mRNA_H-paniculata_contig1136.875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1136.875.1
Unique NamemRNA_H-paniculata_contig1136.875.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: D8LDV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDV9_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 4.200e-99
Identity = 142/199 (71.36%), Postives = 169/199 (84.92%), Query Frame = 1 
Query:    1 TAIFAEAVAETALESVMIVGFVGIMARLTKEFVAP-KYIEVARLAMWTAVVFLSGAATAGPKRYLETSQLFNIENPISEDWYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQV 594
            T +  EA+ ETALES +IVGFVG    L   +++  K+ EVARLA+WTA VF+SGAATAGPK++LE SQLFNI+ PI +DWY NL+KP WNPPNW+FPIMW+PLKILQVFACYE+WDKL  R+  A+PV+ Y VYKSLGDVWNKVFFERRRLK+GT VISLYY++L AGIK+FFDVS+RAGYLFAPTAAWV++AT LQV
Sbjct:   93 TVVLVEALVETALESGLIVGFVGAAEYLAARYLSDTKFSEVARLALWTAAVFVSGAATAGPKKWLEKSQLFNIDVPIGKDWYTNLRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDKLETRSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLTLLAGIKVFFDVSDRAGYLFAPTAAWVTIATCLQV 291
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: R1FSF7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FSF7_EMIHU)

HSP 1 Score: 115 bits (289), Expect = 1.760e-28
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:  226 ISEDWYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQV 594
            +S +WY+ L KP WNPP WLFP+MW+P+K+ Q  A    W  L  R + A PV+ + ++ SLGD+WN  FF ++R   G  VI  ++ +L A   L    S  AG L AP  AWV+VA AL +
Sbjct:  110 LSPEWYDKLVKPNWNPPAWLFPVMWIPIKLAQTAAAGITWRALGHRTFSAAPVVMFLLHLSLGDIWNVQFFLKQRKLTGLLVIYTFWAALIASAVLIGRTSLLAGALVAPGVAWVAVAAALNL 232
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A7S0IPT2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPT2_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.790e-27
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:  217 ENPISEDWYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQV 594
            +  +S +WY  + KP WNPP WLFP+MW+PLK+ Q       W  L  + +++  +I++ ++ +LGDVWN  FF ++R+  G  VI  ++  L A   L  +VS  AG L APT AWV VA AL +
Sbjct:  104 DETLSPEWYGKVVKPSWNPPAWLFPVMWIPLKLAQTVGAGIAWRALDHKVFRSPAIIAFVMHLTLGDVWNSQFFVKQRILTGLLVIYSFWGVLVAATALLTNVSPVAGALVAPTVAWVFVAAALNL 229
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: B7GCI8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCI8_PHATC)

HSP 1 Score: 114 bits (284), Expect = 2.500e-27
Identity = 70/198 (35.35%), Postives = 111/198 (56.06%), Query Frame = 1 
