mRNA_H-paniculata_contig1135.871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 332 bits (851), Expect = 3.750e-110 Identity = 154/228 (67.54%), Postives = 183/228 (80.26%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSID 907 ALKV TPS V+A+RTYTVEWTGT +NR EIDL+YCGS C EDDCG+WVTALCPYG GCPD++GDYDIV+P+P++GTSG+GYKVRV + DEEDADCS++FYL+ S EAP G++ GP L VTSP GD A YTVEFDYDNGVGS VDRF IDLY G GDCGT++ ++CDKPTIGCKDSMGDYD++IP +G+Y IRV RFEDD+LY CS TF+I+ Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIE 246
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 331 bits (849), Expect = 9.910e-110 Identity = 150/228 (65.79%), Postives = 187/228 (82.02%), Query Frame = 2 Query: 221 TALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSI 904 +AL+V+TP+ ++VVA R YTVEWTGTG NNR EIDL+YCGS C ED+CG+WVTALCPYG GCPD++GDYDIV+P+P+ GTSG+GYKVRV + D++ DCS++FYLM EAP G+ GP++ VTSP GD AEAGE YTVEFDYDNG+GS V RF IDLY+ G+GDCGT++ T+CDKPTIGCKDSMGDYD++IP+ ++G Y+IRVG FEDD++YGCS F I Sbjct: 6 SALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEI 233
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 326 bits (836), Expect = 4.810e-108 Identity = 156/239 (65.27%), Postives = 190/239 (79.50%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSIDSAYGGDSSSES 940 AL+V+TPS+ +VVA+RTYTVEWTG + R EIDL++CGS C ED CG+WVTALCPYG GCPD++GDYDIV+P+P+ G S +GYKVRV++ +DE+ DCS+ FYLM SE+AP G + G L VTSP GD AEAGE YTVEFDYDNGVGS+VDRF IDLY G GDCGT++T++CDKP+IGCKDSMGDYD++IP ++GDY IRVGRFED+ LYGCS TF+I GGD S S Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTI---MGGDDESMS 253
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 323 bits (828), Expect = 8.390e-107 Identity = 151/242 (62.40%), Postives = 192/242 (79.34%), Query Frame = 2 Query: 215 IVTALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSIDSAYGGDSSSES 940 + +AL+V+TP++ ++VV+ R YTVEW+GTG N R EIDL+YC S C ED+CGEWVTALCPYG GCPD++GDYDIV+P+P+ GTSG+GYKVRV + DE+ +DCS++FYLM +AP + GP++ VTSP GD AEAGE YTVEFDYDNG+GS V RF IDLYA G+GDCGT++ T+CDKPTIGCKDSMGDYD++IP+ ++G Y+IRVG FED+++YGCS F I G D SS S Sbjct: 17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEI---LGADDSSMS 255
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 288 bits (738), Expect = 3.050e-93 Identity = 140/230 (60.87%), Postives = 174/230 (75.65%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSIDSA 913 AL+V++P V+A+R YTVEWTGT R EIDL+YC S+C +D CG+WVTALCPYG GCPDS GDYDI++P+P+ GTS +GYKV V NA DE D CS+DF L+ SE+AP GE G L VTSP GD A AGE YTVE+DY+NG GS DRF +DLY VGGTGDCGT++TT+CD+P+IGC DS GDYD++IP +G YSIRVG F+D+ +Y CS TF +D++ Sbjct: 19 ALEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTS 245
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 288 bits (737), Expect = 4.040e-93 Identity = 143/237 (60.34%), Postives = 182/237 (76.79%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSIDSAYGGDSSS 934 AL+V++P++ ++VVA+ YTVEWTG + R +IDL+YCGS C ED+CG+WVTALCPYG GCPD+ GDYD+V+P+P+ GTS +GYKV V +++DE D CS DF L+ S EAP + G ++ VTSP GD A AG YTVEFDYDNG+GS V+RF IDLY+ GG+GDCGT++TT+CDKP+IGCKDS GDYD+ IP +SG YSIRVG FEDD +YGCS +F I GG+S S Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGA-TSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEI---VGGESMS 249
