mRNA_H-paniculata_contig32182.8663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32182.8663.1
Unique NamemRNA_H-paniculata_contig32182.8663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.100e-16
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:    3 RMEHKKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            + E K  YLLVDNGYH+W  L+P SK  +  G+   SK LES RKDVEC+FG+LKGRFRI K
Sbjct:  243 QFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINK 304
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.340e-16
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:    3 RMEHKKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            + E K  YLLVDNGYH+W  L+P SK  +  G+   SK LES RKDVEC+FG+LKGRFRI K
Sbjct:  334 QFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINK 395
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.150e-16
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  YLLVDNGYH+W +L+  SK  L++ +   SK LESVRKDVECFFG+LKGRFRI K
Sbjct:  279 KGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILK 336
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.630e-16
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  YLLVDNGYH+W  L+P SK  +   +   SK LESVRKDVECFFG++KGRFRI K
Sbjct:  322 KGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILK 379
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 9.190e-16
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  YLLVDNGYH+W  L+P SK  +   +   SK LESVRKDVECFFG++KG FRI K
Sbjct:   81 KGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILK 138
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.680e-16
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  YLLVDNGYH+W +LM  +K  L++ +   SK LESVRKDVECFFG+LKG FRI+K
Sbjct:  264 KGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQK 321
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.960e-15
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  YL+VDNGYH+W ML+  SK  L++ +   SK LESVRKDVECFFG+LK RFRI K
Sbjct:  293 KGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILK 350
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BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.590e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRI 182
            K  Y+LVDNGYH+W +L+  SK  L++ +   SK LESVRKDVECFFG+LKGR RI
Sbjct:  124 KGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRI 179
[Close]
BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.080e-15
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:   15 KKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            K  Y L DNGYH+W +L+  SK  L++ +   SK LESVRKDVECFFG+LKGRFRI K
Sbjct:  169 KGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILK 226
[Close]
BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Match: A0A7S3PWF4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWF4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.720e-14
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:    3 RMEHKKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*SKTLESVRKDVECFFGVLKGRFRIRK 188
            R+ ++ ++L+VDNGY +WA  +P  KRS    E R S  LES+RKDVEC FG+LKGRFRI K
Sbjct:   59 RVRYRGIWLMVDNGYLDWACTIPPLKRSNDVNEIRWSHWLESMRKDVECAFGILKGRFRILK 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32182.8663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE1.100e-1661.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.340e-1661.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.150e-1665.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE4.630e-1663.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE9.190e-1662.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE9.680e-1663.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.960e-1563.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI6.590e-1562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE9.080e-1562.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3PWF4_9STRA3.720e-1456.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32182contigH-paniculata_contig32182:1446..2037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size194
Cds size105
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32182.8663.1prot_H-paniculata_contig32182.8663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32182 1451..1953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.0299072-UTR-H-paniculata_contig32182:1445..14501622929993.0299072-UTR-H-paniculata_contig32182:1445..1450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32182 1446..1450 +
1691481101.8614664-UTR-H-paniculata_contig32182:1445..14501691481101.8614664-UTR-H-paniculata_contig32182:1445..1450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32182 1446..1450 +
1622929993.0774047-UTR-H-paniculata_contig32182:1953..20371622929993.0774047-UTR-H-paniculata_contig32182:1953..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32182 1954..2037 +
1691481101.8886886-UTR-H-paniculata_contig32182:1953..20371691481101.8886886-UTR-H-paniculata_contig32182:1953..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32182 1954..2037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.045343-CDS-H-paniculata_contig32182:1450..14981622929993.045343-CDS-H-paniculata_contig32182:1450..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 1451..1498 +
1691481101.8721123-CDS-H-paniculata_contig32182:1450..14981691481101.8721123-CDS-H-paniculata_contig32182:1450..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 1451..1498 +
1622929993.0580878-CDS-H-paniculata_contig32182:1896..19531622929993.0580878-CDS-H-paniculata_contig32182:1896..1953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 1897..1953 +
1691481101.880702-CDS-H-paniculata_contig32182:1896..19531691481101.880702-CDS-H-paniculata_contig32182:1896..1953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32182 1897..1953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32182.8663.1

>prot_H-paniculata_contig32182.8663.1 ID=prot_H-paniculata_contig32182.8663.1|Name=mRNA_H-paniculata_contig32182.8663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MEHKKVYLLVDNGYHEWAMLMPLSKRSLTDGETR*
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mRNA from alignment at H-paniculata_contig32182:1446..2037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32182.8663.1 ID=mRNA_H-paniculata_contig32182.8663.1|Name=mRNA_H-paniculata_contig32182.8663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=592bp|location=Sequence derived from alignment at H-paniculata_contig32182:1446..2037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGGATGGAACACAAGAAAGTCTACCTGCTCGTGGACAACGGGTATCAT
GAGGTGAGAATGTCACGGGCATGGTTCTATTAGGCAAAGATTTAATATTA
CTGAGGACTACAGGTTAAATTCAATGAAAGCCCAAACGCGAAGGGTTAGG
GTTAGGTTTAAGTGCGTGTCGTACTACCATCACATCTAAAGTGCGAGTTC
ACAATGTTCACAATGTTTAAAATTAGCGAGACTAATGCGCTCCGCAACCA
AACACACATTTCAAAATTGAGGAATTCGAATACAATTGATTTTTGAATCA
ATTTTCATTTATTATGCCGGCATTGCCGCATGGTGCGCCCGTTTCAGTTT
GTGATAACGGTCTCGTACGCGAAACCAACACACATACATCCCCGCTCTGT
GGAAACCCAACACCCTCTCATCGACCCCATCGCATCTTCACACACATACA
GTGGGCTATGCTCATGCCCCTTTCAAAGCGCTCCTTGACCGATGGGGAGA
CACGGTGAAGCAAGACGTTGGAGAGCGTACGAAAGGATGTGGAGTGTTTC
TTCGGCGTCCTGAAGGGCCGGTTCAGAATCCGCAAGTTTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig32182:1446..2037+

>mRNA_H-paniculata_contig32182.8663.1 ID=mRNA_H-paniculata_contig32182.8663.1|Name=mRNA_H-paniculata_contig32182.8663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig32182:1446..2037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACAAGAAAGTCTACCTGCTCGTGGACAACGGGTATCATGAGAT
GGAACACAAGAAAGTCTACCTGCTCGTGGACAACGGGTATCATGAGTGGG
CTATGCTCATGCCCCTTTCAAAGCGCTCCTTGACCGATGGGGAGACACGG
TGATGGGCTATGCTCATGCCCCTTTCAAAGCGCTCCTTGACCGATGGGGA
GACACGGTGA
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