Query:   31 TALESVMIVGFVGIMARLTKEFVAP---KYIEVARLAMWTA---VVFLSGAATAGPKRYLE--TSQLFNIE-NPISEDWYNNLQKPWWNPPNWLFPIMW-VPLKILQVFACYELWDKLAGRNYKAIPVIS-YAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            TALE++ +VG +     L   F  P   K +    +  WT+   V+F S A  +     +   ++Q+F     P   +WY+NL+KPW+NPP W+FP+MW +  K  Q++A   +  + +   Y   P +S Y  + SLGD WN++FF  +R++LG+ VI+ ++  L    KLF ++   AGYL  PT AWV+VA++L 
Sbjct:   80 TALETIGLVGVIAGTKTLASRFSVPFLTKMVGGLPIVQWTSLGIVIFGSSAVKSVTDGGVSVASAQVFRPNVTPGDPNWYSNLKKPWFNPPAWVFPVMWLIVAKPTQLWAVSRVLKRTSTIPYW--PTLSVYCAHLSLGDTWNQIFFGCQRIRLGSGVITAFWGMLAFSSKLFANIDPTAGYLLLPTLAWVTVASSLN 275
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A7S3UZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZZ5_HETAK)

HSP 1 Score: 112 bits (279), Expect = 2.500e-26
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:  238 WYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            WY  L KP WNPP+WLFP+MW+PLK LQV     +W +  GR +    V+++  Y++LGD+WN +FF++RR+  G   I   Y SL A    F  V   AG L  PT  W+ VA++L 
Sbjct:  181 WYRGLAKPAWNPPDWLFPVMWIPLKTLQVAGAALVW-RAVGRRWAHPAVLAFLGYQALGDLWNALFFDQRRIGFGLVAIYALYASLAASTAAFAQVRPLAGALVLPTNIWLFVASSLN 297
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A150H3I1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3I1_GONPE)

HSP 1 Score: 107 bits (268), Expect = 3.640e-26
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:  238 WYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            WY  L+KP W PPN++FP++W+PLK++Q  A + +W K       A P+ + AV+  LG+ WN VFF +R+LK     +  ++ S+      F+ VS  A YL  PT  WVS+AT L 
Sbjct:   42 WYKALKKPKWTPPNYVFPLVWIPLKLMQSVALWLVWTKAPSARALAFPLTAMAVHMGLGNWWNVVFFGQRKLKESLPWMYTFWASIAVTAAAFYPVSPAAAYLMVPTQIWVSIATKLN 159
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A7S3PBU0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.350e-26
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:  238 WYNNLQKPWWNPPNWLFPIMWVPL-KILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            WY+NL+KPWWNPP WLFPIMW+ + K  Q +    +  K++   +  +P+ ++  + +LGD WNKVFF  +    G A+IS++Y +L A ++LFF V   AG L  P+  W+SVAT+L 
Sbjct:  158 WYSNLKKPWWNPPGWLFPIMWLLIVKPTQAWGIARVL-KVSDEKFPWLPLGAFTGHLALGDAWNKVFFGMQCTGRGAALISVFYGALLASMRLFFKVDSLAGKLLLPSFGWISVATSLN 275
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: B8BVL6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVL6_THAPS)

HSP 1 Score: 110 bits (276), Expect = 5.400e-26
Identity = 62/171 (36.26%), Postives = 89/171 (52.05%), Query Frame = 1 
Query:  109 YIEVARLAMWTAVVF--------LSGAATAGPKRYLETSQLFNIENPISEDWYNNLQKPWWNPPNWLFPIMWVPLKILQVFACYELWDKLAGRNYK--AIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            Y    R+A+  +V+F        +    ++  K+ L  +++     P   DWY+NL KP WNPP WLFPIMW+ +     F    +W  +A  + K  A+P + Y  + SLGD WNKVFF  + +  G AVI  ++  LW+   LF +V   AG    PT  WV+VA AL 
Sbjct:  128 YSTAIRIAVCFSVIFGSAYFGSLIDNGLSSATKQVLAPNEI-----PGDSDWYSNLAKPRWNPPGWLFPIMWLIISKPTQFVA--VWKLMATSSEKRLALPFLVYCAHLSLGDAWNKVFFGLQCIGRGMAVIFTFWSVLWSSAYLFREVDSSAGLFLLPTCLWVTVAAALN 291
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A6U3SUG0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SUG0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.420e-26
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 1 
Query:   64 VGIMARLTKEFVAPKYIEVARLAMWTAVVFLSGAATAGPKRYLETSQLFNIENPISEDWYNNLQKPWWNPPNWLFPIMWV----PLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            +  ++ LTK  +    + +   A  T    +    +A  K+ L+ +   +  NP   DWY+ L+KP WNPP W+FPIMW+    P + + V        K  G +Y  +P+++Y  + +LGD WNKVFF  +    G AVI  ++  LW  + LF+ V E AG    PT  WV+VA AL 
Sbjct:  122 INFVSSLTKRIIQTTTLLLIIFASSTFGSIVDMGLSAASKQVLDPN---STPNP---DWYSGLKKPKWNPPGWIFPIMWLIVSKPTQFIAVSKLIATQSK-NGVDYPNLPLLAYCTHLALGDAWNKVFFGLQCTGRGLAVILTFWSVLWTCVYLFYQVDETAGLFLVPTGLWVTVAAALN 294
[Close]
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Match: A0A1E7ETG3_9STRA (TspO/MBR-related protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETG3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.780e-25
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 1 
Query:  154 LSGAATAGPKRYLETSQLFNIENPISEDWYNNLQKPWWNPPNWLFPIMWV----PLKILQVFACYELWDKLAGRNYKA-----IPVISYAVYKSLGDVWNKVFFERRRLKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQ 591
            + G+ +A  K+ L  S++    N     WY NL+KP WNPP W+FPIMW+    P ++  V    +  +   G    +     + +  Y  + +LGD WNKVFF    +  GT VIS++   L A   LF+ +   AGY   PT  WVSVATALQ
Sbjct:   13 VDGSLSAATKQALNPSKVLGDPN-----WYANLKKPTWNPPGWIFPIMWLLISKPTQLCAVSRILKYGNGTGGAVTSSTTSHLLALFVYTTHLALGDAWNKVFFGLECIGRGTVVISIFLSFLLASTYLFYTIDPAAGYYMLPTCGWVSVATALQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1136.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDV9_ECTSI4.200e-9971.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R1FSF7_EMIHU1.760e-2843.90Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S0IPT2_9EUKA1.790e-2741.27Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
B7GCI8_PHATC2.500e-2735.35Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3UZZ5_HETAK2.500e-2644.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A150H3I1_GONPE3.640e-2640.68Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S3PBU0_9STRA5.350e-2643.70Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8BVL6_THAPS5.400e-2636.26Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U3SUG0_9STRA7.420e-2634.44Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7ETG3_9STRA1.780e-2537.42TspO/MBR-related protein n=1 Tax=Fragilariopsis cy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1136contigH-paniculata_contig1136:23660..28702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.1
Seed ortholog evalue3e-78
Seed eggNOG ortholog2880.D8LDV9
KEGG koko:K05770
KEGG TC9.A.24
KEGG Pathwayko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.benzodiazepine receptor activity
EggNOG OGsCOG3476@1,KOG3797@2759
Ec32 ortholog descriptionTspO/MBR-related protein
Ec32 orthologEc-08_003550.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons5
Model size597
Cds size597
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1136.875.1prot_H-paniculata_contig1136.875.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1136 23660..28702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.828424-CDS-H-paniculata_contig1136:23659..238981622928843.828424-CDS-H-paniculata_contig1136:23659..23898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 23660..23898 +
1691480641.8049593-CDS-H-paniculata_contig1136:23659..238981691480641.8049593-CDS-H-paniculata_contig1136:23659..23898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 23660..23898 +
1622928843.846348-CDS-H-paniculata_contig1136:26817..268991622928843.846348-CDS-H-paniculata_contig1136:26817..26899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 26818..26899 +
1691480641.815698-CDS-H-paniculata_contig1136:26817..268991691480641.815698-CDS-H-paniculata_contig1136:26817..26899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 26818..26899 +
1622928843.869072-CDS-H-paniculata_contig1136:27568..276761622928843.869072-CDS-H-paniculata_contig1136:27568..27676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 27569..27676 +
1691480641.8232818-CDS-H-paniculata_contig1136:27568..276761691480641.8232818-CDS-H-paniculata_contig1136:27568..27676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 27569..27676 +
1622928843.8861547-CDS-H-paniculata_contig1136:27894..279671622928843.8861547-CDS-H-paniculata_contig1136:27894..27967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 27895..27967 +
1691480641.8302128-CDS-H-paniculata_contig1136:27894..279671691480641.8302128-CDS-H-paniculata_contig1136:27894..27967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 27895..27967 +
1622928843.906684-CDS-H-paniculata_contig1136:28607..287021622928843.906684-CDS-H-paniculata_contig1136:28607..28702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 28608..28702 +
