTTAGCGTGTCCAGAGGGTGAGGAATCACAAGACAATGCCAT
CTAATTCATTTTCGAAGGCCGATAGTGTTGGAAGTTTTCGATGAGCTACT
GCTGGAAAGATACTCGGCAATAGCTCCTCTGAAAATCCACGGCCATCCGT
CTCTCATACGATAGGTGACATCGTCTCCGGCATATTCCCCATCTGGCGGC
ACTGAGAAGTCAGAGTCCTCAGAGTTAACTGTCGCAACTCGTGTATAACA
GACGTAGCGTTGTACCAGCACTCTTTGAATATAGTGACTCTGTCAACTGG
GAGTAATTGGCTGCCGTGTTCCTCGAGCTGGTTCCTTCCATAGGCGTTCC
TCCATCATTCGACTTCCTCAATATACAACGGTACTACAGGCGGTACCGTA
CTTATTCGGTGTTGAACCTGAGCATTTTTTCTTCTCCTCTCTGGCGCCTG
TGGAGCATATCCTACAGAAAGAGACAAATCTCGGTAAGTGTCGGCAGAGG
ACAAACCTATTTTTTCACCAATGGCGTCGCCGATAGGACCCCTTACTTGA
ATTTTCGAAGTTAAGCGGCGGCTAGACGAGTCATGTTCAGGGTTGAGGAC
ATCGTACCTAAGTCCACGAAGAGTGGAGTGTCTTCCGAGGCAACGTGAAG
ATGGCCGCACACACACCTAGATACCCGAAAAATACCTCTCAAATGAAAAG
GCAAAAAAAATGCGGGCGAAAACGAGAGGAATACTCTCTGCGAGCAGGTT
GGAAATCGGTTATACTTACTAGTCTCTTTCAATACTCTAAACAGACTCTT
GAAGCAGGGAGGAGGGGTGGCGTGGAGAATAACCTATAGAAAGGGATCAA
TTTCCACGCAAGAGTCAATAGAGGACATCTGTCTCCCCTGACACAAGGGT
GGTCGGCGAAGTTTTCGAGGCCAAAGAAGAAGAGAGCGCGCACAAGTTTT
GCCACACCGTGATAAAGGAGTGTATAGCGGCTACCTGTTGCTCTTGCAAG
ATCTCTGGGCTGATTGCACCAATGCCGGCGAAACATGCGTTTCATGTTTC
AACCGGCTCGATTTACAAATCCATGCATGGCGCTGGTCACATTTTTTTTT
TTTAAACCCCCGGAAGGCTAAGGCAAACACCTTTACCGATGCTTCCATAC
CTACGAAGTATTTCTACCAAAGTGTGTCTACATTTCCTTTAACAGAACAG
AGTTATTTATTCCTTTGCGGGGTAGGCGCTGGCCACATTACACGGGCGTG
ACCGACGTTCAGAATCGCTTTGGAAGTTGGACTCTCATCAGCATATGACA
TGTTTTTCGTACAAGACTGTAGTTGCAGCGGCGTTCGTGTGGTATTTTCC
GACTCGTAGTGTCTGGCATCCAACCATTGTTGACGGGGACTGGTAACGCG
CAGTCCGGCATGGCTCATGAAAAGGACGACGGTTTTGTCGTGCGAAACGA
TTTCTGGCTTGACTCGTGGCCTGTGTATCTTGATACGGCGACTTGGATCT
AAGGCGGTATTCTTTGAGGTCGTCATATTGTAAGTGTAACATGATTCCGG
GTTTTGCTTTCACCTCAAAAATAAAAAAATGCATGCATACACGTGACATA
CTCCCTCTAACACCCTGCTATCCTTCTGTCTATATCTACAACGTGAAGCA
CAGACACAGCAGGGTATACTCTCTCCTCTATGGTACAATCGTACATATCC
ATAGCATCCATCAGCAGGAGCGGAGGATGTACTCTCTGGTGCAATGAGTA
GAGTAGGGTAGTTGTGTGTAAGTTTGTACCGCCGATCCAAACGACGATGG
GAGCAAACTATTTGAAGAAACATGGGGGTGTTTCTTTTGTGTCCTTTTTT
TTTTTTTTTCCCAGATCTCCACTATTAAAATTTTGCAATAAACAATTTGT
TCTCCCGGGGGGCGGGCGGGGGGGGGGGGGGGGTAAAACACGTTGGTCCA
ACGAGAAGGACACAACGGATTTATGTTCCACCCCGTTACCTGTGCAGAAC
ACAACCCCGCGACAAGAATTATAGACCAGTTTTGGGATGTACGTACTAGT
TTCGAGACAAAGGCCTGCGAAGATTTGGTCTCAGAGCACGCTGTACAGGT
AAAATTGTTATGTTAAGTGTACCTCACACCAAAACCCGAAGATTTAGAGA
GGTGAACACAACATTCACACAGTCGAACAGCCAGCTTCAACACGCTGCGC
CAGGAAGCGTGCGTGGCCCTGAAACGAGAGTATGCTTTGCACTCGGGAAT
ATATGCAGCGCCGCACGCTGCTCTAGGGGGGTGATAAGTTTTCAATCCAT
GTATTATAGCACATGTGTGCTGTGGTCCATGTTTCCATCCATACCTGAAT
TATGCACATGAGATGATGAAAAACATGGTGGAGTCATACTGCTTCCAACA
TGCTATCACATAAACGAGACCTTTGCCACCGCTGTGGAATTTTCCGTGCT
CCATGAGTCACGGTACTGTCACTCGATGGCGTCATTTTGCGCGTCGGTCA
TGGATATGTCAGGTCCTAGCTTGACTTAGTTCTCGCTTTTTGAGCATTGC
CGTGTATTCTAACTGTCCGGGAAAACTAGTCCGATGAAAAGCCATCGTTA
ATTCACGGTGCGATCTGGGTTTGAGCTATGAGCCCCCTCTGGACAAGTTC
CAAGCCTTGGTCCAGCCCAACCTATAGCGCTCGGGGCCGACGTCCCTCTT
GTTGCCACTACGCATCCTCCTCTCTCTTCCTGCCTATTGGCTGGCCAGCT
AGCTGTAAGACCGCCGGCGATACCTCTCGCAGGACCTTCGTGAAGGCCTT
CCGAGGCGTTTCGTGCCGGAAAAAGAGCCTAAAAGTTTGAACGACATTGA
TCCACAAAGCTACAAGAAATTCGTGACCAGCTTCAGAGGAGGAAGCGAGA
AGGATATAGAAGGTACTATCTTCTTATTATCTTCTTCCAGTTACCTGTGA
ATGTCGTCTCGATTTCCCTCTATCTTGGTGGATCGAGTGTTGCTCAGGTG
GTTTAGCTACTTTCCGATGGACTGAATGGATCGGAAGATCTTTTCCCAAG
ATCCCACCAAGGCGACCAAGGTGGTGGTTGTCGTCGGCCATGCTTGCCAC
CGATAAGAACAAAGCGGGAGGAGTACCCGCGCTGTGGAAACATGGAGGCT
AATGGACACTCAAGTTGTCAACAACGTTTCAACACACCGTTGAGGCCCCC
GTTTCAGATGGCTCCGTTTTGAATCAAATTTGCCTAATCGAAAATGGACT
TAGTTAGATGATCTCAAGTGTTTTTTAAGTACGGATTTTTATTTTATGAC
AAGAGTCAATCTGACCCGCCTTGAAAAGTAAATACCGCCTTAAATCGAGG
TACCCACGGTACAGTGATGACTGCAAACATGATCCAGTCATTGTCCATTG
CGACAGACGTTCGAGATGTCATCTATTAAAAATCCCTCGCGTACATATGT
CGTTCACTCCAAATACGTATAGCATCCAATCAGAGAGAGGGAAAAAATGT
CTGCAGCTTCCCGTTGTTCAACTTTGCCGAAAGGAACAATATGGTTGGTC
GAAGATTACTGAGGTTACGTGGATGAACGTGGGTTTGATTTCAGTTGAGG
AGGTTGCAGATGCGTGCCTACGCATTATGTCGACCATACGCCGTAAACGT
ATCCGAAACTAATTCGACAGTCGCGCCGTGTGTGACATAGCATGAATGTT
CCCCAACAGTTGTCGCCAACCTCCGAAATGTTTCGCCCATGTCACCGAAA
ATACTTTCCTTGTACAGCTACGTTACAGAGCAGATGCGGGTAATGCTACT
CAGACGCGCGAGTAATGCAGCGGTATTAATTTTGCCAAAGTCATATTCCA
GTTTAGGCTTATTCTCCTCCCCTCCCATGATCATAGGGATATGTTTACGT
GAGCAAAGGTTGTATCTTACCTCGGATCTTATGCGTACGTACAACCAATA
GGTATTCCTTATATGTTCGAATAAGATTATCTGATTTTACCTCCAAACGC
GTATTTTTGGTATATGGGAATATTTTTCGTGAGTTACTGCTTTCTTATGT
TACGCGACTGAAGCTCTTATGTTTCAGGTTTGTTGGAGTGCCAACTATTA
AGCCTCCCGCCCCCGGTCCCCGCCCCGTCTCTTCACGTCCCTCCTCTCTC
ATCCAGGCCCACCAGAGCTCCCTTCGGACTTTCAGAACCAATATCGTCGA
CACAAAGACTTCAAGCGCCACGGCCGGCGACAATTGCTATCTGTTGCAGG
CACCGCCGCCGCCGAAGCCACCGACCACGACGACCACGGCCTTAACCCCC
ACAGCGACAGCGACGACCCGGACGCGATTGAATCGGTGCGCTCCTCCCTC
TCGTCTAGGTTCGAAGCGCAGGTGGGGGTTTCCCACCCTGCAGCGGGTGC
AGGCTCGGCGGAAGGCAACGGCGACGGCAGCGCCGCAGTCGCATCGCTAG
TGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig1138:14587..22541-

>mRNA_H-paniculata_contig1138.881.1 ID=mRNA_H-paniculata_contig1138.881.1|Name=mRNA_H-paniculata_contig1138.881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1138:14587..22541- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGATTCTTCGCCACCACGAAAAACTGTGACAGATGGATGATTCTT
CGCCACCACGAAAAACTGTGACAGGCCCACCAGAGCTCCCTTCGGACTTT
CAGAACCAATATCGTCGACACAAAGACTTCAAGCGCCACGGCCGGCGACA
ATTGCTATCTGTTGCAGGCACCGCCGCCGCCGAAGCCACCGACCACGACG
ACCACGGCCTTAACCCCCACAGCGACAGCGACGACCCGGACGCGATTGAA
TCGGTGCGCTCCTCCCTCTCGTCTAGGTTCGAAGCGCAGGTGGGGGTTTC
CCACCCTGCAGCGGGTGCAGGCTCGGCGGAAGGCAACGGCGACGGCAGCG
CCGCAGTCGCATCGCTAGTGGTAGCCCACCAGAGCTCCCTTCGGACTTTC
AGAACCAATATCGTCGACACAAAGACTTCAAGCGCCACGGCCGGCGACAA
TTGCTATCTGTTGCAGGCACCGCCGCCGCCGAAGCCACCGACCACGACGA
CCACGGCCTTAACCCCCACAGCGACAGCGACGACCCGGACGCGATTGAAT
CGGTGCGCTCCTCCCTCTCGTCTAGGTTCGAAGCGCAGGTGGGGGTTTCC
CACCCTGCAGCGGGTGCAGGCTCGGCGGAAGGCAACGGCGACGGCAGCGC
CGCAGTCGCATCGCTAGTGGTA
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