mRNA_H-paniculata_contig32053.8629.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32053.8629.1
Unique NamemRNA_H-paniculata_contig32053.8629.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.760e-34
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEA+ W F+AL    FGLP DRLYATYFGGDE+LGL PDLE RD+WLKVLPE+RV+PGDRKDNFWE+
Sbjct:  253 SFGDYFKEEAVEWGFEALNE-VFGLPADRLYATYFGGDEELGLAPDLETRDLWLKVLPEDRVMPGDRKDNFWEM 325          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A7S3TBJ3_9SPIT (Alanine--tRNA ligase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TBJ3_9SPIT)

HSP 1 Score: 119 bits (298), Expect = 1.250e-32
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEAI WA++ LT   +G+PGDRLYATYF GDE LGLPPD EAR  WLK LPE RVLPG  KDNFWE+
Sbjct:   91 SFGDYFKEEAIDWAWELLTK-VYGVPGDRLYATYFEGDESLGLPPDEEARQFWLKYLPEGRVLPGSSKDNFWEM 163          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A1S4DWP3_CUCME (Alanine--tRNA ligase n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4DWP3_CUCME)

HSP 1 Score: 111 bits (277), Expect = 7.750e-30
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFK+EAI WA++ LT   + LP DR+YATYFGGDEK GL PD EARD+WLK LP ERVLP   KDNFWE+
Sbjct:   60 SFGDYFKKEAITWAWELLTQ-VYKLPTDRIYATYFGGDEKAGLAPDNEARDIWLKFLPAERVLPFGCKDNFWEM 132          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A7S0SRE6_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRE6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.300e-29
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEAI WA+D L    + LP DRLYA+YFGGDE LG+P DLEARD WLK LP ERVLP D+K NFWE+
Sbjct:  127 SFGDYFKEEAIDWAYDILVN-VYKLPPDRLYASYFGGDESLGIPADLEARDYWLKYLPNERVLPFDKKANFWEM 199          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A7S0LGZ1_9EUKA (Alanine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGZ1_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 1.550e-29
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFK EA+ WA++  T   +GLP DR YATYF GDEKLGL PD EAR +WL+ LP ERVLPG+ KDNFWE+
Sbjct:   60 SFGDYFKTEAVDWAWELFTQ-VYGLPEDRFYATYFEGDEKLGLAPDEEARQLWLRYLPPERVLPGNAKDNFWEM 132          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A812IYE8_SYMPI (Alanine--tRNA ligase (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IYE8_SYMPI)

HSP 1 Score: 114 bits (285), Expect = 2.320e-29
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEAI WA++ LT   +GL  +RLYA+YF GDE+LGLPPDLEA++MW K LP ERVLP DRKDNFWE+
Sbjct:   20 SFGDYFKEEAIDWAWELLTE-VYGLDPNRLYASYFSGDEELGLPPDLEAKEMWEKRLPPERVLPFDRKDNFWEM 92          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A6A2X108_HIBSY (Alanine--tRNA ligase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X108_HIBSY)

HSP 1 Score: 117 bits (292), Expect = 5.330e-29
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEAI WA++ LT   +GLP DR+YATYFGGDEK+GLPPD EARD+WLK LP  RVLP   KDNFWE+
Sbjct:  162 SFGDYFKEEAIEWAWELLTK-VYGLPTDRIYATYFGGDEKVGLPPDNEARDLWLKFLPPGRVLPFGCKDNFWEM 234          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A3B1DZ45_9ZZZZ (Alanine--tRNA ligase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DZ45_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 5.390e-29
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFK EAI WA+D LT   +GLPG+++YATYF GDEK GL PD EARD+WL+ LP ERVLPG+ KDNFWE+
Sbjct:  105 SFGDYFKAEAIEWAWDLLTR-VYGLPGEQMYATYFEGDEKAGLEPDHEARDLWLRYLPPERVLPGNMKDNFWEM 177          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A7R9YH73_DIALT (Alanine--tRNA ligase (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YH73_DIALT)

