mRNA_H-paniculata_contig32842.8809.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32842.8809.1
Unique NamemRNA_H-paniculata_contig32842.8809.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32842.8809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32842contigH-paniculata_contig32842:1647..1970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size297
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.5953367-UTR-H-paniculata_contig32842:1646..16731622930012.5953367-UTR-H-paniculata_contig32842:1646..1673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32842 1647..1673 +
1691481110.039487-UTR-H-paniculata_contig32842:1646..16731691481110.039487-UTR-H-paniculata_contig32842:1646..1673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32842 1647..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.6258924-CDS-H-paniculata_contig32842:1673..19701622930012.6258924-CDS-H-paniculata_contig32842:1673..1970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32842 1674..1970 +
1691481110.049838-CDS-H-paniculata_contig32842:1673..19701691481110.049838-CDS-H-paniculata_contig32842:1673..1970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32842 1674..1970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32842.8809.1prot_H-paniculata_contig32842.8809.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32842 1674..1970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32842.8809.1

>prot_H-paniculata_contig32842.8809.1 ID=prot_H-paniculata_contig32842.8809.1|Name=mRNA_H-paniculata_contig32842.8809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MEEQDDDVIRSKMSDNSISEDSEDFNLELLKRMLQREKVVRLPMGIKDIN
WKAPNASGLQHSAAIFETVANSGPHNSFVINATQSHFREWQEDNGVAAA
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mRNA from alignment at H-paniculata_contig32842:1647..1970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32842.8809.1 ID=mRNA_H-paniculata_contig32842.8809.1|Name=mRNA_H-paniculata_contig32842.8809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig32842:1647..1970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACTTCGAAGACCATTTATTGAATAATGGAAGAACAAGATGATGACGT
GATCAGGTCGAAAATGAGCGATAACTCTATATCGGAGGACTCGGAGGACT
TCAATCTGGAACTACTGAAACGAATGCTGCAACGTGAAAAGGTGGTACGG
TTGCCGATGGGTATAAAGGACATCAATTGGAAAGCACCGAATGCATCCGG
CCTCCAACATTCCGCCGCGATATTCGAAACGGTAGCAAATAGCGGCCCTC
ACAATTCGTTCGTAATAAACGCAACTCAGTCACACTTTCGGGAGTGGCAA
GAGGACAACGGAGTTGCTGCTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig32842:1647..1970+

>mRNA_H-paniculata_contig32842.8809.1 ID=mRNA_H-paniculata_contig32842.8809.1|Name=mRNA_H-paniculata_contig32842.8809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig32842:1647..1970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAACAAGATGATGACGTGATCAGGTCGAAAATGAGCGATAACTC
TATATCGGAGGACTCGGAGGACTTCAATCTGGAACTACTGAAACGAATGC
TGCAACGTGAAAAGGTGGTACGGTTGCCGATGGGTATAAAGGACATCAAT
TGGAAAGCACCGAATGCATCCGGCCTCCAACATTCCGCCGCGATATTCGA
AACGGTAGCAAATAGCGGCCCTCACAATTCGTTCGTAATAAACGCAACTC
AGTCACACTTTCGGGAGTGGCAAGAGGACAACGGAGTTGCTGCTGCCATG
GAAGAACAAGATGATGACGTGATCAGGTCGAAAATGAGCGATAACTCTAT
ATCGGAGGACTCGGAGGACTTCAATCTGGAACTACTGAAACGAATGCTGC
AACGTGAAAAGGTGGTACGGTTGCCGATGGGTATAAAGGACATCAATTGG
AAAGCACCGAATGCATCCGGCCTCCAACATTCCGCCGCGATATTCGAAAC
GGTAGCAAATAGCGGCCCTCACAATTCGTTCGTAATAAACGCAACTCAGT
CACACTTTCGGGAGTGGCAAGAGGACAACGGAGTTGCTGCTGCC
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