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 281 bits (719), Expect = 1.570e-90 Identity = 131/189 (69.31%), Postives = 152/189 (80.42%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDS 790 ALKV TPS V+A+RTYTVEWTGT +NR EIDL+YCGS C EDDCG+WVTALCPYG GCPD++GDYDIV+P+P+ GTSG+GYKVRV + DEEDADCS++FYL+ S EAP G++ GP L VTSP GD A YTVEFDYDNGVGSRVDRF IDLY G GDCGT++ ++CDKPTIGCKDS Sbjct: 20 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 276 bits (706), Expect = 2.090e-88 Identity = 136/228 (59.65%), Postives = 172/228 (75.44%), Query Frame = 2 Query: 224 ALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVG-GTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSI 904 AL+V++P++ V+A+RTYTVEWTGT ++R EIDL+YCGS+C ED+CG+WVTALCPYG GCPD+ GDYDIV+P+P+ GTS +GYKV V ++ DE CS DF L+ S +AP GE G L VTSP GD A AG YTVE+DY+NG+GS DRF IDLY+ G GTGDCGT++ T+CDKP+IGC DS GDYD++IP +G YS+RVG F DD ++ CS F I Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEI 243
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 283 bits (723), Expect = 9.370e-88 Identity = 129/183 (70.49%), Postives = 150/183 (81.97%), Query Frame = 2 Query: 356 EDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSI 904 ED+CGEWVTALCPYG GCPD++GDYDIV+P+P+ GTSG+GYKVRV + +DADCS++FYLM S EAP+ G P+L VTSP GD A+AG YTVEFDYDNGVGSRVDRFKIDLY++GGTGDCGTW+ +CDK IGCKDSMGDYD++IP+ V G YSIRVGRFEDD LYGCS F I Sbjct: 13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEI 195
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 231 bits (589), Expect = 8.630e-71 Identity = 120/238 (50.42%), Postives = 158/238 (66.39%), Query Frame = 2 Query: 218 VTALKVITPSSQEVVVAERTYTVEWTGTGKNNRVEIDLFYCGSYCAEDDCGEWVTALCPYGVGGCPDSDGDYDIVLPQPIMGTSGTGYKVRVVNAADEEDADCSEDFYLMMSEEAPMTGEKPGPHLYVTSPRRGDFAEAGETYTVEFDYDNGVGSRVDRFKIDLYAVGGTGDCGTWITTVCDKPTIGCKDSMGDYDIKIPDAVKSGDYSIRVGRFEDDTLYGCSATFSIDSAYGGDSS 931 V AL+V +P++ +++VA + TVEWTGT + R +IDL+YCGS C ED+CG+WVTALCPYG GCPD+ GDYD+V+P+P+ GTS +GYKV V +++DE D CS +F L+ S FD+DNG GS V+RF IDLY GG+GDCGT++T++CDK +IGCKDS GDYD+ IP +SG YSIRVG FED ++GCS +F I GG+SS Sbjct: 17 VNALEVTSPAAGDMIVAASSTTVEWTGTS-SGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEI---IGGESS 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1135.871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1135.871.1 >prot_H-paniculata_contig1135.871.1 ID=prot_H-paniculata_contig1135.871.1|Name=mRNA_H-paniculata_contig1135.871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp MAKRLAVSGLFSLLVVQIVTALKVITPSSQEVVVAERTYTVEWTGTGKNNback to top mRNA from alignment at H-paniculata_contig1135:14057..22662- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1135.871.1 ID=mRNA_H-paniculata_contig1135.871.1|Name=mRNA_H-paniculata_contig1135.871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8606bp|location=Sequence derived from alignment at H-paniculata_contig1135:14057..22662- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1135:14057..22662- >mRNA_H-paniculata_contig1135.871.1 ID=mRNA_H-paniculata_contig1135.871.1|Name=mRNA_H-paniculata_contig1135.871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig1135:14057..22662- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |