mRNA_H-paniculata_contig32182.8662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32182.8662.1
Unique NamemRNA_H-paniculata_contig32182.8662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.530e-33
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   34 QILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            Q+L +LQ L RGNCFDD+ Q SLMS+  A  T HKFC+HFA EL++EHI LPTG   ++VM  YD+LG TGA+GSTDVTHI W  CP
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 89
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.160e-32
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:   34 QILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            Q+L +LQ+L RGNCFDD+ Q SLMS+  A  T HKFC+HFA EL++EHI LPTG   ++VM  YD+LG TGA+GSTDVTHI W  CP
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 89
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.200e-31
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:   28 SHQILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            S +IL +LQ+L RGNCFDD+ Q SLMS+  A  T HKFC+HFA EL++EHI LPTG   ++VM  YD+LG TGA+GSTDVTHI W  CP
Sbjct:  248 STKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 336
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.660e-29
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    7 CVYPFSPSHQILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            C +P  P  Q+LA LQ+L RGN F D+   S +S  T   T H+FC++FA ELYDE++ LPTG+   KVM +YD++GF GAVGSTDVTHI W  CP
Sbjct:   75 CCFP-PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCP 169
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.170e-28
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   52 QVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            QVL +GNCFDDV Q S MS+S A  T HKFC HFA E++DEHI LPTG   ++VM  + QLG+TGA GSTDVTHI W+ CP
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCP 122
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.670e-27
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   34 QILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            ++LA LQ+L RGN F D+   S +S  T   T H+FC++FA ELYDE++ LPTG+   KVM +YD++GF GAVGSTDVTHI W  CP
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCP 260
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.810e-27
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   34 QILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            ++LA LQ+L RGNCF D+   S +S  TA  T H+F  +FA E+Y EHI LPTG   +KVM +YD+LGF+GA GSTDVTHI W  CP
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCP 244
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.070e-27
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:   31 HQILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQ--AFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            H++LA L +L RGNCF  + Q S MS +T     HKFC+HFA E+YDEHI LP+ Q    + VM +YD+LGF+GA+GS DVTHI W  CP
Sbjct:  124 HKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCP 213
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.200e-25
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   52 QVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            +VL +G CFDDV Q S MS+S A  T HKF  HFA E++DEHI LPTG   ++VM  + QLG TGA GSTDVTHI W+ CP
Sbjct:    3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCP 83
[Close]
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.720e-25
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   31 HQILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEHFALELYDEHILLPTGQ--AFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP 294
            H++LA L +L RGNCF  + Q S MS  T     HKFC+HFA E+YDEHI LP+ Q    + VM +YD+LGF+GA+GS DVTHI W  CP
Sbjct:   97 HKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCP 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32182.8662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE3.530e-3363.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.160e-3263.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE3.200e-3162.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.660e-2955.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE3.170e-2864.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE4.670e-2756.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE5.810e-2757.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE7.070e-2755.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIW4_9PHAE1.200e-2560.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.720e-2555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32182contigH-paniculata_contig32182:938..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog3750.XP_008391188.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs2EIAJ@1,2SNS5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.1194544-CDS-H-paniculata_contig32182:937..12311622929993.1194544-CDS-H-paniculata_contig32182:937..1231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 938..1231 +
1691481101.8975518-CDS-H-paniculata_contig32182:937..12311691481101.8975518-CDS-H-paniculata_contig32182:937..1231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 938..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32182.8662.1prot_H-paniculata_contig32182.8662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32182 938..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32182.8662.1

>prot_H-paniculata_contig32182.8662.1 ID=prot_H-paniculata_contig32182.8662.1|Name=mRNA_H-paniculata_contig32182.8662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MFCVYPFSPSHQILASLQVLCRGNCFDDVSQFSLMSESTALVTSHKFCEH
FALELYDEHILLPTGQAFEKVMHEYDQLGFTGAVGSTDVTHIKWDCCP
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mRNA from alignment at H-paniculata_contig32182:938..1231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32182.8662.1 ID=mRNA_H-paniculata_contig32182.8662.1|Name=mRNA_H-paniculata_contig32182.8662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig32182:938..1231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTGCGTGTACCCCTTCTCCCCCTCGCACCAGATTCTTGCTTCCCT
TCAGGTACTGTGTAGGGGTAACTGCTTTGACGACGTCTCCCAGTTCTCCC
TCATGAGCGAGTCGACGGCATTAGTCACGTCCCACAAATTCTGCGAGCAT
TTCGCGTTGGAGCTGTATGATGAACACATCCTCCTCCCTACCGGGCAGGC
TTTCGAGAAGGTCATGCATGAGTATGACCAGTTGGGATTCACCGGGGCGG
TCGGCTCAACGGATGTTACCCACATCAAATGGGATTGCTGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig32182:938..1231+

>mRNA_H-paniculata_contig32182.8662.1 ID=mRNA_H-paniculata_contig32182.8662.1|Name=mRNA_H-paniculata_contig32182.8662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig32182:938..1231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTGCGTGTACCCCTTCTCCCCCTCGCACCAGATTCTTGCTTCCCT
TCAGGTACTGTGTAGGGGTAACTGCTTTGACGACGTCTCCCAGTTCTCCC
TCATGAGCGAGTCGACGGCATTAGTCACGTCCCACAAATTCTGCGAGCAT
TTCGCGTTGGAGCTGTATGATGAACACATCCTCCTCCCTACCGGGCAGGC
TTTCGAGAAGGTCATGCATGAGTATGACCAGTTGGGATTCACCGGGGCGG
TCGGCTCAACGGATGTTACCCACATCAAATGGGATTGCTGCCCGATGTTC
TGCGTGTACCCCTTCTCCCCCTCGCACCAGATTCTTGCTTCCCTTCAGGT
ACTGTGTAGGGGTAACTGCTTTGACGACGTCTCCCAGTTCTCCCTCATGA
GCGAGTCGACGGCATTAGTCACGTCCCACAAATTCTGCGAGCATTTCGCG
TTGGAGCTGTATGATGAACACATCCTCCTCCCTACCGGGCAGGCTTTCGA
GAAGGTCATGCATGAGTATGACCAGTTGGGATTCACCGGGGCGGTCGGCT
CAACGGATGTTACCCACATCAAATGGGATTGCTGCCCG
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