mRNA_H-paniculata_contig32236.8683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32236.8683.1
Unique NamemRNA_H-paniculata_contig32236.8683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32236.8683.1 vs. uniprot
Match: D8LF96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF96_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.530e-30
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   16 ALFTQAQIDRVVDDLKETIREKNREMKRYVSDTERSSIDRALVEVGTYAKVFISRATGGDTGLHIAVTLGSLRAAQVMELVTRISQLEDD 285
            A+FTQ Q+DRVVDDLK   RE N + KR+VSD+E  +ID+ L E GTYA V +SRATGGDTGLHIA+TLGSLRAAQVMELV RI+QLE+D
Sbjct:  107 AIFTQEQMDRVVDDLKLRTRETNAKTKRFVSDSEWLTIDQTLGETGTYASVLMSRATGGDTGLHIAITLGSLRAAQVMELVLRIAQLEED 196
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BLAST of mRNA_H-paniculata_contig32236.8683.1 vs. uniprot
Match: A0A6H5L644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L644_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.580e-22
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   16 ALFTQAQIDRVVDDLKETIREKNREMKRYVSDTERSSIDRALVEVGTYAKVFISRATGGDTGLHIAVTLGSLRAAQV-MELVTRISQLEDD 285
            A+FTQ Q+DRVVDDLK   RE N + KR+VSD+E  +ID+ L E GTYA V +SRAT GDTGLHIA+TLGSLRAAQV +E    ++ L DD
Sbjct:  110 AIFTQEQMDRVVDDLKLRTRETNAKTKRFVSDSEWLTIDQTLGETGTYASVLMSRATSGDTGLHIAITLGSLRAAQVFVEEGCDVTILNDD 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32236.8683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF96_ECTSI8.530e-3071.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L644_9PHAE1.580e-2262.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32236contigH-paniculata_contig32236:847..2447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size285
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32236.8683.1prot_H-paniculata_contig32236.8683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32236 847..2447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.3670855-CDS-H-paniculata_contig32236:846..9811622929995.3670855-CDS-H-paniculata_contig32236:846..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 847..981 +
1691481102.876055-CDS-H-paniculata_contig32236:846..9811691481102.876055-CDS-H-paniculata_contig32236:846..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 847..981 +
1622929995.3810358-CDS-H-paniculata_contig32236:1543..16511622929995.3810358-CDS-H-paniculata_contig32236:1543..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 1544..1651 +
1691481102.885498-CDS-H-paniculata_contig32236:1543..16511691481102.885498-CDS-H-paniculata_contig32236:1543..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 1544..1651 +
1622929995.4018822-CDS-H-paniculata_contig32236:2405..24471622929995.4018822-CDS-H-paniculata_contig32236:2405..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 2406..2447 +
1691481102.8940814-CDS-H-paniculata_contig32236:2405..24471691481102.8940814-CDS-H-paniculata_contig32236:2405..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32236 2406..2447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32236.8683.1

>prot_H-paniculata_contig32236.8683.1 ID=prot_H-paniculata_contig32236.8683.1|Name=mRNA_H-paniculata_contig32236.8683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MQYPQALFTQAQIDRVVDDLKETIREKNREMKRYVSDTERSSIDRALVEV
