mRNA_H-paniculata_contig32121.8648.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32121.8648.1
Unique NamemRNA_H-paniculata_contig32121.8648.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.570e-30
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:   13 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 405
            V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+L+RFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct:  135 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 265
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.800e-29
Identity = 60/131 (45.80%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:   13 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 405
            V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+L+RFG+S + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct: 1364 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 1494
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.940e-28
Identity = 60/131 (45.80%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:   13 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 405
            V+ +L  +F +TDLGE SL+L ME+ R+R+  TL +SQ  Y  S+L+RFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+VA K  LRYL
Sbjct:  695 VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYL 825
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.770e-28
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 204
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.090e-27
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   16 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 146
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.280e-27
Identity = 57/131 (43.51%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   13 VRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYL 405
            ++ +L  +F +TD+GEV L+LGME+ R+R +GTL +SQ  Y  S+L+RFGMS   PT TPG  ++ +    + TLL    T+ YQ +VG LI++ Q  R+DI ++  Q  R M+ P++ H+VA K  LRY+
Sbjct:  672 IKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYV 802
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.550e-27
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  149 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 279
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.910e-27
Identity = 55/131 (41.98%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG+ V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 204
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.620e-26
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  401 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 531
[Close]
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.740e-26
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   16 RNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDRFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK 408
            + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++L+RFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++  S P Q ++ A K +LRYL+
Sbjct:  557 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR 687
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32121.8648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE3.570e-3046.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE5.800e-2945.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.940e-2845.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAK0_9PHAE2.770e-2841.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE2.090e-2741.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE2.280e-2743.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGS8_9PHAE2.550e-2741.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE3.910e-2741.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.620e-2641.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE2.740e-2641.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32121contigH-paniculata_contig32121:1419..1826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog164328.Phyra85923
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.0249426-UTR-H-paniculata_contig32121:1418..14241622929991.0249426-UTR-H-paniculata_contig32121:1418..1424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32121 1419..1424 +
1691481100.932658-UTR-H-paniculata_contig32121:1418..14241691481100.932658-UTR-H-paniculata_contig32121:1418..1424Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32121 1419..1424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.0425708-CDS-H-paniculata_contig32121:1424..18261622929991.0425708-CDS-H-paniculata_contig32121:1424..1826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32121 1425..1826 +
1691481100.949937-CDS-H-paniculata_contig32121:1424..18261691481100.949937-CDS-H-paniculata_contig32121:1424..1826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32121 1425..1826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32121.8648.1prot_H-paniculata_contig32121.8648.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32121 1425..1826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32121.8648.1

>prot_H-paniculata_contig32121.8648.1 ID=prot_H-paniculata_contig32121.8648.1|Name=mRNA_H-paniculata_contig32121.8648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLDR
FGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCT
RFDICFSVTQAARFMSAPTQQHLVAVKRILRYLK
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mRNA from alignment at H-paniculata_contig32121:1419..1826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32121.8648.1 ID=mRNA_H-paniculata_contig32121.8648.1|Name=mRNA_H-paniculata_contig32121.8648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig32121:1419..1826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGATGGACGTCCGTAACCAACTGATGAACAAATTCACTATCACGGA
CCTGGGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTAACAGAC
AAGAGGGTACTCTACAGCTGTCACAGTATAAGTACGTACTCTCTGTTTTA
GACAGGTTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGGCGTGAA
AACGGACCCTACTACTACTGGCGAGGACAGCACTCTACTGGATACAGCAG
CTACAAAAGAGTACCAGGCCATGGTCGGGAGCCTTATCTTCTTGACTCAG
TGTACGAGATTCGACATATGCTTCAGCGTTACTCAAGCAGCACGATTCAT
GAGTGCACCAACTCAACAGCACCTAGTGGCAGTGAAGCGCATTCTTCGAT
ACTTAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32121:1419..1826+

>mRNA_H-paniculata_contig32121.8648.1 ID=mRNA_H-paniculata_contig32121.8648.1|Name=mRNA_H-paniculata_contig32121.8648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig32121:1419..1826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTCCGTAACCAACTGATGAACAAATTCACTATCACGGACCTGGG
AGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTAACAGACAAGAGG
GTACTCTACAGCTGTCACAGTATAAGTACGTACTCTCTGTTTTAGACAGG
TTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGGCGTGAAAACGGA
CCCTACTACTACTGGCGAGGACAGCACTCTACTGGATACAGCAGCTACAA
AAGAGTACCAGGCCATGGTCGGGAGCCTTATCTTCTTGACTCAGTGTACG
AGATTCGACATATGCTTCAGCGTTACTCAAGCAGCACGATTCATGAGTGC
ACCAACTCAACAGCACCTAGTGGCAGTGAAGCGCATTCTTCGATACTTAA
AAATGGACGTCCGTAACCAACTGATGAACAAATTCACTATCACGGACCTG
GGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTAACAGACAAGA
GGGTACTCTACAGCTGTCACAGTATAAGTACGTACTCTCTGTTTTAGACA
GGTTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGGCGTGAAAACG
GACCCTACTACTACTGGCGAGGACAGCACTCTACTGGATACAGCAGCTAC
AAAAGAGTACCAGGCCATGGTCGGGAGCCTTATCTTCTTGACTCAGTGTA
CGAGATTCGACATATGCTTCAGCGTTACTCAAGCAGCACGATTCATGAGT
GCACCAACTCAACAGCACCTAGTGGCAGTGAAGCGCATTCTTCGATACTT
AAAA
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