HSP 1 Score: 108 bits (271), Expect = 5.650e-29
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFK EA+ WAF+ LT   FGL  +RLYATYF GD   GL PDLEARD+W K+LPE  VLPG+ KDNFWE+
Sbjct:   20 SFGDYFKTEAVEWAFELLTS-EFGLDKNRLYATYFEGDAAQGLEPDLEARDLWRKLLPESHVLPGNAKDNFWEM 92          
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Match: A0A835ZLN6_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.770e-29
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEARDMWLKVLPEERVLPGDRKDNFWEV 222
            SFGDYFKEEAI WA+D LT   + LP DRLYATYFGGDE +GLP D EARD WLKVLP +R+LP DRK NFWE+
Sbjct:  129 SFGDYFKEEAIEWAWDILTR-VYALPPDRLYATYFGGDEAMGLPADNEARDFWLKVLPADRILPFDRKANFWEM 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32053.8629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV6_ECTSI5.760e-3478.38Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3TBJ3_9SPIT1.250e-3274.32Alanine--tRNA ligase (Fragment) n=1 Tax=Strombidin... [more]
A0A1S4DWP3_CUCME7.750e-3070.27Alanine--tRNA ligase n=1 Tax=Cucumis melo TaxID=36... [more]
A0A7S0SRE6_9STRA1.300e-2971.62Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina... [more]
A0A7S0LGZ1_9EUKA1.550e-2967.57Alanine--tRNA ligase (Fragment) n=1 Tax=Coccolithu... [more]
A0A812IYE8_SYMPI2.320e-2971.62Alanine--tRNA ligase (Fragment) n=1 Tax=Symbiodini... [more]
A0A6A2X108_HIBSY5.330e-2972.97Alanine--tRNA ligase n=1 Tax=Hibiscus syriacus Tax... [more]
A0A3B1DZ45_9ZZZZ5.390e-2970.27Alanine--tRNA ligase (Fragment) n=1 Tax=hydrotherm... [more]
A0A7R9YH73_DIALT5.650e-2967.57Alanine--tRNA ligase (Fragment) n=1 Tax=Diacronema... [more]
A0A835ZLN6_9STRA7.770e-2972.97Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32053contigH-paniculata_contig32053:980..1201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D8LCV6
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.1763217-CDS-H-paniculata_contig32053:979..12011622929988.1763217-CDS-H-paniculata_contig32053:979..1201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32053 980..1201 -
1691481099.5321314-CDS-H-paniculata_contig32053:979..12011691481099.5321314-CDS-H-paniculata_contig32053:979..1201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32053 980..1201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32053.8629.1prot_H-paniculata_contig32053.8629.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32053 980..1201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32053.8629.1

>prot_H-paniculata_contig32053.8629.1 ID=prot_H-paniculata_contig32053.8629.1|Name=mRNA_H-paniculata_contig32053.8629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
SFGDYFKEEAIAWAFDALTGGAFGLPGDRLYATYFGGDEKLGLPPDLEAR
DMWLKVLPEERVLPGDRKDNFWEV
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mRNA from alignment at H-paniculata_contig32053:980..1201-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32053.8629.1 ID=mRNA_H-paniculata_contig32053.8629.1|Name=mRNA_H-paniculata_contig32053.8629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig32053:980..1201- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGGAGACTATTTCAAAGAAGAGGCGATCGCGTGGGCCTTCGACGC CCTCACGGGCGGAGCTTTTGGGCTGCCCGGCGACCGCCTGTACGCCACGT ACTTCGGCGGCGACGAGAAGCTGGGCCTACCGCCGGACCTGGAGGCGCGG GATATGTGGCTAAAAGTTCTTCCGGAGGAGAGGGTGCTGCCCGGTGATCG CAAGGACAATTTTTGGGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig32053:980..1201-

>mRNA_H-paniculata_contig32053.8629.1 ID=mRNA_H-paniculata_contig32053.8629.1|Name=mRNA_H-paniculata_contig32053.8629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig32053:980..1201- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGGAGACTATTTCAAAGAAGAGGCGATCGCGTGGGCCTTCGACGC
CCTCACGGGCGGAGCTTTTGGGCTGCCCGGCGACCGCCTGTACGCCACGT
ACTTCGGCGGCGACGAGAAGCTGGGCCTACCGCCGGACCTGGAGGCGCGG
GATATGTGGCTAAAAGTTCTTCCGGAGGAGAGGGTGCTGCCCGGTGATCG
CAAGGACAATTTTTGGGAGGTAAGCTTCGGAGACTATTTCAAAGAAGAGG
CGATCGCGTGGGCCTTCGACGCCCTCACGGGCGGAGCTTTTGGGCTGCCC
GGCGACCGCCTGTACGCCACGTACTTCGGCGGCGACGAGAAGCTGGGCCT
ACCGCCGGACCTGGAGGCGCGGGATATGTGGCTAAAAGTTCTTCCGGAGG
AGAGGGTGCTGCCCGGTGATCGCAAGGACAATTTTTGGGAGGTA
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