GTYAKVFISRATGGDTGLHIAVTLGSLRAAQVMELVTRISQLEDD
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mRNA from alignment at H-paniculata_contig32236:847..2447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32236.8683.1 ID=mRNA_H-paniculata_contig32236.8683.1|Name=mRNA_H-paniculata_contig32236.8683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1601bp|location=Sequence derived from alignment at H-paniculata_contig32236:847..2447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATATCCCCAGGCTCTGTTCACACAGGCGCAGATAGATCGAGTGGT
GGATGACCTAAAGGAGACGATCAGAGAGAAAAATCGTGAAATGAAGCGAT
ATGTCAGCGATACAGAGCGGAGTAGCATCGATCGCGTGAGTATCGGAGCC
AATCCTTTAGTAAGAAATAGAAATAGAGATAGAGATAGATGTTCAGAGTT
TTGAGTCAGAGTTTGCGTCATCTACATTCCCAGTCTTCGTTCCTGAAGTT
GTTGACCCGCAGCTGGACGTATCTCCTCTAGAGTTGCATGACATTGCTAC
AATTGAAAACTTCAGTTGTTTGGGGGGCTCCACGACAAACACATCGAAAC
TACAGTACAGATAGAGTACAGTACAGTATAGCACAGGACCGTACCGTCCA
TAACAATTCATGCGTCCAGCAGTAGACATCAGATGCAATTCCGTACACAA
ACAGTTTTGCGTAAGAGGAGAGTTTCGACGCGGCGGGGCAACTTCCACAT
GTGAGTCGGTTCAAGCCGCTTGATACGAAATTTGATCCTGGTAAGATGGG
AACACGTTGTAACAAGATTGCGTAGTATCATTATCATGTTTGTCAATATG
TGTTCCATGCTGCCCGTCAATTTACGACATGTAGTCGCCGCTGTTGCAAT
CGTGATTGACTGGATCGTCGTCCGGCTGCGTCTTGAAAACGGCGCAGGCT
CTGGTTGAAGTTGGCACATACGCCAAGGTGTTCATTTCACGAGCGACGGG
GGGCGACACGGGTCTTCATATTGCCGTCACGCTGGGAAGCTTGCGCGCGG
CCCAGGTAGAAGATACTTATTTGCGGGGGAGGTAGTAGGCGACATTAACG
TTTTTCTGCGAAAAGCGCCAAGCAACATCGGAGATGCACGTAGAACACGT
GCGGTGGTACATACTCACGACCAATTTCTGGTCTTACCCAGCGGTCGAAG
CGAAGTGTACTGACGGTCGGTTTACCCAAGAGGAAAATCCTCGGGGTATC
ACGTGAGCCTACGTACTTAGACGAGAAATATCTTCTTCTCGAGCTCGGTT
TGAACCTCCCCGTCGGGTGGAACTAGCTGTCCTCTATAGATCAACCCATG
CCTCTCGTATGCCCCTTGCTCTATTGCGATGTAGATTTTTGTGGAGGAAG
GGTGCGACGCCGCCGCGGTAAACGACGAGGGTGTGTCTGCCATTGATTTA
CTAAGGTAACGCTCATCCTCACGCTTCTTTTCTTGAACAAAAAGTATGAA
GCATAAATTAAAGGCAGCCGTCGTCGCATCATACTGTTGCTACTCTCCAG
GATGTGCAGTACATGGAGGAGATTATACTATTTTTGATGAGATTCACTCT
TGGCAGCACCACGTTTGTGCGCCGTAGAAGATGGTAAATTTCCGAACCTG
GCTACGTTATTCCTCCAATGCCCCTCGAGTAGTGCGCAGCACGGCGATTC
CTTCAGACTCTGTCCAAGATTGTACAAGTATTATTTCGGAACGTGGTCGC
GCGTGTTTCTCAGTTTATTTTTCCTGCCACTGCACGCCACCAGTGCTAAT
TTTGGCAAGGTAATGGAGCTAGTAACGCGAATCAGCCAGCTGGAAGATGA
C
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Coding sequence (CDS) from alignment at H-paniculata_contig32236:847..2447+

>mRNA_H-paniculata_contig32236.8683.1 ID=mRNA_H-paniculata_contig32236.8683.1|Name=mRNA_H-paniculata_contig32236.8683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig32236:847..2447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATATCCCCAGGCTCTGTTCACACAGGCGCAGATAGATCGAGTGGT
GGATGACCTAAAGGAGACGATCAGAGAGAAAAATCGTGAAATGAAGCGAT
ATGTCAGCGATACAGAGCGGAGTAGCATCGATCGCATGCAATATCCCCAG
GCTCTGTTCACACAGGCGCAGATAGATCGAGTGGTGGATGACCTAAAGGA
GACGATCAGAGAGAAAAATCGTGAAATGAAGCGATATGTCAGCGATACAG
AGCGGAGTAGCATCGATCGCGCTCTGGTTGAAGTTGGCACATACGCCAAG
GTGTTCATTTCACGAGCGACGGGGGGCGACACGGGTCTTCATATTGCCGT
CACGCTGGGAAGCTTGCGCGCGGCCCAGGCTCTGGTTGAAGTTGGCACAT
ACGCCAAGGTGTTCATTTCACGAGCGACGGGGGGCGACACGGGTCTTCAT
ATTGCCGTCACGCTGGGAAGCTTGCGCGCGGCCCAGGTAATGGAGCTAGT
AACGCGAATCAGCCAGCTGGAAGATGACGTAATGGAGCTAGTAACGCGAA
TCAGCCAGCTGGAAGATGAC
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