mRNA_H-paniculata_contig3253.8749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI) HSP 1 Score: 243 bits (619), Expect = 2.470e-60 Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 1
Query: 5110 GRKREMVVVVREVVVSGFDDLKGLYVLERTDGGKENMKLEELEAALRQSQLLYGCAERMTPLKSQELDMALQGKLDHSALTRASPTESSRAADGGGDSGXXXXXTGGAMSRLDATTLDLAALLRGKSYSTFTPAERTRLLRGLIDLAVSTGPVKEHMQLLQDRVNRLEQEAMASERQAASMSERQKFDDRVVVKPVKLPPTPXXXXXXXXXRLSLDFSCKHPERKHYARGLCVSCYQRWLRNRGNGDDDVKS----PPLTDRKRSRS 5898
G K VVRE VVS FD+++G YVL T +E + LEELE AL+QSQ+LYGCAERM PL EL+ G+L+ S + +++ A G G SG +G LD+ +L LA+LLR KSY+ FTPAER RLLRGL DLAVST P+KEH+QLLQ+RV RLE EA+ASE+QA+SMSERQ+F+ + +K P R S DFSC HPERKHYARGLCVSCYQRWLR R +DD + PPLT +KR R+
Sbjct: 1840 GTKGGEATVVREAVVSAFDEIEGKYVLVNTHEEEEKLTLEELEVALQQSQVLYGCAERMLPLSPSELEKVRDGELNASTAVKPPAEDTALAGTGAGGSGGGYGTSG---DTLDSKSLGLASLLRRKSYAVFTPAERARLLRGLCDLAVSTSPIKEHLQLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPS-IKSP------------RRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDTAAVAGAPPLTGKKRPRT 2090
BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE) HSP 1 Score: 236 bits (602), Expect = 2.100e-58 Identity = 139/260 (53.46%), Postives = 171/260 (65.77%), Query Frame = 1
Query: 5110 GRKREMVVVVREVVVSGFDDLKGLYVLERTDGGKENMKLEELEAALRQSQLLYGCAERMTPLKSQELDMALQGKLDHSALTRASPTESSRAADGGGDSGXXXXXTGGAMSRLDATTLDLAALLRGKSYSTFTPAERTRLLRGLIDLAVSTGPVKEHMQLLQDRVNRLEQEAMASERQAASMSERQKFDDRVVVKPVKLPPTPXXXXXXXXXRLSLDFSCKHPERKHYARGLCVSCYQRWLRNRGNGDDDVKS----PPLT 5877
G K VVRE VVS FD+++G YVL T +E + LEELE AL+QSQ+LYGCAERM PL E++ G+L+ SA + +++ A G G SG G + LD+ +L LA+LLR KSY+ FTPAER RLLRGL DLA ST P+KEH+QLLQ+RV RLE EA+ASE+QA+SMSERQ+F+ + +K P R S DFSC HPERKHYARGLCVSCYQRWLR R +DD + PPLT
Sbjct: 1211 GTKDGEATVVREAVVSVFDEIEGKYVLVNTHDEEEKLTLEELEVALQQSQVLYGCAERMLPLSPSEIEKVRHGELNASAAVKPPTEDTALAGTGAGGSGGGY---GTSSDTLDSKSLGLASLLRRKSYAVFTPAERARLLRGLCDLAASTSPIKEHLQLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPS-IKSP------------RRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDAAAVAGAPPLT 1454 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3253.8749.1 >prot_H-paniculata_contig3253.8749.1 ID=prot_H-paniculata_contig3253.8749.1|Name=mRNA_H-paniculata_contig3253.8749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2267bp GVGAIAAAGSAVGDGADFLPEPRNSGSSGDPDLNDMVTNATANSGSDAVTback to top mRNA from alignment at H-paniculata_contig3253:5340..17025- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3253.8749.1 ID=mRNA_H-paniculata_contig3253.8749.1|Name=mRNA_H-paniculata_contig3253.8749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11686bp|location=Sequence derived from alignment at H-paniculata_contig3253:5340..17025- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3253:5340..17025- >mRNA_H-paniculata_contig3253.8749.1 ID=mRNA_H-paniculata_contig3253.8749.1|Name=mRNA_H-paniculata_contig3253.8749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=13602bp|location=Sequence derived from alignment at H-paniculata_contig3253:5340..17025- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |