mRNA_H-paniculata_contig32825.8805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32825.8805.1
Unique NamemRNA_H-paniculata_contig32825.8805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32825.8805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32825contigH-paniculata_contig32825:421..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32825.8805.1prot_H-paniculata_contig32825.8805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32825 467..766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.137749-UTR-H-paniculata_contig32825:420..4661622930012.137749-UTR-H-paniculata_contig32825:420..466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32825 421..466 +
1691481109.8396738-UTR-H-paniculata_contig32825:420..4661691481109.8396738-UTR-H-paniculata_contig32825:420..466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32825 421..466 +
1622930012.1649213-UTR-H-paniculata_contig32825:766..9981622930012.1649213-UTR-H-paniculata_contig32825:766..998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32825 767..998 +
1691481109.855144-UTR-H-paniculata_contig32825:766..9981691481109.855144-UTR-H-paniculata_contig32825:766..998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32825 767..998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.1507668-CDS-H-paniculata_contig32825:466..7661622930012.1507668-CDS-H-paniculata_contig32825:466..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32825 467..766 +
1691481109.8477957-CDS-H-paniculata_contig32825:466..7661691481109.8477957-CDS-H-paniculata_contig32825:466..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32825 467..766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32825.8805.1

>prot_H-paniculata_contig32825.8805.1 ID=prot_H-paniculata_contig32825.8805.1|Name=mRNA_H-paniculata_contig32825.8805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MLPENSVSASQNTSELNSTCTPLPHFPLLPENNVGASQDTDDPFYTSKAP
PLLSAVLLEKDVSASHDTLEFFSTCTVPPSQRDYCKMMCFLPMIQRSSH*
back to top

mRNA from alignment at H-paniculata_contig32825:421..998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32825.8805.1 ID=mRNA_H-paniculata_contig32825.8805.1|Name=mRNA_H-paniculata_contig32825.8805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig32825:421..998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGAACCTTGGTAGACGTCCAAGCCGGCCCCAGCACCCGATGCGATGT
TGCCGGAAAACAGCGTCTCAGCTTCCCAGAATACATCGGAGTTGAATTCA
ACATGCACGCCTCTACCCCATTTCCCGTTGTTGCCGGAGAACAATGTTGG
CGCTTCCCAGGACACAGATGATCCGTTCTACACATCCAAAGCCCCCCCCT
TGCTTTCTGCAGTATTGTTGGAGAAGGACGTTTCCGCTTCCCACGATACT
CTGGAGTTTTTTTCAACATGCACCGTACCCCCTTCTCAGCGAGATTATTG
TAAAATGATGTGTTTCCTCCCCATGATACAACGGAGCTCCCACTAACGAA
AGCTGCCCCGCCGCCGCCACCACAAGCGCTATTGCCGGCAAAAATTGTCA
ATCCTTCCCACAACACGGTGGAGCTACTGACGACATGAAGAGCTCCACCG
TTCCCCTCGGCGGCGACGTTGCCGATAAACGACGTCTGGTAGAACGACAA
GCTCGATCCGCCCGAAGTGATCGCTCCACCGTAGGTTGCATTGCCATTGC
TGAATGTCATATGACTGACATCCAAGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig32825:421..998+

>mRNA_H-paniculata_contig32825.8805.1 ID=mRNA_H-paniculata_contig32825.8805.1|Name=mRNA_H-paniculata_contig32825.8805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig32825:421..998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCCGGAAAACAGCGTCTCAGCTTCCCAGAATACATCGGAGTTGAA
TTCAACATGCACGCCTCTACCCCATTTCCCGTTGTTGCCGGAGAACAATG
TTGGCGCTTCCCAGGACACAGATGATCCGTTCTACACATCCAAAGCCCCC
CCCTTGCTTTCTGCAGTATTGTTGGAGAAGGACGTTTCCGCTTCCCACGA
TACTCTGGAGTTTTTTTCAACATGCACCGTACCCCCTTCTCAGCGAGATT
ATTGTAAAATGATGTGTTTCCTCCCCATGATACAACGGAGCTCCCACTAA
ATGTTGCCGGAAAACAGCGTCTCAGCTTCCCAGAATACATCGGAGTTGAA
TTCAACATGCACGCCTCTACCCCATTTCCCGTTGTTGCCGGAGAACAATG
TTGGCGCTTCCCAGGACACAGATGATCCGTTCTACACATCCAAAGCCCCC
CCCTTGCTTTCTGCAGTATTGTTGGAGAAGGACGTTTCCGCTTCCCACGA
TACTCTGGAGTTTTTTTCAACATGCACCGTACCCCCTTCTCAGCGAGATT
ATTGTAAAATGATGTGTTTCCTCCCCATGATACAACGGAGCTCCCACTAA
back to top