1691480641.837675-CDS-H-paniculata_contig1136:28607..287021691480641.837675-CDS-H-paniculata_contig1136:28607..28702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1136 28608..28702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1136.875.1

>prot_H-paniculata_contig1136.875.1 ID=prot_H-paniculata_contig1136.875.1|Name=mRNA_H-paniculata_contig1136.875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
TAIFAEAVAETALESVMIVGFVGIMARLTKEFVAPKYIEVARLAMWTAVV
FLSGAATAGPKRYLETSQLFNIENPISEDWYNNLQKPWWNPPNWLFPIMW
VPLKILQVFACYELWDKLAGRNYKAIPVISYAVYKSLGDVWNKVFFERRR
LKLGTAVISLYYISLWAGIKLFFDVSERAGYLFAPTAAWVSVATALQV*
back to top

mRNA from alignment at H-paniculata_contig1136:23660..28702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1136.875.1 ID=mRNA_H-paniculata_contig1136.875.1|Name=mRNA_H-paniculata_contig1136.875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5043bp|location=Sequence derived from alignment at H-paniculata_contig1136:23660..28702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCCATTTTTGCAGAGGCAGTGGCAGAGACAGCTCTGGAGAGTGTGAT
GATCGTTGGGTTCGTGGGGATAATGGCCCGCTTGACGAAAGAATTCGTGG
CTCCCAAGTACATAGAAGTGGCAAGACTGGCTATGTGGACTGCCGTCGTC
TTTTTGTCCGGGGCGGCCACCGCGGGTCCGAAGCGGTACTTGGAAACTTC
GCAGCTGTTCAATATTGAGAACCCGATATCGGAGGATTGGTGAGGATGAG
ACCGGCACGGTAGTGAGTGGATGGTGTATCAGCGGGCGCCGTTTTTCCTT
GATTTCATTTGTTGCTACAATAGTATAGTGCTTTTTTTTCAAAAGGCAGA
CGCAAAAACTAATGCACAAAAAAATATCTATAGATTACATGTTTCTAATA
CTATCGTATTATGTAAAAGTTACCTGGTACTACCATAACTATTGTGTTTC
GTAATTGTAACTCTTCGGTGAGGAGGAGGAGGATGACAAATGCATTAGAA
CAGGGATATGTGTTCTCTGGCTGAAGGTGTATCCCCTCAGTATATTTTTA
CCTCGACAATTGACTGATTTTTGTCAACACGTTTGTCACCACGGTTGAAT
TTTTTTTCCGTACTGACTAGTGCCAGGGTGTTCCCAATACAGTACGATAC
TAAGAATGCTGGTGAGCACGTTCTGTATTTCGGCACTGAGTATCCCCAGT
ATTTTGACCCCAAGATACTGAGTAGGGTACCGAGTACATGCGTCACCCGT
AAATACTGGTAATACTGTGTATCATCAGTACAGTCAGCCCCAAATATTTA
GTATAACTTCAATATCCTTCAATACCATCAATTTTGTAACCCCACAATAC
TTGGTATCCTACATTACCACGAGTATTATCACCCCTACAGTACCGCCAGT
ATCGTCACCCTGCAATACTCGACTGTTTAGAGTATGGCGAGGACTTTGTT
GTACTGTACTCATGTACACTGGTGGTATAAGATATTGGATACTGGGTTCA
CATGAAGTTGGCCACCGTGAGATGCGTAGACTTCAATATTATTTTGATAT
CCTACATACATACCGCGAGATCTTTCGGTATGACCACTGCAGGTGCAGCA
AGGATGTCCGGTTCACATGATTCGCCCACCTACCCAATGAATGCGGGCTA
CTGCGTACCGTGGCGAGTGCTCAGTACTGAATTCATTGTCCGGTCTGTGG
TATCCGACCAAGGGCATGAGTGATAGCGCAGGATCCGCGGCAGAGTCTAG
CTCGGTCGGGGGGGAGGGCTCTTGCCACCGCCGAAACACCGAGTGTTCCT
CCCGCAGGGGCAAGGCTGAAGGTTGTTGTAGCTGAAAATCACCGCATGTT
CACTTAGCCATAGTGCACAACAACAAAAATACACGTGCAGGTGTCTTCAC
ACTTGTTGTCAGAACACCAAATACCCAGTATCCTGCAGTATGTCAAATAT
ATCGATCTAAGTATTGCTCCAGTACCCTCTAGTATCGAGACCCCCAAATA
CTTGGTACTGTTCAGTATCAACAGTATTGTTAGTCCGAAAGATTTGGTAT
GTACTGAGTACCCCACCAGTAAGTACTGGTGATACTGAGTACCATCAGTA
TCGTCAGCCCGAAATACTCTGTGTTTTTTCAGTACCACCATTATAGCGAA
AACATTTGGTGCTCTTGAGTACCACCAGTATTGTCAGCCCCAAGTAGTGA
GTCAGGTACTGAGTACCTCAGCAGTAAGAATTGGTGAAATTGGGTACCGT
CCGTATCTTCAGCACACAATACTCACTATCGCTTCAGTACCGTCATAATC
ATGGGTCCAAAATACTTGGTATTCTTCAGCACCACCGGTACCGTCAGCCC
CAAATATTCAGTGTTCCAGGATACTGTACTGGGAAAGTCTCTAAACTGCG
TTCTGCCTTACTTTCGGACAAGACATCCGCGGTATTGATGCTTCCACACG
ACTCAGCTCTCTTAATATGAGGTTTTGAAAATTGGCACAGATGGATGAAA
CAGCTGACTGGTTTTTCGCTTTTTATTTTTTTGTTTTGTTCTGCCTCCCC
TCGTACTTGTCCGTTACAAGCGTGTAGCGATAGAGTCTGCTTGTGCTGGC
TGTATCGATTTTTCGTGCTTCGAGCCAACCGATACGCAATGGTTGCGGTG
TGCTATGCGGAAAAAATATGCGCAAAAGACAAATTCTGCCAGCATCGGGA
ACCCCCACAAAACGAAGAGTTGGAAAAATTGGTGTTTCTCTTTGTTGAAG
ATTTCGTAACGGTAGAGCTAACTGCGTGATTTTTATTTAGCTCGGCCGTT
CGGCTATCGGTACTCTACACATATCCCCAAAACTAAACATCAAAATTAGT
GATGAAGCATGCGACAACTGTTTATGAGAAGTGGCCATTCACAATAATTC
AATCGAAAAAATTGTACGAGTAATGTTCGGCAAAATACTTGGATAAAGTA
TTCGAAAAACAACATATTTCAAATAATCGTTAGAATCAATTACCTTCGCC
GTATTTTTGCATTGCTTTTTTGTTTTTTTTCCACTCTTTCGACCACTCTC
CAGCACTGGGTTTGCGAAAAACACACGAGGTGTATCTTATTTGCCGTGGC
GATAGAGCTATAATAACCAAAAACAATGCGGAAAATAAAACGGAAAAACG
CCAAATGGTTGTCGCCCTTGATTTCTTCCCTTTTATTTAATACCATTCAG
AAGAAAAAAAGATAAATCAAAGTAGATCTCTTCATTCAGCATTGTCTCCT
TGCATGATTGGATGTACCTTTCGTCAGCCATGATGATGCATGCTGCCTGG
ACGCGGTTTCAGTTTGAACACACGTTTCATGCATGTTTTTGTGTTGGTTA
GTACGACTCCTCTTAGATGAACATGACTTAATAATCGTGCACTTATTCCT
GTGTGCGGATGTTGTGTTGCTCGAGTAGAGGTGATAAGTAGATCCGTCGT
GGTCAGTGGTGCCCCCCCGCCTCCCTCCCCTCCTCTTTTGAGCCACACTT
GACTACGTAGGAACGAACGATTGGCCATCGAATGTCGCTCTGATACGATC
AAAGCTCCATCTTCCCAAGGACGCGTGGTCCCTGGTGTAACAATTACAGC
ACGCAAGACGTGAGTACGTCTCCCCCGCGCTTCTATCCCTCGACTCCGCT
TTATTCAGGTACAACAATCTACAGAAGCCCTGGTGGAACCCGCCCAACTG
GTTGTTCCCCATCATGTGGGTACCACTCAAGATTCTGCAGGTAGGACACG
CGCGGGGATTGGATTGTGACTAAACGGAGAGTGCAGGTGTTTGCAGACGG
GGAGGCAGCGGCGCAGCTGAGGCGCAGCTGAGGCGCGCGCGCGGGGGGGA
GGGGGAGGGCAAAGAATAGTGATGATTTATCGATACGGGATAAGGGGAGG
AAGTCACTTGTGCGAGTTTTCGCGATCGTTGCTCGTTGAGCTGTCGATGC
TAGTGGGTACATGAAGGGCAATCACTTTTTCTGTTGGGGATTTACGTCGT
GGGAGGCTATGTCGTCTTCATTTTTTTTTGCGGGCGAAGGGTTGCCGTTT
GATGCCGTGGGCCCGCCTGTGTGGAGGGAGGTTGGCTGAATGGGCCTTGG
CTAGTTTCACGTACAATTCCTTTTTTCGTGTGTCAATGGAGGCTATGCCC
TACACAGCAGTGCACGTGTCTTGTGCGTGTTTTCTTGTTTCAAGCGAGAA
TGGCGTTCGCCTGTCCTTACCTGCTCTCTTGAGCGCACTAACGATGGATT
CTGTTTCAATCGCTTCTTATGGGCGTCATGTTTTATGTGCGCGCCATGAA
GTGCTTGTTTCTCTCTGTTGAATGATGTGACTGTACTGCATCGTGTTCAT
ACATATGTGGTTTTGTGCTGGTTTTGCTCGATTTTGTGCGCGCTGCTTGC
TCTCGGCAGGTGTTCGCTTGCTATGAGTTGTGGGATAAGCTGGCGGGGCG
AAACTATAAGGCAATTCCCGTTATCTCTTACGCCGTTTACAAGTCCTTGG
