prot_H-paniculata_contig32121.8648.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig32121.8648.1
Unique Nameprot_H-paniculata_contig32121.8648.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length134
Homology
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.710e-30
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = 0
Query:    3 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 133
            V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+L+RFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct:  135 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 265          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.890e-29
Identity = 60/131 (45.80%), Postives = 90/131 (68.70%), Query Frame = 0
Query:    3 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 133
            V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+L+RFG+S + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct: 1364 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 1494          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.690e-29
Identity = 60/131 (45.80%), Postives = 89/131 (67.94%), Query Frame = 0
Query:    3 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 133
            V+ +L  +F +TDLGE SL+L ME+ R+R+  TL +SQ  Y  S+L+RFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct:  695 VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 825          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.300e-28
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 204          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.900e-28
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   16 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 146          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.140e-27
Identity = 57/131 (43.51%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    3 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 133
            ++ +L  +F +TD+GEV L+LGME+ R+R +GTL +SQ  Y  S+L+RFGMS   PT TPG  ++ +    + TLL    T+ YQ +VG LI++ Q  R+DI ++  Q  R M+ P++ H+VA K  LRY+
Sbjct:  672 IKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYV 802          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.210e-27
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  149 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 279          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.860e-27
Identity = 55/131 (41.98%), Postives = 85/131 (64.89%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG+ V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 204          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.310e-26
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  401 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 531          
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.370e-26
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    4 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 134
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  557 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 687          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.710e-3046.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.890e-2945.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE9.690e-2945.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAK0_9PHAE1.300e-2841.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE9.900e-2841.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.140e-2743.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGS8_9PHAE1.210e-2741.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE1.860e-2741.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.310e-2641.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.370e-2641.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..62
e-value: 1.5E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 2..134
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32121contigH-paniculata_contig32121:1425..1826 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32121.8648.1mRNA_H-paniculata_contig32121.8648.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig32121 1419..1826 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig32121.8648.1 ID=prot_H-paniculata_contig32121.8648.1|Name=mRNA_H-paniculata_contig32121.8648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDR
FGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCT
RFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like