mRNA_H-paniculata_contig32164.8659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32164.8659.1
Unique NamemRNA_H-paniculata_contig32164.8659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: D7G1I7_ECTSI (Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1I7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.860e-24
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   13 SYRQIRRWGMAACVRNCCFEEADHPWLLHEVRVLPHLLMRLSDDADEYDFDEKV 174
            S   +RRWG+A CVRNCCFEE DHPWLLHEV+V+PHLLMRL+DD DEYDF+EKV
Sbjct:  304 SANPVRRWGVAGCVRNCCFEELDHPWLLHEVKVVPHLLMRLADDKDEYDFEEKV 357          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: H2XL93_CIOIN (Protein HGH1 homolog n=2 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL93_CIOIN)

HSP 1 Score: 55.1 bits (131), Expect = 2.400e-7
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   28 RRWGMAACVRNCCFEEADHPWLLHE-VRVLPHLLMRLSDDADEYDFDE 168
            RR G+AA +RNCCFE   H WLL E V +LPHLL+ L+  A+E+D D+
Sbjct:  205 RRGGIAATIRNCCFEYESHDWLLSEDVDLLPHLLLPLA-GAEEFDDDD 251          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: A0A7S2RP18_9STRA (Protein HGH1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP18_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.690e-7
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   13 SYRQIRRWGMAACVRNCCFEEADHPWLLHEVRVLPHLLMRLS 138
            S    RR G+AA +RNCC+E +DH WLLH+++ L ++L  L+
Sbjct:   26 SSNMTRRRGVAAALRNCCYETSDHDWLLHDLKTLNYILFALA 67          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: A0A6P8HXK7_ACTTE (Protein HGH1 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HXK7_ACTTE)

HSP 1 Score: 51.6 bits (122), Expect = 4.040e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLLH-EVRVLPHLLMRLS--DDADEYDFDE 168
            +RR GMAA ++NCCF+   H WLL  EV +L HLL+ L+  ++ DE D D+
Sbjct:  197 VRRGGMAAVLKNCCFDTEYHEWLLSDEVDILXHLLLPLAGGEELDEADMDK 247          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: UPI000C253778 (protein HGH1 homolog n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C253778)

HSP 1 Score: 50.8 bits (120), Expect = 7.610e-6
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLLHE-VRVLPHLLMRL--SDDADEYDFDE 168
            IRR G+ A ++NCCFEE  H WLL E V +LP LL+ L  S++ DE D D+
Sbjct:  210 IRRGGIIATLKNCCFEEEFHEWLLGEKVDILPSLLLPLAGSEEFDEEDNDK 260          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: K1QN54_CRAGI (Protein HGH1 homolog n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QN54_CRAGI)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLLHE-VRVLPHLLMRLSDDADEYDFDE 168
            IRR G+ +C++NCCF+E  H WLL + V +L +LL+ L+   +E+D D+
Sbjct:  259 IRRLGVVSCIKNCCFDEEHHDWLLSDKVDILSYLLLPLA-GPEEFDDDD 306          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: UPI0006258FA9 (protein HGH1 homolog isoform X1 n=2 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006258FA9)

HSP 1 Score: 50.1 bits (118), Expect = 1.420e-5
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLL-HEVRVLPHLLMRLS 138
            +RR+G+ A +RNCCF+  +H WLL  EV +LPH+L+ L+
Sbjct:  208 VRRYGIVATLRNCCFDIDNHDWLLGSEVDILPHILLPLA 246          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: UPI00145533FC (protein HGH1 homolog n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145533FC)

HSP 1 Score: 49.7 bits (117), Expect = 1.950e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLLHE-VRVLPHLLMRLS 138
            +RR G+ A +RNCCFE   H WLL E V +LPHLL+ L+
Sbjct:  205 VRRRGIVAALRNCCFETDYHDWLLSEAVDILPHLLLPLA 243          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: UPI0008F9A92E (protein HGH1 homolog n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9A92E)

HSP 1 Score: 49.7 bits (117), Expect = 1.950e-5
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   22 QIRRWGMAACVRNCCFEEADHPWLLH-EVRVLPHLLMRLS-----DDAD 150
            +IR+ G+   ++NCCF++  H WLL  EV +LPHLL+ L+     DD D
Sbjct:  214 EIRKSGVVTLIKNCCFDQEHHEWLLSPEVEILPHLLLPLAGPEQFDDED 262          
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Match: A0A1R1PRE4_ZANCU (Protein HGH1-like protein n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PRE4_ZANCU)

HSP 1 Score: 48.9 bits (115), Expect = 3.360e-5
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   25 IRRWGMAACVRNCCFEEADHPWLLHEVRVLPHLLMRL--SDDADEYDFD 165
            IRR G+A+ ++N CF+   H  LLHE+ +LP++L+ L  +D+ DE D D
Sbjct:  100 IRRGGVASSIKNVCFDLEAHERLLHELNILPYILLPLCGNDEYDENDMD 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32164.8659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G1I7_ECTSI1.860e-2477.78Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
H2XL93_CIOIN2.400e-756.25Protein HGH1 homolog n=2 Tax=Ciona intestinalis Ta... [more]
A0A7S2RP18_9STRA7.690e-747.62Protein HGH1 homolog n=1 Tax=Rhizochromulina marin... [more]
A0A6P8HXK7_ACTTE4.040e-649.02Protein HGH1 homolog n=1 Tax=Actinia tenebrosa Tax... [more]
UPI000C2537787.610e-652.94protein HGH1 homolog n=1 Tax=Leptinotarsa decemlin... [more]
K1QN54_CRAGI1.050e-544.90Protein HGH1 homolog n=2 Tax=Crassostrea gigas Tax... [more]
UPI0006258FA91.420e-551.28protein HGH1 homolog isoform X1 n=2 Tax=Orussus ab... [more]
UPI00145533FC1.950e-556.41protein HGH1 homolog n=1 Tax=Asterias rubens TaxID... [more]
UPI0008F9A92E1.950e-544.90protein HGH1 homolog n=1 Tax=Bemisia tabaci TaxID=... [more]
A0A1R1PRE4_ZANCU3.360e-544.90Protein HGH1-like protein n=1 Tax=Zancudomyces cul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32164contigH-paniculata_contig32164:2396..2569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7G1I7
Preferred nameHGH1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Domain of unknown function (DUF383)
EggNOG OGsKOG2973@1,KOG2973@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-07_001180.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.4516997-CDS-H-paniculata_contig32164:2395..25691622929992.4516997-CDS-H-paniculata_contig32164:2395..2569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32164 2396..2569 -
1691481101.6048472-CDS-H-paniculata_contig32164:2395..25691691481101.6048472-CDS-H-paniculata_contig32164:2395..2569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32164 2396..2569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32164.8659.1prot_H-paniculata_contig32164.8659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32164 2396..2569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32164.8659.1

>prot_H-paniculata_contig32164.8659.1 ID=prot_H-paniculata_contig32164.8659.1|Name=mRNA_H-paniculata_contig32164.8659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
PPPPSYRQIRRWGMAACVRNCCFEEADHPWLLHEVRVLPHLLMRLSDDAD
EYDFDEKV
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mRNA from alignment at H-paniculata_contig32164:2396..2569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32164.8659.1 ID=mRNA_H-paniculata_contig32164.8659.1|Name=mRNA_H-paniculata_contig32164.8659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig32164:2396..2569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCCCCCCTCCTACCGACAGATCCGACGATGGGGGATGGCTGCGTG TGTGCGCAATTGCTGCTTCGAGGAGGCCGACCACCCGTGGCTCTTGCATG AAGTTCGAGTGTTACCGCACCTTTTGATGCGGCTCTCGGACGATGCAGAT GAATATGACTTCGACGAGAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig32164:2396..2569-

>mRNA_H-paniculata_contig32164.8659.1 ID=mRNA_H-paniculata_contig32164.8659.1|Name=mRNA_H-paniculata_contig32164.8659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig32164:2396..2569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCCCCCCTCCTACCGACAGATCCGACGATGGGGGATGGCTGCGTG
TGTGCGCAATTGCTGCTTCGAGGAGGCCGACCACCCGTGGCTCTTGCATG
AAGTTCGAGTGTTACCGCACCTTTTGATGCGGCTCTCGGACGATGCAGAT
GAATATGACTTCGACGAGAAGGTGCCCCCCCCCCCCTCCTACCGACAGAT
CCGACGATGGGGGATGGCTGCGTGTGTGCGCAATTGCTGCTTCGAGGAGG
CCGACCACCCGTGGCTCTTGCATGAAGTTCGAGTGTTACCGCACCTTTTG
ATGCGGCTCTCGGACGATGCAGATGAATATGACTTCGACGAGAAGGTG
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