GTGACGTGTGGAACAAGGTGTGTTGTTGCTTTCAACCCTCTAGGCGCTGA
ATTCCACCTAGAACCCCCCCTGGTACAGTAAGCTCAGCATGAATACAGAA
GATAATGTAAATCATGATCAATATCAAAGCGGGATGATCGGTAAGTGAGA
GGTTTTCACGCTCCCCCCTCCCCCTCCAACAACTCGCCCACCTACGTATT
TTCATATTTCCCCCCCCATATTTTCCGCTCCCCAGGTTTTCTTCGAGAGA
CGCCGACTGAAGCTTGGCACGGCGGTGATATCTCTCTACTACATCTCTCT
CTGGGCTGGTGAGCGTTATCCCCGGCCACCCACCCACCCACCCACTCCGC
GTCAAATCCTAAGTGATATGTCCCCGTGACTCCACGTCCAACTTGCATAA
TAATGCCTGACTCTGTAGATACCCTGTAACAAACACTCCCCCCCGCGCGC
GCCCCACTTCCTTGCCTCGCTAGCCGGTCGATGTAGTCTATCACTCCGCC
TTACTCACCTGGCGCTTGGAATATGTTGACGGGCACTGTGTAGTTCGTCT
TATGATGTACCCGTTTCTTTTCTTCTTTTTGTGGTCTATTATTTGCCTGT
AACTCTTGACTCTTGTGCTGTCGACAGATAAGACCGTTCGGGAGAATGGT
ACTGTAGATAGACCTGAACGTTCGATATGAGAAAATTTCAACATTTCTCC
TCTTGTACGTTTCCCCGCAAAAATCAAAACGTGCGCTCTCTCGCGGTCTC
ATCCTGCCTTTATAATATTTGTGTGTTTGGTAAGACAGCGCTTTTGTCGG
TCCTCTGCTATTTATGCACCGTTTTCCGTCACTTTGTTTCCCTGGTTCCC
CATGTTTAAAGTGTGAAGGGTGTGCGTGATTCGCCCACTGTAATTTTTTT
TGCCGTACTCAATATCCTTGCCGTATGCACGTAAACTCACTACTGCAGGC
ATCAAGTTGTTCTTTGACGTGAGCGAGAGGGCGGGGTATCTATTCGCCCC
AACCGCCGCGTGGGTATCCGTCGCTACGGCCCTGCAGGTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1136:23660..28702+

>mRNA_H-paniculata_contig1136.875.1 ID=mRNA_H-paniculata_contig1136.875.1|Name=mRNA_H-paniculata_contig1136.875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig1136:23660..28702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCCATTTTTGCAGAGGCAGTGGCAGAGACAGCTCTGGAGAGTGTGAT
GATCGTTGGGTTCGTGGGGATAATGGCCCGCTTGACGAAAGAATTCGTGG
CTCCCAAGTACATAGAAGTGGCAAGACTGGCTATGTGGACTGCCGTCGTC
TTTTTGTCCGGGGCGGCCACCGCGGGTCCGAAGCGGTACTTGGAAACTTC
GCAGCTGTTCAATATTGAGAACCCGATATCGGAGGATTGACAGCCATTTT
TGCAGAGGCAGTGGCAGAGACAGCTCTGGAGAGTGTGATGATCGTTGGGT
TCGTGGGGATAATGGCCCGCTTGACGAAAGAATTCGTGGCTCCCAAGTAC
ATAGAAGTGGCAAGACTGGCTATGTGGACTGCCGTCGTCTTTTTGTCCGG
GGCGGCCACCGCGGGTCCGAAGCGGTACTTGGAAACTTCGCAGCTGTTCA
ATATTGAGAACCCGATATCGGAGGATTGGTACAACAATCTACAGAAGCCC
TGGTGGAACCCGCCCAACTGGTTGTTCCCCATCATGTGGGTACCACTCAA
GATTCTGCAGGTACAACAATCTACAGAAGCCCTGGTGGAACCCGCCCAAC
TGGTTGTTCCCCATCATGTGGGTACCACTCAAGATTCTGCAGGTGTTCGC
TTGCTATGAGTTGTGGGATAAGCTGGCGGGGCGAAACTATAAGGCAATTC
CCGTTATCTCTTACGCCGTTTACAAGTCCTTGGGTGACGTGTGGAACAAG
GTGTTCGCTTGCTATGAGTTGTGGGATAAGCTGGCGGGGCGAAACTATAA
GGCAATTCCCGTTATCTCTTACGCCGTTTACAAGTCCTTGGGTGACGTGT
GGAACAAGGTTTTCTTCGAGAGACGCCGACTGAAGCTTGGCACGGCGGTG
ATATCTCTCTACTACATCTCTCTCTGGGCTGGTTTTCTTCGAGAGACGCC
GACTGAAGCTTGGCACGGCGGTGATATCTCTCTACTACATCTCTCTCTGG
GCTGGCATCAAGTTGTTCTTTGACGTGAGCGAGAGGGCGGGGTATCTATT
CGCCCCAACCGCCGCGTGGGTATCCGTCGCTACGGCCCTGCAGGTGTGAG
CATCAAGTTGTTCTTTGACGTGAGCGAGAGGGCGGGGTATCTATTCGCCC
CAACCGCCGCGTGGGTATCCGTCGCTACGGCCCTGCAGGTGTGA
back to top