mRNA_H-paniculata_contig32734.8785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32734.8785.1
Unique NamemRNA_H-paniculata_contig32734.8785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 4.820e-68
Identity = 108/124 (87.10%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +GS+SSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYM+PKD G A WKEGPYWMTLHKLWRRMAE+DYRTA+KA+YVLHRLARGTT ESW YFR TL +MRR+EDKGTKS YFSRRVI
Sbjct:  296 KGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVI 419
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.160e-67
Identity = 108/124 (87.10%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +GS+SSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYM+PKD G A WKEGPYWMTLHKLWRRMAE+DYRTA+KA+YVLHRLARGTT ESW YFR TL +MRR+EDKGTKS YFSRRVI
Sbjct:  331 KGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVI 454
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI)

HSP 1 Score: 92.8 bits (229), Expect = 7.390e-20
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   10 VSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMR 321
            +SSD+E T++KATRP+++ AKRKHV  ++ A+ + FP ++  + +     +EGPY M L KLWR+M   D+RT+ K+LY+LHRLA  T+ ES+ +F  T  ++R
Sbjct:   84 LSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLY-FPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELR 186
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-13
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KATRPD+ P K KHV  L+       P Y               Y   L KLW +MAEKD+RT  K+LY+LHR +     E     +  L ++RR  D   K  YF+ + +
Sbjct:  250 KGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQL 360
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A6S8JKL4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKL4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.890e-13
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KAT+PD+ PAK KHV  L+       P Y               Y   L KLW +M EKD+RT  KALYVLHR +     E     +  L ++RR +D   K  +F+ + +
Sbjct:  103 KGLTSSELEQVMLKATKPDDTPAKGKHVERLVGVTYQISPRY-------------DIYDAVLRKLWGKMCEKDWRTTMKALYVLHRFSADGAPEHAASLKARLRELRRTKDPKRKDKFFNSKQL 213
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.040e-13
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWM---TLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KATRPD+ P K KHV  L+                G+ Y   G Y +    L KLW +MAEKD+RT  KALY+LHR +     +     +  L ++RR  D   K  YF+ + +
Sbjct:  282 KGLTSSELEQVMLKATRPDDQPVKGKHVERLV----------------GVTYQISGRYDIYDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQL 392
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.300e-13
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWM---TLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KATRPD+ P K KH   L+                G+ Y   G Y +    L KLW +MAEKD+RT  KALY+LHR +   + +     +  + ++RR  D   K  +FS +++
Sbjct:   34 KGLTSSELEQVMLKATRPDDTPVKGKHAERLV----------------GVTYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLL 144
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-12
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KATRPD+ P K KH   L+         Y               Y   L KLW +MAEKD+RT  KALY+LHR +   + E     +  + ++RR  D   K  +FS +++
Sbjct:  224 KGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISARY-------------DIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLL 334
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.450e-12
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWM---TLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRREEDKGTKSLYFSRRVI 372
            +G  SS+LE+ ++KAT+P++ P K KHV  L+                G+ Y   G Y +    L KLW +MAEKD+RT  KALYVLHR +     +     +  L ++RR  D   K  YF+ + +
Sbjct:   79 KGLTSSELEQVMLKATQPNDAPVKGKHVERLV----------------GVTYQISGRYDIYDAVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQL 189
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BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Match: A0A7S3ZJC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJC3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.470e-12
Identity = 50/128 (39.06%), Postives = 63/128 (49.22%), Query Frame = 1 
Query:    1 QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGMAYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFRMTLAQMRRE----EDKGTKSLYFSRRVI 372
            + S+SSD E+  +KATRPD+   K KHV  +  +   AF  Y  P  +        PY   LHK W R AE D R+  KA+YVLHRLA        K F   LA   RE      K T + YF R+ +
Sbjct:   51 KASMSSDFEQAFLKATRPDSQAPKPKHVESIALSIG-AFEAYTSPSCD--------PYGSLLHKAWSRCAETDARSTTKAIYVLHRLASSPVCCGEKEF-AGLANAYRELCGQVSKKTHTHYFDRKAV 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32734.8785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LGM3_ECTSI4.820e-6887.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L695_9PHAE3.160e-6787.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H6WB97_VAULI7.390e-2045.19ENTH domain-containing protein n=1 Tax=Vaucheria l... [more]
B7G2T5_PHATC1.080e-1336.29Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6S8JKL4_9STRA1.890e-1336.29Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4VB79_9STRA2.040e-1336.22Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FBW9_9STRA8.300e-1334.65ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A448ZTH1_9STRA1.300e-1234.68ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7R9ZH59_9STRA1.450e-1235.43Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3ZJC3_9STRA5.470e-1239.06Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32734contigH-paniculata_contig32734:510..1888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1.1e-57
Seed eggNOG ortholog2880.D8LGM3
Hectar predicted targeting categoryother localisation
EggNOG OGs2ECB5@1,2SI7J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32734.8785.1prot_H-paniculata_contig32734.8785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32734 510..1888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.5187616-CDS-H-paniculata_contig32734:509..6651622930009.5187616-CDS-H-paniculata_contig32734:509..665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 510..665 -
1691481108.7489061-CDS-H-paniculata_contig32734:509..6651691481108.7489061-CDS-H-paniculata_contig32734:509..665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 510..665 -
1622930009.5336812-CDS-H-paniculata_contig32734:963..10411622930009.5336812-CDS-H-paniculata_contig32734:963..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 964..1041 -
1691481108.7574785-CDS-H-paniculata_contig32734:963..10411691481108.7574785-CDS-H-paniculata_contig32734:963..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 964..1041 -
1622930009.550164-CDS-H-paniculata_contig32734:1750..18881622930009.550164-CDS-H-paniculata_contig32734:1750..1888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 1751..1888 -
1691481108.7650049-CDS-H-paniculata_contig32734:1750..18881691481108.7650049-CDS-H-paniculata_contig32734:1750..1888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32734 1751..1888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32734.8785.1

>prot_H-paniculata_contig32734.8785.1 ID=prot_H-paniculata_contig32734.8785.1|Name=mRNA_H-paniculata_contig32734.8785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
QGSVSSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMDPKDEGM
AYWKEGPYWMTLHKLWRRMAEKDYRTAAKALYVLHRLARGTTTESWKYFR
MTLAQMRREEDKGTKSLYFSRRVI
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mRNA from alignment at H-paniculata_contig32734:510..1888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32734.8785.1 ID=mRNA_H-paniculata_contig32734.8785.1|Name=mRNA_H-paniculata_contig32734.8785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-paniculata_contig32734:510..1888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGAGCGTTTCCTCGGACCTCGAGAAAACGTTGATCAAGGCCACGAG
ACCGGATAATGACCCGGCCAAGCGGAAGCACGTGAACCTCCTGCTCCAAG
CCGCCGAGCACGCCTTCCCGGTGTACATGGATCCCAAGGTATTTATTTTG
AGACGTCCTTTTCATTATTTTGTTGGGAAGTACCCAGGTAGGCAGACCGC
GACTACGCCAGATGGCGGCGACGGTGTTTGTTCGATGTCGCCGTACCCAC
CTATGGTGTAACCCTCGCACGCGGACTCGCTGCGTTCGTATTCATGTACA
GCAGGAAAAGGAAGGAGATAAGAAAGTACAGCCTGCGTTGCATGATAAGC
AAATCTCATTTCGTGGTGAGGCTGGAAACCTTCTCCTGGCGAGAATTATG
AAGCAGTACCGTTTCTTAGCTTTTTTATATAGGATATAGTGTATGGGGCC
ACAATTTAAGCCCCCCGGTTCTTATGGGTGAGCAAAAAGTAAGAAGGCTT
TTTTTTTTTTTTTTCTGTTTGGAGTGGTTTCCGGTCAGTTGGCCCGTGCT
GTAGAGTGTTTCCGCGTCACGTGACATGTTGGATTAAATCAGAATTATCA
TTATTATTAGTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTATCGTCATATGTTCAAGTACTGCTGC
TGATGCTAATTAACATTTTCTACTGTGGTGTAGTCCCCATGTTCATTTTT
TTGCCGCTTTTTAATGCGTCGTCATTTTTCGTTTCTATCTTTTGTATATG
GGGGGGGGGGGTCATGTGGTTATTGTCCACGTATTGCGTTTTTGCAGGAC
GAGGGCATGGCCTACTGGAAGGAAGGCCCATACTGGATGACTCTGCACAA
GCTCTGGAGGAGGATGGCAGAAAAGGTCCAACATGTAGTGTATATATATA
TATATATATTGGTGTGGAGAATGACCTATTGAAAAGGGACAATTCCCGCA
AGTGTCCTAGAGGACGAAGAACCCTTATGTCACATGAATAGTTGAAAGGC
GCGCCGTGTGTCAAAAGAGATTTTGAACTACGTTAAGGGTGATAACCATA
ATGCAAATTAGGTTAACTTACAGTAACCTTGAACTAAAGAGTCAGACGTT
CATCTATCTTCTTTTTCACAGTCTTGTTTTTAATATATTTAAACATTTGT
CTGTCCTTGTTTCGAATAAATAGGACTACCGTACGGCCGCCAAGGCGCTA
TATGTGCTTCATCGCCTGGCTAGAGGCACGACCACGGAGAGCTGGAAGTA
CTTTAGGATGACGCTGGCTCAGATGCGCCGAGAGGAAGATAAGGGCACGA
AGAGCCTCTACTTCAGCCGCCGAGTCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig32734:510..1888-

>mRNA_H-paniculata_contig32734.8785.1 ID=mRNA_H-paniculata_contig32734.8785.1|Name=mRNA_H-paniculata_contig32734.8785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig32734:510..1888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGAGCGTTTCCTCGGACCTCGAGAAAACGTTGATCAAGGCCACGAG
ACCGGATAATGACCCGGCCAAGCGGAAGCACGTGAACCTCCTGCTCCAAG
CCGCCGAGCACGCCTTCCCGGTGTACATGGATCCCAAGCAGGGGAGCGTT
TCCTCGGACCTCGAGAAAACGTTGATCAAGGCCACGAGACCGGATAATGA
CCCGGCCAAGCGGAAGCACGTGAACCTCCTGCTCCAAGCCGCCGAGCACG
CCTTCCCGGTGTACATGGATCCCAAGGACGAGGGCATGGCCTACTGGAAG
GAAGGCCCATACTGGATGACTCTGCACAAGCTCTGGAGGAGGATGGCAGA
AAAGGACGAGGGCATGGCCTACTGGAAGGAAGGCCCATACTGGATGACTC
TGCACAAGCTCTGGAGGAGGATGGCAGAAAAGGACTACCGTACGGCCGCC
AAGGCGCTATATGTGCTTCATCGCCTGGCTAGAGGCACGACCACGGAGAG
CTGGAAGTACTTTAGGATGACGCTGGCTCAGATGCGCCGAGAGGAAGATA
AGGGCACGAAGAGCCTCTACTTCAGCCGCCGAGTCATCGACTACCGTACG
GCCGCCAAGGCGCTATATGTGCTTCATCGCCTGGCTAGAGGCACGACCAC
GGAGAGCTGGAAGTACTTTAGGATGACGCTGGCTCAGATGCGCCGAGAGG
AAGATAAGGGCACGAAGAGCCTCTACTTCAGCCGCCGAGTCATC
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