mRNA_H-paniculata_contig32235.8682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32235.8682.1
Unique NamemRNA_H-paniculata_contig32235.8682.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 190 bits (483), Expect = 7.680e-51
Identity = 117/297 (39.39%), Postives = 172/297 (57.91%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQE-SSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRLR 888
            F+++DLG +S +LG+ ++RDR + T+ ISQ  Y+  VLKR+             E KP+   L + G    E S   R AN  E + ++G L Y +T T+ D+A AV   ++ M  PS+E +   KRI R+     + G TF  +     L  +  ADWA   E R+ST+  IF+++G   SWCS+KQ  V+ SSTEA+Y+A   A +E I+LR LL +IG   + ST + E+N++AI LS+    H +TKHI V +H +RE V+   + + Y +T   LADIL KGL R  F++LR
Sbjct: 1059 FKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRF----------NMEECKPVSTPL-EPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 177 bits (450), Expect = 3.140e-50
Identity = 108/297 (36.36%), Postives = 158/297 (53.20%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGA--VLLDIGTGVQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTF-GDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQR 882
            F M DLG    +LG+E+ RDRP   + +SQ  Y+ + L +Y      G+ D  P   P+     L+ +     +    ++A        LGSLMYA  GT  D+A+ V   ++    P +E +    R++R+     D    + G       L  +V ADWA ++ DR+S T  +F ++ GA SW S++Q     SSTEA+Y+A     KE ++LR  L  IG   +G T L  +N+SAI LSK +  H +TKHI VR+H IRE    G +  +YV TGNQ+AD+L KGL R K ++
Sbjct:   22 FEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQY------GMADCRPVSTPMAQNQKLVKLSEAEIDPKPYQSA--------LGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 304          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: M5BWJ0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10758 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BWJ0_THACB)

HSP 1 Score: 186 bits (471), Expect = 6.430e-50
Identity = 114/296 (38.51%), Postives = 165/296 (55.74%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRY----VEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKF 876
            F + DLG     +G+E+ RDR  GT+ ISQ  YI ++LKR+     +  +  + + P  PK      LD  T           N T  +  +GSLMYA   T+ DIAYA    A+   +P  E +   +R+ R+     +LG  F D+S    L  FV AD+A      +ST+  IFK+ GG+ +W SRKQ  ++ SSTEA+YVAA  A +E+I++R  L  +GF   G T +Y +N+S++ LSK  G H  TKHI V++H IRE +    + LK++ T  Q+AD+L K L R+KF
Sbjct:  454 FDIVDLGEPQMFVGVEIERDRKAGTLKISQRRYIEDILKRFGMENCKPCVTPMAEVPNLPK------LDAPT----------VNRTLYQRGIGSLMYAMISTRGDIAYATGLLAQHAANPGEEHWKALQRVLRYLRGSTNLGIIF-DRSRPSELVGFVDADYAGDPNTSRSTSGWIFKMTGGSIAWSSRKQPTISLSSTEAEYVAAASAARELIWVRGFLSELGFTQNGPTVVYTDNQSSMALSKNPGNHQNTKHIRVKYHFIREMIELKEIELKFIPTDEQIADMLTKPLGRVKF 732          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 175 bits (443), Expect = 1.470e-48
Identity = 111/297 (37.37%), Postives = 165/297 (55.56%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSRRN-ANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRLR 888
            ++MKDLG LS +LGI V +D+    + + Q  YI  +LK+Y      G+    P   P      DI   +++     N  + +  + M+GSL+YA+  T+ DIA AV   ++   +P+    +  KRI R+     +L   F D + +  L  F  ADWA  ++DR STT +IF L+GGA SW S+KQ  V  S+ EA+YVA  +A +E  +LR LL  +G   +  T + E+N+ AI ++K    H +TKHI +R+H IRE V+ G + L+Y  T    ADIL K L+R KF+  R
Sbjct:   78 YKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKY------GMDKANPVATPA-----DISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKF-DCAGNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 182 bits (461), Expect = 1.740e-48
Identity = 103/297 (34.68%), Postives = 168/297 (56.57%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTG-VQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRLR 888
            F +KD+G L+  LG+++ +    G + + Q  Y   VLK++      G+ +  P   P+     DI T  V+ S      +  + +  +GSL+Y ST T+ DIAYAV+  AR    P+++ ++  KRI R+     +LG  +       C+  F  ADWA    DRKS +  +F+++G A SW S+KQ  V  S+ EA+Y+A   A +E +++R L+  +     G T ++E+N+SAI ++K S  H + KHI +++H IRE + GG++ L+Y  T + +AD+  KGLS+ KF +LR
Sbjct:  457 FEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKF------GMENSKPVSTPV-----DINTKLVKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIG-FSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLR 741          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 172 bits (435), Expect = 3.310e-48
Identity = 108/290 (37.24%), Postives = 155/290 (53.45%), Query Frame = 1
Query:    7 MKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSR-RNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIK 873
            M DLG +S +LGI++ RD   GT  +SQ  YI  +L R+         D  P   P+    L   T   ES +          R  +G LMYA+ GT+ DI +AV   A+  ++P +  +   KR+FR+      L   +G +  +  LE FV AD A   E R++ T  +F ++GGA SW S+KQ+LVT S+ E++YVA   A KE ++LR  +G +       TTLY +N++ I L+K    H +TKHI VR+H IR  +  G + L Y  TG+  ADIL K L  +K
Sbjct:    1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARF------NFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQFAQNPGQPHWDAVKRVFRYLLGTRTLSRVYGGEKRE--LEGFVDADGATQ-EHRRAITGYVFLVDGGAVSWASKKQELVTLSTAESEYVATTHAAKEAVWLRRFIGEVFGPLAEPTTLYNDNQATIALTKDGSYHTRTKHIDVRYHFIRYSINAGSIRLLYCPTGDMTADILTKALPSVK 281          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 172 bits (437), Expect = 1.620e-47
Identity = 100/297 (33.67%), Postives = 167/297 (56.23%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTG-VQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRLR 888
            F++KD+G L  +LG++V ++  +G + I Q  Y   ++K+Y      G+ +  P   P+     D+ +  V         N  E +  +GSL+Y S+ T+ DI +AV+  A+   + + E ++  KRIFR+     + G  + + +N  C+  F  ADWA  + DRKST+   F++NG A SW S+KQ  V  S+ EA+YVA   A +E +++R LL  +        T+YE+N+SAI +SK    H ++KHI +++H +R+ V    L + Y  TG+ LAD+  KG+ + +F++LR
Sbjct:   92 FQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKY------GMENCKPVETPV-----DLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLR 374          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 172 bits (435), Expect = 3.270e-47
Identity = 104/283 (36.75%), Postives = 154/283 (54.42%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTF-GDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADI 846
            F + DLG ++ +LGI V RDR   ++ +SQ  Y+ EVL R+      G  D  P   P+ A    + T   E   R          +LGS+M+A  GT+ D+A+ +   ++    P+ E      R+ R+     D    + G Q  +  L  FV ADWA +V DR+S +  +FK+  GA SW S+KQ     SST+A+YVA   A KE+++L  L   I   C+G TTL+ +N+SA+ +++    H +TKHIG R H +RE V  G L LKY+ TG+Q+AD+
Sbjct:  117 FNITDLGDINWILGIHVERDRTKRSISLSQERYVEEVLSRF------GQQDAHPMVTPMLANQRLVRTEKPEVDIRTYQR------ILGSVMWAMLGTRPDLAFTIGSLSQFSSAPTEEALHALMRMLRYLCRTSDTRLVYRGTQKEE--LTGFVDADWAGNVNDRRSISGFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 179 bits (455), Expect = 3.980e-47
Identity = 106/293 (36.18%), Postives = 156/293 (53.24%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSRRNANSTECRGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQ 879
            F M DLG    +L +E+ RDRP   + +SQ  Y+ + L+R+      G+ D  P   P+      +     E   +   ++      LGSLMYA   T+ D+A+AV   ++    P +E +    R++R+     D    +   + +  L  +V ADWA  + DR+S T  +F ++G A +W S+KQ     SSTEA+Y+A     KE I+LR  L  IG    GST L  +N+SAI L+K    H +TKHI VR+H IRE    G +  +YV TGNQ+AD+L KGL+R K +
Sbjct:  843 FEMTDLGEARWILSMEILRDRPRRLLELSQHQYVEKALERH------GMADCRPVSTPMAQNQKHLKLPQAEIDPKPYQSA------LGSLMYAMLRTRPDLAFAVGALSQHAATPGKEHWHALMRVYRYLRGTSDRRLVYNGTAKEKHLLGYVDADWAADINDRRSVTGFVFLISGAAVTWSSKKQSSTAQSSTEAEYMAGAHGTKEAIWLRAFLSEIGQAISGSTPLLIDNQSAIALAKNPEFHNRTKHIAVRYHFIREKYDSGDITPEYVPTGNQVADVLTKGLAREKHE 1123          
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 175 bits (444), Expect = 5.610e-47
Identity = 116/300 (38.67%), Postives = 159/300 (53.00%), Query Frame = 1
Query:    1 FRMKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDKPPEPKPLGAVLLDIGTGVQESSSRRNANSTEC----RGMLGSLMYASTGTKLDIAYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQS-NDHCLEEFVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAAGEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHIGVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRL 885
            F ++D G LS  LGI++  +     + ISQG Y++ VL+R+       ++D  P   P       I T V  S    N  ST C    R ++G LMYA   T+ D++Y ++  +    +P    +   K + R+     D    +  QS N   LE FV ADWA H +DRKS T  IFK+ G   SW + +Q  +  S+TEA+Y+AA  A  E I+LR +L   G       TLYE+N+S I LS+  G H +TKHI +R H IRE V  GI+ LKY+ + NQ ADIL KGL   KF  L
Sbjct:  284 FEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRF------NMLDCKPRSIP-------IETKVDLSI---NTLSTTCSQPYRQLIGCLMYAMLATRPDLSYCLNYFSHFQSNPEEVHWMYLKNVLRYIKGTLDYSIIYRKQSGNIPILEGFVDADWANH-KDRKSVTGYIFKIYGSIVSWSTNRQPTIALSTTEAEYMAASYATCEAIWLRSILKDFGVELFEPITLYEDNQSCIQLSQNPGHHRRTKHIDIRHHFIREKVEEGIVKLKYITSENQQADILTKGLPVSKFNHL 566          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32235.8682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9IUY0_PARCT7.680e-5139.39Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A401H2X4_9APHY3.140e-5036.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
M5BWJ0_THACB6.430e-5038.51Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
A0A0S7JP25_9TELE1.470e-4837.37POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A498M2F0_LABRO1.740e-4834.68Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A060S8R4_PYCCI3.310e-4837.24Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A7D9M6E1_PARCT1.620e-4733.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4L116_9AGAM3.270e-4736.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7NTQ9_9APHY3.980e-4736.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A2S2NPY8_SCHGA5.610e-4738.67Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32235contigH-paniculata_contig32235:1634..2593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score176.0
Seed ortholog evalue2.6e-41
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size915
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32235.8682.1prot_H-paniculata_contig32235.8682.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32235 1640..2593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.2811065-UTR-H-paniculata_contig32235:1633..16391622929995.2811065-UTR-H-paniculata_contig32235:1633..1639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32235 1634..1639 +
1691481102.844334-UTR-H-paniculata_contig32235:1633..16391691481102.844334-UTR-H-paniculata_contig32235:1633..1639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32235 1634..1639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.2978272-CDS-H-paniculata_contig32235:1639..17571622929995.2978272-CDS-H-paniculata_contig32235:1639..1757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32235 1640..1757 +
1691481102.8557596-CDS-H-paniculata_contig32235:1639..17571691481102.8557596-CDS-H-paniculata_contig32235:1639..1757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32235 1640..1757 +
1622929995.3149803-CDS-H-paniculata_contig32235:1802..25931622929995.3149803-CDS-H-paniculata_contig32235:1802..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32235 1803..2593 +
1691481102.866757-CDS-H-paniculata_contig32235:1802..25931691481102.866757-CDS-H-paniculata_contig32235:1802..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32235 1803..2593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32235.8682.1

>prot_H-paniculata_contig32235.8682.1 ID=prot_H-paniculata_contig32235.8682.1|Name=mRNA_H-paniculata_contig32235.8682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
MKDLGSLSRVLGIEVRRDRPNGTMPISQGGYIREVLKRYVEVLIPGLVDK
PPEPKPLGAVLLDIGTGVQESSSRRNANSTECRGMLGSLMYASTGTKLDI
AYAVHQAARRMEDPSREGFSTCKRIFRHFSTVPDLGSTFGDQSNDHCLEE
FVHADWAEHVEDRKSTTRDIFKLNGGATSWCSRKQQLVTWSSTEAKYVAA
GEAGKEMIYLRDLLGSIGFGCRGSTTLYENNKSAINLSKGSGAHCKTKHI
GVRWHGIREWVRGGILALKYVQTGNQLADILAKGLSRIKFQRLRILLITA
CW*
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mRNA from alignment at H-paniculata_contig32235:1634..2593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32235.8682.1 ID=mRNA_H-paniculata_contig32235.8682.1|Name=mRNA_H-paniculata_contig32235.8682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=960bp|location=Sequence derived from alignment at H-paniculata_contig32235:1634..2593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTAGGATGAAGGACTTGGGCTCCCTCTCGCGCGTGCTGGGGATAGAAGT ACGACGTGACCGCCCCAATGGTACCATGCCAATATCCCAAGGTGGCTACA TCCGCGAGGTACTGAAAAGATACGGTTTTCACGAGTGTTGAGGCGTGTCC ACCCCTGTAGAGGGAAAAGTGGAGGTTTTGATTCCCGGGTTGGTCGACAA GCCCCCCGAACCAAAACCACTTGGGGCTGTACTGTTGGACATAGGCACAG GAGTACAAGAAAGCAGTAGTAGAAGAAATGCCAATTCAACTGAATGCAGA GGCATGTTAGGATCACTCATGTACGCCTCGACAGGAACTAAACTTGATAT AGCATATGCGGTACACCAAGCAGCACGTCGTATGGAAGACCCATCTCGAG AAGGCTTCAGTACATGCAAGCGCATTTTCCGTCATTTCAGCACTGTGCCT GACCTCGGCAGTACGTTTGGCGATCAGAGTAATGATCACTGTCTGGAAGA ATTTGTTCATGCCGATTGGGCGGAACATGTCGAGGACCGAAAGTCCACAA CAAGAGACATATTCAAGCTGAACGGTGGTGCGACAAGTTGGTGCTCTAGG AAGCAACAGTTAGTCACATGGTCCAGTACAGAGGCAAAGTACGTTGCTGC AGGAGAAGCGGGAAAGGAGATGATCTATCTTCGGGATTTGCTAGGATCGA TAGGTTTCGGATGCAGGGGGAGCACGACATTATATGAGAACAACAAGTCA GCTATCAATCTCAGTAAGGGATCTGGTGCGCACTGCAAGACGAAGCACAT TGGAGTGCGCTGGCATGGAATTCGAGAGTGGGTTAGGGGAGGAATATTGG CGTTGAAATACGTGCAGACCGGCAACCAACTTGCTGATATTTTAGCGAAA GGACTGAGCAGAATAAAGTTTCAGAGACTGAGAATTTTACTCATAACAGC ATGTTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32235:1634..2593+

>mRNA_H-paniculata_contig32235.8682.1 ID=mRNA_H-paniculata_contig32235.8682.1|Name=mRNA_H-paniculata_contig32235.8682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig32235:1634..2593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACTTGGGCTCCCTCTCGCGCGTGCTGGGGATAGAAGTACGACG
TGACCGCCCCAATGGTACCATGCCAATATCCCAAGGTGGCTACATCCGCG
AGGTACTGAAAAGATACGATGAAGGACTTGGGCTCCCTCTCGCGCGTGCT
GGGGATAGAAGTACGACGTGACCGCCCCAATGGTACCATGCCAATATCCC
AAGGTGGCTACATCCGCGAGGTACTGAAAAGATACGTGGAGGTTTTGATT
CCCGGGTTGGTCGACAAGCCCCCCGAACCAAAACCACTTGGGGCTGTACT
GTTGGACATAGGCACAGGAGTACAAGAAAGCAGTAGTAGAAGAAATGCCA
ATTCAACTGAATGCAGAGGCATGTTAGGATCACTCATGTACGCCTCGACA
GGAACTAAACTTGATATAGCATATGCGGTACACCAAGCAGCACGTCGTAT
GGAAGACCCATCTCGAGAAGGCTTCAGTACATGCAAGCGCATTTTCCGTC
ATTTCAGCACTGTGCCTGACCTCGGCAGTACGTTTGGCGATCAGAGTAAT
GATCACTGTCTGGAAGAATTTGTTCATGCCGATTGGGCGGAACATGTCGA
GGACCGAAAGTCCACAACAAGAGACATATTCAAGCTGAACGGTGGTGCGA
CAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACATGGTCCAGTACAGAG
GCAAAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGATGATCTATCTTCG
GGATTTGCTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTAT
ATGAGAACAACAAGTCAGCTATCAATCTCAGTAAGGGATCTGGTGCGCAC
TGCAAGACGAAGCACATTGGAGTGCGCTGGCATGGAATTCGAGAGTGGGT
TAGGGGAGGAATATTGGCGTTGAAATACGTGCAGACCGGCAACCAACTTG
CTGATATTTTAGCGAAAGGACTGAGCAGAATAAAGTTTCAGAGACTGAGA
ATTTTACTCATAACAGCATGTTGGTGATGGAGGTTTTGATTCCCGGGTTG
GTCGACAAGCCCCCCGAACCAAAACCACTTGGGGCTGTACTGTTGGACAT
AGGCACAGGAGTACAAGAAAGCAGTAGTAGAAGAAATGCCAATTCAACTG
AATGCAGAGGCATGTTAGGATCACTCATGTACGCCTCGACAGGAACTAAA
CTTGATATAGCATATGCGGTACACCAAGCAGCACGTCGTATGGAAGACCC
ATCTCGAGAAGGCTTCAGTACATGCAAGCGCATTTTCCGTCATTTCAGCA
CTGTGCCTGACCTCGGCAGTACGTTTGGCGATCAGAGTAATGATCACTGT
CTGGAAGAATTTGTTCATGCCGATTGGGCGGAACATGTCGAGGACCGAAA
GTCCACAACAAGAGACATATTCAAGCTGAACGGTGGTGCGACAAGTTGGT
GCTCTAGGAAGCAACAGTTAGTCACATGGTCCAGTACAGAGGCAAAGTAC
GTTGCTGCAGGAGAAGCGGGAAAGGAGATGATCTATCTTCGGGATTTGCT
AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTATATGAGAACA
ACAAGTCAGCTATCAATCTCAGTAAGGGATCTGGTGCGCACTGCAAGACG
AAGCACATTGGAGTGCGCTGGCATGGAATTCGAGAGTGGGTTAGGGGAGG
AATATTGGCGTTGAAATACGTGCAGACCGGCAACCAACTTGCTGATATTT
TAGCGAAAGGACTGAGCAGAATAAAGTTTCAGAGACTGAGAATTTTACTC
ATAACAGCATGTTGGTGA
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