mRNA_H-paniculata_contig32531.8750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32531.8750.1
Unique NamemRNA_H-paniculata_contig32531.8750.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32531.8750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32531contigH-paniculata_contig32531:933..2030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size987
Cds size957
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32531.8750.1prot_H-paniculata_contig32531.8750.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32531 933..2000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.0523438-CDS-H-paniculata_contig32531:932..10281622930005.0523438-CDS-H-paniculata_contig32531:932..1028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32531 933..1028 -
1691481107.0194228-CDS-H-paniculata_contig32531:932..10281691481107.0194228-CDS-H-paniculata_contig32531:932..1028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32531 933..1028 -
1622930005.0681512-CDS-H-paniculata_contig32531:1139..20001622930005.0681512-CDS-H-paniculata_contig32531:1139..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32531 1140..2000 -
1691481107.0394495-CDS-H-paniculata_contig32531:1139..20001691481107.0394495-CDS-H-paniculata_contig32531:1139..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32531 1140..2000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.083077-UTR-H-paniculata_contig32531:2000..20301622930005.083077-UTR-H-paniculata_contig32531:2000..2030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32531 2001..2030 -
1691481107.0497768-UTR-H-paniculata_contig32531:2000..20301691481107.0497768-UTR-H-paniculata_contig32531:2000..2030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32531 2001..2030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32531.8750.1

>prot_H-paniculata_contig32531.8750.1 ID=prot_H-paniculata_contig32531.8750.1|Name=mRNA_H-paniculata_contig32531.8750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
MWRQTAMAYFALCGLEDALSTNVHIHVFPMMPDETLRELRITLAQVNAAK
HAFLIFLGAMHDRVSRQIVPKSGSPSVAWTELEIHYSPSTIGARIALHGK
FSSIKHKAGTDPEETFIEMESLAAEMEAKGCGVSEAMLTVKLMSLMPPEF
DTVLDPIRYGGTPSRGHIRTAVRGKYLSLKESGKSGGGRALFTSTAAGMD
VDEVVVTVAVEKAPVAAEQTSSSSNPTAASTTAGTDGNAKSGETRTCYIC
EQVGHLVRTCPKRRCAKCGCIGHHTKDCTRTTTAVLAQEGEEVWIADSGA
TVHTTPSRDNMFNYCKTDG
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mRNA from alignment at H-paniculata_contig32531:933..2030-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32531.8750.1 ID=mRNA_H-paniculata_contig32531.8750.1|Name=mRNA_H-paniculata_contig32531.8750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig32531:933..2030- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTCTCAGGAAAACCAGAGGATTGGGTTATGTGGAGACAGACTGCGAT
GGCATATTTCGCCTTGTGCGGCTTGGAGGATGCGTTGAGCACTAACGTTC
ATATACATGTTTTCCCGATGATGCCTGATGAAACGCTTCGTGAGTTGAGG
ATTACTTTGGCACAGGTCAATGCGGCCAAACATGCCTTTCTGATTTTCCT
CGGTGCCATGCACGATCGAGTCAGCAGGCAAATAGTCCCGAAATCGGGTT
CACCGTCTGTTGCGTGGACGGAGCTCGAGATACATTATTCTCCAAGTACA
ATCGGTGCAAGGATAGCTTTACATGGTAAGTTTTCCAGCATTAAACACAA
GGCTGGTACTGATCCTGAGGAGACATTCATTGAGATGGAGTCGCTGGCTG
CTGAGATGGAAGCAAAGGGGTGCGGAGTTTCTGAAGCAATGCTAACGGTT
AAACTGATGTCACTCATGCCCCCCGAATTTGACACTGTACTCGACCCAAT
CCGATATGGAGGAACCCCGTCTCGAGGTCACATCAGGACAGCAGTTCGCG
GCAAGTACTTATCCTTGAAAGAGAGTGGAAAGAGCGGCGGCGGGCGTGCG
CTGTTTACAAGCACGGCCGCGGGCATGGACGTGGACGAGGTGGTAGTAAC
GGTGGCCGTGGAAAAAGCTCCGGTCGCGGCGGAGCAAACGTCTTCCAGCT
CTAATCCAACGGCTGCATCAACCACAGCAGGTACAGATGGGAATGCGAAA
TCTGGTGAAACGCGAACCTGTTATATCTGTGAGCAGGTTGGCCATCTCGT
GAGGACTTGTCCTAAAAGAAGGTGTGCGAAGTGCGGATGCATAGGTCACC
ACACGAAGGACTGCACAAGAACAACGACGGCAGTGCTAGCTGTGGCTGAC
GCAAGCAAGAACACCATCCACGGAGCCTTCATGACTGCAGAATCAAATGG
CGAGTATACGATGGTTGGGGTGCAGGAAGGGCTAGACGAAGTACAAGCAG
AGCAAGAAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCAT
ACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32531:933..2030-

>mRNA_H-paniculata_contig32531.8750.1 ID=mRNA_H-paniculata_contig32531.8750.1|Name=mRNA_H-paniculata_contig32531.8750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig32531:933..2030- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAGACAGACTGCGATGGCATATTTCGCCTTGTGCGGCTTGGAGGA
TGCGTTGAGCACTAACGTTCATATACATGTTTTCCCGATGATGCCTGATG
AAACGCTTCGTGAGTTGAGGATTACTTTGGCACAGGTCAATGCGGCCAAA
CATGCCTTTCTGATTTTCCTCGGTGCCATGCACGATCGAGTCAGCAGGCA
AATAGTCCCGAAATCGGGTTCACCGTCTGTTGCGTGGACGGAGCTCGAGA
TACATTATTCTCCAAGTACAATCGGTGCAAGGATAGCTTTACATGGTAAG
TTTTCCAGCATTAAACACAAGGCTGGTACTGATCCTGAGGAGACATTCAT
TGAGATGGAGTCGCTGGCTGCTGAGATGGAAGCAAAGGGGTGCGGAGTTT
CTGAAGCAATGCTAACGGTTAAACTGATGTCACTCATGCCCCCCGAATTT
GACACTGTACTCGACCCAATCCGATATGGAGGAACCCCGTCTCGAGGTCA
CATCAGGACAGCAGTTCGCGGCAAGTACTTATCCTTGAAAGAGAGTGGAA
AGAGCGGCGGCGGGCGTGCGCTGTTTACAAGCACGGCCGCGGGCATGGAC
GTGGACGAGGTGGTAGTAACGGTGGCCGTGGAAAAAGCTCCGGTCGCGGC
GGAGCAAACGTCTTCCAGCTCTAATCCAACGGCTGCATCAACCACAGCAG
GTACAGATGGGAATGCGAAATCTGGTGAAACGCGAACCTGTTATATCTGT
GAGCAGGTTGGCCATCTCGTGAGGACTTGTCCTAAAAGAAGGTGTGCGAA
GTGCGGATGCATAGGTCACCACACGAAGGACTGCACAAGAACAACGACGG
CAGTGCTAGCTATGTGGAGACAGACTGCGATGGCATATTTCGCCTTGTGC
GGCTTGGAGGATGCGTTGAGCACTAACGTTCATATACATGTTTTCCCGAT
GATGCCTGATGAAACGCTTCGTGAGTTGAGGATTACTTTGGCACAGGTCA
ATGCGGCCAAACATGCCTTTCTGATTTTCCTCGGTGCCATGCACGATCGA
GTCAGCAGGCAAATAGTCCCGAAATCGGGTTCACCGTCTGTTGCGTGGAC
GGAGCTCGAGATACATTATTCTCCAAGTACAATCGGTGCAAGGATAGCTT
TACATGGTAAGTTTTCCAGCATTAAACACAAGGCTGGTACTGATCCTGAG
GAGACATTCATTGAGATGGAGTCGCTGGCTGCTGAGATGGAAGCAAAGGG
GTGCGGAGTTTCTGAAGCAATGCTAACGGTTAAACTGATGTCACTCATGC
CCCCCGAATTTGACACTGTACTCGACCCAATCCGATATGGAGGAACCCCG
TCTCGAGGTCACATCAGGACAGCAGTTCGCGGCAAGTACTTATCCTTGAA
AGAGAGTGGAAAGAGCGGCGGCGGGCGTGCGCTGTTTACAAGCACGGCCG
CGGGCATGGACGTGGACGAGGTGGTAGTAACGGTGGCCGTGGAAAAAGCT
CCGGTCGCGGCGGAGCAAACGTCTTCCAGCTCTAATCCAACGGCTGCATC
AACCACAGCAGGTACAGATGGGAATGCGAAATCTGGTGAAACGCGAACCT
GTTATATCTGTGAGCAGGTTGGCCATCTCGTGAGGACTTGTCCTAAAAGA
AGGTGTGCGAAGTGCGGATGCATAGGTCACCACACGAAGGACTGCACAAG
AACAACGACGGCAGTGCTAGCTCAAGAAGGGGAAGAGGTCTGGATAGCGG
ATTCGGGAGCAACAGTTCATACAACCCCTTCACGGGATAATATGTTCAAC
TATTGTAAAACTGACGGACAAGAAGGGGAAGAGGTCTGGATAGCGGATTC
GGGAGCAACAGTTCATACAACCCCTTCACGGGATAATATGTTCAACTATT
GTAAAACTGACGGA
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