prot_H-paniculata_contig3252.8747.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3252.8747.1
Unique Nameprot_H-paniculata_contig3252.8747.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length592
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3252.8747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 471..503
e-value: 270.0
score: 8.3
coord: 324..356
e-value: 0.0032
score: 26.7
coord: 361..392
e-value: 0.23
score: 20.6
coord: 397..428
e-value: 460.0
score: 6.5
coord: 434..466
e-value: 21.0
score: 14.1
coord: 545..576
e-value: 1.3
score: 18.1
coord: 509..540
e-value: 12.0
score: 14.8
coord: 288..319
e-value: 1400.0
score: 2.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 462..561
e-value: 2.2E-6
score: 26.8
coord: 288..460
e-value: 3.8E-15
score: 55.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 270..339
e-value: 4.7E-6
score: 28.0
coord: 340..504
e-value: 2.3E-26
score: 94.5
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 354..560
coord: 275..484

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3252contigH-paniculata_contig3252:4803..9883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3252.8747.1mRNA_H-paniculata_contig3252.8747.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3252 4622..10860 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3252.8747.1 ID=prot_H-paniculata_contig3252.8747.1|Name=mRNA_H-paniculata_contig3252.8747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=592bp
MLLANVRAGARLHMDTVRITLSPSSNVFSRANRARLATAIFCSPSSASRL
CATTSANSSPPLTADSGCSSDIGSSSNSATGEGEKLASMFREPVNRNNIT
KGTLGDAIAEMVRSREQGEAAHRNGGGGGGTGPAKKKIDTTHAPKMRRGD
KDHDNVRQRRSGPSRAETNASRGERWSKSSPLSLSSSPSQTQAEGNRREE
GGAEISAPTPRFQRFGRPGGGGGVAASEIFRDRDQVHRSRRDGDASGKRD
GGRASGKNFDDVHADWGGRSDVHEWLKENVVVNSGTAASMLEREPRISQQ
SSEIMTDILAWFRQTLNLSEETTRSMIVRKPSLLCRSLKDNLEPKVDWLK
ELCDVDDKEAGSIIRRSPNIVTSDVKNMQSKVTWLAQRLGVSHAEISRVV
AGCPAILTNGISTGLEPRLKWMQAELFRDETEMREHILRSPALVGHSLYG
TLVPTFRTLKDSVGMDPHRVRTVLQRNPAMFTCHLGHNLVEKKTWLRREL
EIDSEEDLKRVLNAEPRLLIRTNERLNAYLRFFMDRMGATVADVRDAVLR
EPWLLMVSLETRWLPNLNAMRERGVEVDFRRHWPAVVNNRD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf