mRNA_H-paniculata_contig32126.8650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32126.8650.1
Unique NamemRNA_H-paniculata_contig32126.8650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32126.8650.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.770e-7
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:   60 QKPRRSHVGDHCTQRRVVGKFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENV 257
            +K RRS  G     R V  +  L    K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+V
Sbjct:   31 KKCRRSKYG-----RGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESV 91
[Close]
BLAST of mRNA_H-paniculata_contig32126.8650.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.850e-7
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:   60 QKPRRSHVGDHCTQRRVVGKFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENV 257
            +K RRS  G     R V  +  L    K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+V
Sbjct:  229 KKCRRSKYG-----RGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESV 289
[Close]
BLAST of mRNA_H-paniculata_contig32126.8650.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.810e-6
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:   60 QKPRRSHVGDHCTQRRVVGKFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENV 257
            +K RRS  G     R V  +  L    K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+V
Sbjct:  278 KKCRRSKYG-----RGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESV 338
[Close]
BLAST of mRNA_H-paniculata_contig32126.8650.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.380e-6
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 3 
Query:   60 QKPRRSHVGDHCTQRRVVGKFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKEN 254
            +K RRS  G     R V  +  L    K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+
Sbjct:  126 KKCRRSKYG-----RGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEES 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32126.8650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4U0_9PHAE6.770e-746.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE6.850e-746.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE1.810e-646.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3A9_9PHAE3.380e-646.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32126contigH-paniculata_contig32126:2118..2374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size257
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.164735-UTR-H-paniculata_contig32126:2117..21491622929991.164735-UTR-H-paniculata_contig32126:2117..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32126 2118..2149 +
1691481101.01492-UTR-H-paniculata_contig32126:2117..21491691481101.01492-UTR-H-paniculata_contig32126:2117..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32126 2118..2149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.1849535-CDS-H-paniculata_contig32126:2149..23741622929991.1849535-CDS-H-paniculata_contig32126:2149..2374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32126 2150..2374 +
1691481101.0250127-CDS-H-paniculata_contig32126:2149..23741691481101.0250127-CDS-H-paniculata_contig32126:2149..2374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32126 2150..2374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32126.8650.1prot_H-paniculata_contig32126.8650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32126 2150..2374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32126.8650.1

>prot_H-paniculata_contig32126.8650.1 ID=prot_H-paniculata_contig32126.8650.1|Name=mRNA_H-paniculata_contig32126.8650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MGFPYTSIPQKPRRSHVGDHCTQRRVVGKFRLDSNGKRVPDTDIESASAA
CYTFPSLLASGKVPAAAWDAVKENV
back to top

mRNA from alignment at H-paniculata_contig32126:2118..2374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32126.8650.1 ID=mRNA_H-paniculata_contig32126.8650.1|Name=mRNA_H-paniculata_contig32126.8650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=257bp|location=Sequence derived from alignment at H-paniculata_contig32126:2118..2374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGAGCCTAGAGTTGGGCGGAGAGGAGGGGGATGGGGTTTCCGTACACT
TCTATACCCCAAAAGCCAAGAAGGTCCCACGTAGGCGATCACTGTACGCA
GAGGCGCGTGGTCGGCAAATTTAGGCTAGACAGCAACGGTAAGAGAGTCC
CTGACACGGACATAGAGTCAGCGAGTGCGGCCTGCTATACTTTCCCCTCC
TTGTTGGCGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAGA
AAACGTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig32126:2118..2374+

>mRNA_H-paniculata_contig32126.8650.1 ID=mRNA_H-paniculata_contig32126.8650.1|Name=mRNA_H-paniculata_contig32126.8650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig32126:2118..2374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTTTCCGTACACTTCTATACCCCAAAAGCCAAGAAGGTCCCACGT
AGGCGATCACTGTACGCAGAGGCGCGTGGTCGGCAAATTTAGGCTAGACA
GCAACGGTAAGAGAGTCCCTGACACGGACATAGAGTCAGCGAGTGCGGCC
TGCTATACTTTCCCCTCCTTGTTGGCGAGCGGTAAAGTGCCGGCAGCAGC
ATGGGACGCTGTTAAAGAAAACGTTATGGGGTTTCCGTACACTTCTATAC
CCCAAAAGCCAAGAAGGTCCCACGTAGGCGATCACTGTACGCAGAGGCGC
GTGGTCGGCAAATTTAGGCTAGACAGCAACGGTAAGAGAGTCCCTGACAC
GGACATAGAGTCAGCGAGTGCGGCCTGCTATACTTTCCCCTCCTTGTTGG
CGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAGAAAACGTT
back to top