mRNA_H-paniculata_contig3275.8789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3275.8789.1
Unique NamemRNA_H-paniculata_contig3275.8789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3275.8789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3275contigH-paniculata_contig3275:4783..4980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size199
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.9466856-CDS-H-paniculata_contig3275:4782..49681622930009.9466856-CDS-H-paniculata_contig3275:4782..4968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 4783..4968 +
1691481108.9319768-CDS-H-paniculata_contig3275:4782..49681691481108.9319768-CDS-H-paniculata_contig3275:4782..4968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 4783..4968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.9662006-UTR-H-paniculata_contig3275:4968..49801622930009.9662006-UTR-H-paniculata_contig3275:4968..4980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3275 4969..4980 +
1691481108.9423504-UTR-H-paniculata_contig3275:4968..49801691481108.9423504-UTR-H-paniculata_contig3275:4968..4980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3275 4969..4980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3275.8789.1prot_H-paniculata_contig3275.8789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3275 4783..4968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3275.8789.1

>prot_H-paniculata_contig3275.8789.1 ID=prot_H-paniculata_contig3275.8789.1|Name=mRNA_H-paniculata_contig3275.8789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
IVGRVGRGTVLSTEGENCLEDTLKFSAALHLGLNRDDLKEATVALCSDNR
PVPWDPALESG*
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mRNA from alignment at H-paniculata_contig3275:4783..4980+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3275.8789.1 ID=mRNA_H-paniculata_contig3275.8789.1|Name=mRNA_H-paniculata_contig3275.8789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig3275:4783..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTTGGTAGGGTTGGCCGGGGTACCGTTCTATCGACAGAGGGAGAAAA
TTGTCTCGAAGACACGTTGAAATTTTCTGCAGCTCTACACCTGGGCCTGA
ATAGAGATGACCTGAAAGAGGCGACTGTAGCACTCTGTAGCGACAACCGA
CCAGTTCCATGGGACCCTGCATTAGAGTCCGGCTGAAAATGACTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3275:4783..4980+

>mRNA_H-paniculata_contig3275.8789.1 ID=mRNA_H-paniculata_contig3275.8789.1|Name=mRNA_H-paniculata_contig3275.8789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig3275:4783..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTTGGTAGGGTTGGCCGGGGTACCGTTCTATCGACAGAGGGAGAAAA
TTGTCTCGAAGACACGTTGAAATTTTCTGCAGCTCTACACCTGGGCCTGA
ATAGAGATGACCTGAAAGAGGCGACTGTAGCACTCTGTAGCGACAACCGA
CCAGTTCCATGGGACCCTGCATTAGAGTCCGGCTGAATAGTTGGTAGGGT
TGGCCGGGGTACCGTTCTATCGACAGAGGGAGAAAATTGTCTCGAAGACA
CGTTGAAATTTTCTGCAGCTCTACACCTGGGCCTGAATAGAGATGACCTG
AAAGAGGCGACTGTAGCACTCTGTAGCGACAACCGACCAGTTCCATGGGA
CCCTGCATTAGAGTCCGGCTGA
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