prot_H-paniculata_contig3253.8749.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3253.8749.1
Unique Nameprot_H-paniculata_contig3253.8749.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length2267
Homology
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BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.470e-60
Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 0 
Query: 1704 GRKREMVVVVREVVVSGFDDLKGLYVLERTDGGKENMKLEELEAALRQSQLLYGCAERMTPLKSQELDMALQGKLDHSALTRASPTESSRAADGGGDSGXXXXXTGGAMSRLDATTLDLAALLRGKSYSTFTPAERTRLLRGLIDLAVSTGPVKEHMQLLQDRVNRLEQEAMASERQAASMSERQKFDDRVVVKPVKLPPTPXXXXXXXXXRLSLDFSCKHPERKHYARGLCVSCYQRWLRNRGNGDDDVKS----PPLTDRKRSRS 1966
            G K     VVRE VVS FD+++G YVL  T   +E + LEELE AL+QSQ+LYGCAERM PL   EL+    G+L+ S   +    +++ A  G G SG     +G     LD+ +L LA+LLR KSY+ FTPAER RLLRGL DLAVST P+KEH+QLLQ+RV RLE EA+ASE+QA+SMSERQ+F+  +    +K P            R S DFSC HPERKHYARGLCVSCYQRWLR R   +DD  +    PPLT +KR R+
Sbjct: 1840 GTKGGEATVVREAVVSAFDEIEGKYVLVNTHEEEEKLTLEELEVALQQSQVLYGCAERMLPLSPSELEKVRDGELNASTAVKPPAEDTALAGTGAGGSGGGYGTSG---DTLDSKSLGLASLLRRKSYAVFTPAERARLLRGLCDLAVSTSPIKEHLQLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPS-IKSP------------RRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDTAAVAGAPPLTGKKRPRT 2090
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BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.100e-58
Identity = 139/260 (53.46%), Postives = 171/260 (65.77%), Query Frame = 0 
Query: 1704 GRKREMVVVVREVVVSGFDDLKGLYVLERTDGGKENMKLEELEAALRQSQLLYGCAERMTPLKSQELDMALQGKLDHSALTRASPTESSRAADGGGDSGXXXXXTGGAMSRLDATTLDLAALLRGKSYSTFTPAERTRLLRGLIDLAVSTGPVKEHMQLLQDRVNRLEQEAMASERQAASMSERQKFDDRVVVKPVKLPPTPXXXXXXXXXRLSLDFSCKHPERKHYARGLCVSCYQRWLRNRGNGDDDVKS----PPLT 1959
            G K     VVRE VVS FD+++G YVL  T   +E + LEELE AL+QSQ+LYGCAERM PL   E++    G+L+ SA  +    +++ A  G G SG      G +   LD+ +L LA+LLR KSY+ FTPAER RLLRGL DLA ST P+KEH+QLLQ+RV RLE EA+ASE+QA+SMSERQ+F+  +    +K P            R S DFSC HPERKHYARGLCVSCYQRWLR R   +DD  +    PPLT
Sbjct: 1211 GTKDGEATVVREAVVSVFDEIEGKYVLVNTHDEEEKLTLEELEVALQQSQVLYGCAERMLPLSPSEIEKVRHGELNASAAVKPPTEDTALAGTGAGGSGGGY---GTSSDTLDSKSLGLASLLRRKSYAVFTPAERARLLRGLCDLAASTSPIKEHLQLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPS-IKSP------------RRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDAAAVAGAPPLT 1454
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3253.8749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI2.470e-6053.56Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE2.100e-5853.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1742..1762
NoneNo IPR availableCOILSCoilCoilcoord: 1860..1887
NoneNo IPR availableCOILSCoilCoilcoord: 591..627
NoneNo IPR availableCOILSCoilCoilcoord: 1978..1998
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 141..196
e-value: 2.9E-7
score: 32.1
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 147..187
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 210..314
e-value: 5.3E-5
score: 25.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 277..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3253contigH-paniculata_contig3253:5341..17025 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3253.8749.1mRNA_H-paniculata_contig3253.8749.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3253 5340..17025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3253.8749.1 ID=prot_H-paniculata_contig3253.8749.1|Name=mRNA_H-paniculata_contig3253.8749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2267bp
GVGAIAAAGSAVGDGADFLPEPRNSGSSGDPDLNDMVTNATANSGSDAVT
DVLGNSTSNKTKRARMPKKPEVFNPGPDPPAARSAADAAPTSSGSVQKSK
GKSAAAAGIGAGVVAVAAAAEEVVGAEAGRPGEVLYEVATAPFDHVAFLR
DMKLIWKNAQKFNSDGSALWVAAEHLKQQLDRLFKERFLNVIQEKTPALP
RDTLASFLKALPPWEVLCTTCGAPAHPEASSRRRKSGAAAAAAAAAADSQ
SSASPKRKKKASGKRAPPTEEEAWPALRCAVCRRPRHVECLSAQEARKSK
GLWTCPTCKHQPFSPLGCPIIPGGGGGAAAAAGASTTDKPQLAPPPPPSQ
TVVSPKKKGARPPKQQQTPAGKGGLLLTATTSPLGKGGSSGSSKGKQRQG
SSGGSGGSGGGGGASFQGWTSSAPGIASSGGGGGGGKGKGRERSGSGGSG
VGVGSASPRSKPASAAAGSSPPWVKGALLPVETATPEALAGGKRRSPSGQ
RREDGVMSDDDGGGSNYGHEDGGRGWVSGGDERRRYKEESSLLPRVTSSN
GPVDSSLANAVADHPPESRQVPPAVVPKLEVPVAAMSPAAVAAAAAAKEE
AEAKAEAAAALEKKKKLKASREERERRRQERLDAIFAVEAKKAAEKTAAR
AALLAAAEAEEEEEEEGEGEGEEGESTEGDRGKGKGRSDGDDRVESKDKR
EAEDDETVDAKDRQQAEPDREMIGATSEAHGETPPPDASKGEAQGLVAGK
ISDETKDKSDNPSPAAAAAAAAVVPAAEELSSAEGWNKQDISSANSATDN
NAEASRKANTGGDKDRRPASAPASIDQQCEGEDQVEDNHAPSRGVEDPLV
GVQGPKAERVGQNNLSGDDYAQSEEFDAQEMEPESHVVSIKDDHTPSQAA
EELPEVKKAKPELKSSEIQTAERNSVTSVAELGSERGDATTAVELTMGGL
SEGPLKAPMVQGPPSTSDVTVSAAAAPPMEPTSVVATPESYPQGPLPTTT
TPPPAAETAMVMTVAPVSPALDTVSFVEPSFVANDTAAAETSLSEKPAAF
AAAATTPRCTTLPLSLLLNAPVDGPSWMPPPSSPSPWSAGPLSSQHWTPP
PPPPAASPGVLSNGSSSNGPSSSSLLSSSMVIATAADAMTPPLLSYNTAD
LLPSHLEKYDEGTPMDLDGGVNVQEYAVETTSSGKPNFFSVDAEPVSAPN
SALVSSTPGLMSLPPSAAADLDDVVIAGMELANAAATDSSANAVADALDT
KKREQQQQGAVDWQGPPERSLVVATASNPADLAPKREAGGVGASAAAATG
QATQHQASTVRASKRTLIAPKKFRDEIMTMTTTMTKTTTMTKMSGSNSGD
GGDRKKDLAGASAAAAAGATTAGLQYTSPPKKATATAKAVSGSKKSVLPN
AAGAAKAAGGTSNKAAGVAKATGAKTAGTAKTVGVAKTAGVAKTAGVAKT
AGVAKTAGMAKTAGMAKTAGVAKIAGASNKTVGAGKAAASLKTAASPKKS
ASLKPTGSSPKMFPKAVGSPKKQSALKSPVRKPSANKLAKSAKHVSSTAA
AAAGRIAGAVSARPVAAPAVPAIPRIPIPRPELLGAIVARLTYRTKPRDE
EDEGEDDVDSDHSAADAGSGDGINAMAEESEEDVEAEDGLDDNEDMEKGS
GSTTVGRGEEDGSISGSGRRRGRSSTSTIAASTEGSDRGGGEKGGKSGEI
KSGGRKREMVVVVREVVVSGFDDLKGLYVLERTDGGKENMKLEELEAALR
QSQLLYGCAERMTPLKSQELDMALQGKLDHSALTRASPTESSRAADGGGD
SGEGGGGTGGAMSRLDATTLDLAALLRGKSYSTFTPAERTRLLRGLIDLA
VSTGPVKEHMQLLQDRVNRLEQEAMASERQAASMSERQKFDDRVVVKPVK
LPPTPKPPRSPRSPRLSLDFSCKHPERKHYARGLCVSCYQRWLRNRGNGD
DDVKSPPLTDRKRSRSVDTNEDESGRPQEDAQEDGDEEEEEADEEVNTDA
GAASRRKEARRGSGSSSACADSGVGHSPPPPPPPPPSRSKGRKRPRASMT
PEQPASQEGEVDGEMASTAAPSRSRGRNANGRGGSGGDRDGRQGGDEAET
ARVSGAGWRGKGGRSGRRGGTRSGGKTNRGSGGGSGSANEAPVGAASLAS
MEVEDVAPSDIAPPAEEEMLEEVAPAEPEQEDHTTRRSKRARKEKGKSLF
TGTSGSSRRAGGGGGGGGGSGRGGASSASGHEDDTSGPDGADGDVVDIPD
AADDDAMVAQDSVEEEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD