mRNA_H-paniculata_contig327.8776.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig327.8776.1
Unique NamemRNA_H-paniculata_contig327.8776.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig327.8776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig327contigH-paniculata_contig327:1622..2113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.3296716-CDS-H-paniculata_contig327:1621..20591622930008.3296716-CDS-H-paniculata_contig327:1621..2059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig327 1622..2059 +
1691481108.403568-CDS-H-paniculata_contig327:1621..20591691481108.403568-CDS-H-paniculata_contig327:1621..2059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig327 1622..2059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.3439975-UTR-H-paniculata_contig327:2059..21131622930008.3439975-UTR-H-paniculata_contig327:2059..2113Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig327 2060..2113 +
1691481108.411497-UTR-H-paniculata_contig327:2059..21131691481108.411497-UTR-H-paniculata_contig327:2059..2113Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig327 2060..2113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig327.8776.1prot_H-paniculata_contig327.8776.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig327 1622..2059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig327.8776.1

>prot_H-paniculata_contig327.8776.1 ID=prot_H-paniculata_contig327.8776.1|Name=mRNA_H-paniculata_contig327.8776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
HSCTTFHQFNLEKKGVRDAVTRHPLLSVLHENRDRGFPSTLVVSENIPIG
GQELNPNVTHNNVPPIRFAVTLHYLQHNQPCTQSGQYYCINCASLVAPKA
TNVHHPRAGFSLSKPHNQPIESITIILGGVICKYCSINTYHIQSY*
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mRNA from alignment at H-paniculata_contig327:1622..2113+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig327.8776.1 ID=mRNA_H-paniculata_contig327.8776.1|Name=mRNA_H-paniculata_contig327.8776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig327:1622..2113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTCATGTACTACCTTCCATCAATTTAACCTCGAAAAAAAGGGGGTGAG
AGATGCTGTCACTCGTCATCCATTATTATCAGTCCTGCACGAAAACCGGG
ATCGAGGTTTCCCCTCTACATTAGTAGTATCGGAGAATATCCCTATCGGA
GGACAAGAGCTTAACCCCAACGTCACACATAATAATGTCCCACCCATTCG
CTTCGCGGTAACGCTGCACTACTTGCAACACAACCAACCATGCACCCAAT
CAGGCCAATATTATTGCATCAACTGTGCCTCGCTGGTGGCTCCTAAAGCT
ACTAACGTCCACCACCCACGAGCGGGTTTTTCCCTATCAAAACCCCACAA
TCAACCCATAGAATCGATAACAATAATACTAGGCGGGGTCATTTGTAAAT
ACTGTAGTATAAATACGTACCATATCCAAAGCTACTGAGCCGGTATTTCC
TCCCAAAAGAGCCTCTTCTTTTCCTCATAATAAGAAACATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig327:1622..2113+

>mRNA_H-paniculata_contig327.8776.1 ID=mRNA_H-paniculata_contig327.8776.1|Name=mRNA_H-paniculata_contig327.8776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig327:1622..2113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTCATGTACTACCTTCCATCAATTTAACCTCGAAAAAAAGGGGGTGAG
AGATGCTGTCACTCGTCATCCATTATTATCAGTCCTGCACGAAAACCGGG
ATCGAGGTTTCCCCTCTACATTAGTAGTATCGGAGAATATCCCTATCGGA
GGACAAGAGCTTAACCCCAACGTCACACATAATAATGTCCCACCCATTCG
CTTCGCGGTAACGCTGCACTACTTGCAACACAACCAACCATGCACCCAAT
CAGGCCAATATTATTGCATCAACTGTGCCTCGCTGGTGGCTCCTAAAGCT
ACTAACGTCCACCACCCACGAGCGGGTTTTTCCCTATCAAAACCCCACAA
TCAACCCATAGAATCGATAACAATAATACTAGGCGGGGTCATTTGTAAAT
ACTGTAGTATAAATACGTACCATATCCAAAGCTACTGACATTCATGTACT
ACCTTCCATCAATTTAACCTCGAAAAAAAGGGGGTGAGAGATGCTGTCAC
TCGTCATCCATTATTATCAGTCCTGCACGAAAACCGGGATCGAGGTTTCC
CCTCTACATTAGTAGTATCGGAGAATATCCCTATCGGAGGACAAGAGCTT
AACCCCAACGTCACACATAATAATGTCCCACCCATTCGCTTCGCGGTAAC
GCTGCACTACTTGCAACACAACCAACCATGCACCCAATCAGGCCAATATT
ATTGCATCAACTGTGCCTCGCTGGTGGCTCCTAAAGCTACTAACGTCCAC
CACCCACGAGCGGGTTTTTCCCTATCAAAACCCCACAATCAACCCATAGA
ATCGATAACAATAATACTAGGCGGGGTCATTTGTAAATACTGTAGTATAA
ATACGTACCATATCCAAAGCTACTGA
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