mRNA_H-paniculata_contig32055.8631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32055.8631.1
Unique NamemRNA_H-paniculata_contig32055.8631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5L2Q6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-22
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   43 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 111
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5JH18_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH18_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.250e-22
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKTI------ISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK +      ISEGQ GFR+ RGCVDHV T+GR F  RKR G
Sbjct:   43 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKELLEKERSISEGQAGFRQKRGCVDHVFTVGRIFQGRKRAG 116
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5K2Y2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.990e-22
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   43 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 111
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5KRU0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.570e-22
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+G+    RKR G
Sbjct:   11 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGKIIQGRKRAG 79
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5KBB6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-21
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R +TLLNT GKVFCKL NDRI GVLE    ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   44 KTDPGNYRGVTLLNTVGKVFCKLLNDRIVGVLENEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 112
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5JDV1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.820e-21
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   11 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 79
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.840e-21
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GNDR ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:  163 KTDPGNDRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 231
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5JU03_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU03_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.930e-21
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            ET  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   51 ETDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 119
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5KTM7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.260e-21
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +TG GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR    RKR G
Sbjct:   96 KTGPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAG 164
[Close]
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Match: A0A6H5KW35_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW35_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.020e-21
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   52 ETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLEKT-IISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG 255
            +T  GN R ITLLNT GKVFCKL NDRI GVLEK   ISEGQ GFR+ RGCVDHV T+GR   DRKR G
Sbjct:   43 KTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQDRKRAG 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32055.8631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2Q6_9PHAE1.100e-2269.57Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JH18_9PHAE1.250e-2266.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2Y2_9PHAE3.990e-2269.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KRU0_9PHAE7.570e-2268.12Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBB6_9PHAE1.530e-2166.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JDV1_9PHAE1.820e-2169.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4L1_9PHAE1.840e-2171.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JU03_9PHAE1.930e-2171.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTM7_9PHAE2.260e-2171.01Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KW35_9PHAE3.020e-2171.01Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32055contigH-paniculata_contig32055:2411..2668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D7G873
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.288594-CDS-H-paniculata_contig32055:2410..26681622929988.288594-CDS-H-paniculata_contig32055:2410..2668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32055 2411..2668 +
1691481099.559165-CDS-H-paniculata_contig32055:2410..26681691481099.559165-CDS-H-paniculata_contig32055:2410..2668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32055 2411..2668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32055.8631.1prot_H-paniculata_contig32055.8631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32055 2411..2668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32055.8631.1

>prot_H-paniculata_contig32055.8631.1 ID=prot_H-paniculata_contig32055.8631.1|Name=mRNA_H-paniculata_contig32055.8631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MRFSVRYDYCSNCPRYVETGQGNDRAITLLNTEGKVFCKLPNDRIGGVLE
KTIISEGQGGFRRNRGCVDHVHTLGRFFLDRKRRG*
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mRNA from alignment at H-paniculata_contig32055:2411..2668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32055.8631.1 ID=mRNA_H-paniculata_contig32055.8631.1|Name=mRNA_H-paniculata_contig32055.8631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig32055:2411..2668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTTCTCCGTCAGATATGACTACTGTTCAAACTGTCCCAGATATGT
TGAAACAGGCCAAGGTAACGACAGAGCTATCACGCTTCTGAACACAGAAG
GAAAGGTGTTTTGTAAACTCCCGAATGACAGAATAGGTGGAGTACTGGAA
AAGACTATAATCAGTGAGGGTCAAGGAGGATTCCGACGCAACAGGGGTTG
CGTAGACCACGTGCACACATTAGGGAGATTTTTCCTGGATAGGAAGAGGC
GCGGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32055:2411..2668+

>mRNA_H-paniculata_contig32055.8631.1 ID=mRNA_H-paniculata_contig32055.8631.1|Name=mRNA_H-paniculata_contig32055.8631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig32055:2411..2668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTTCTCCGTCAGATATGACTACTGTTCAAACTGTCCCAGATATGT
TGAAACAGGCCAAGGTAACGACAGAGCTATCACGCTTCTGAACACAGAAG
GAAAGGTGTTTTGTAAACTCCCGAATGACAGAATAGGTGGAGTACTGGAA
AAGACTATAATCAGTGAGGGTCAAGGAGGATTCCGACGCAACAGGGGTTG
CGTAGACCACGTGCACACATTAGGGAGATTTTTCCTGGATAGGAAGAGGC
GCGGCTGAATGCGTTTCTCCGTCAGATATGACTACTGTTCAAACTGTCCC
AGATATGTTGAAACAGGCCAAGGTAACGACAGAGCTATCACGCTTCTGAA
CACAGAAGGAAAGGTGTTTTGTAAACTCCCGAATGACAGAATAGGTGGAG
TACTGGAAAAGACTATAATCAGTGAGGGTCAAGGAGGATTCCGACGCAAC
AGGGGTTGCGTAGACCACGTGCACACATTAGGGAGATTTTTCCTGGATAG
GAAGAGGCGCGGCTGA
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