mRNA_H-paniculata_contig32051.8628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32051.8628.1
Unique NamemRNA_H-paniculata_contig32051.8628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32051.8628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32051contigH-paniculata_contig32051:19..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.1055164-CDS-H-paniculata_contig32051:18..681622929988.1055164-CDS-H-paniculata_contig32051:18..68Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32051 19..68 +
1691481099.5054162-CDS-H-paniculata_contig32051:18..681691481099.5054162-CDS-H-paniculata_contig32051:18..68Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32051 19..68 +
1622929988.1170824-CDS-H-paniculata_contig32051:400..5391622929988.1170824-CDS-H-paniculata_contig32051:400..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32051 401..539 +
1691481099.515088-CDS-H-paniculata_contig32051:400..5391691481099.515088-CDS-H-paniculata_contig32051:400..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32051 401..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32051.8628.1prot_H-paniculata_contig32051.8628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32051 19..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32051.8628.1

>prot_H-paniculata_contig32051.8628.1 ID=prot_H-paniculata_contig32051.8628.1|Name=mRNA_H-paniculata_contig32051.8628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
LALAGASNSSALVNACRIENIVIHDGVPLAAGSAAMTDGSLSTKCAAKLV
VVSIAGDKTLLNP
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mRNA from alignment at H-paniculata_contig32051:19..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32051.8628.1 ID=mRNA_H-paniculata_contig32051.8628.1|Name=mRNA_H-paniculata_contig32051.8628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at H-paniculata_contig32051:19..541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAG
GTACAGTTTGGGGACGAATTAATGTCGTTGTGTTGCTTTCTATGGATGGT
AGACTTTGTCGTCATCGTCAGGTAGGTAGTCAGTCTGCCTCTGTTGCTTT
CATTTTTTACTTGTTAATCTTCCTCATATCAACTTGCATTACACCTGGCG
TCAAAGTACAGGAGCTCCGTTACATGTAGACTACATGAGACTGCTTCACG
TCTTCGACATGAATCACTGCATATTTAGTCACAACAGTGTGTCCTCCATG
GATTTCGCTTCGCGAGAATGATGATTGGCGTGCACGATCCCTAAACATCT
ACTACGTACCCCTATTCGTCGCCGCTACGAAGGATCGAGAACATTGTTAT
CCATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGA
GTCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTGTCTCCATTGCAGGA
GACAAGACCCTCCTCAACCCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig32051:19..541+

>mRNA_H-paniculata_contig32051.8628.1 ID=mRNA_H-paniculata_contig32051.8628.1|Name=mRNA_H-paniculata_contig32051.8628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig32051:19..541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAG
CTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAG
GATCGAGAACATTGTTATCCATGATGGGGTGCCTCTTGCAGCTGGGTCGG
CGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGCCAAATTGGTG
GTTGTCTCCATTGCAGGAGACAAGACCCTCCTCAACCCTGATCGAGAACA
TTGTTATCCATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACA
GATGGGAGTCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTGTCTCCAT
TGCAGGAGACAAGACCCTCCTCAACCCT
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