mRNA_H-paniculata_contig3205.8627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3205.8627.1 vs. uniprot
Match: D8LJF0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI) HSP 1 Score: 670 bits (1728), Expect = 2.640e-225 Identity = 436/792 (55.05%), Postives = 504/792 (63.64%), Query Frame = 1
Query: 1 VVHGESFVVSVGPNDSIQWLQERVSDMFSLEHNFSTHVVQVVEVYSRDIFQAVAEGVGVG-EGNDV-FRPLLPTSPVNKILSFKDRSIVHPAPMEEDTSEGVPDAKVWARVQATVTVPPGPLGVVLDGEVGDRPVVLEVQGVSS*TTTFTPAETALSAP-------GVAAAPSSGSGPYPK--PAAAGPKLTRRERARRLLVGLAIKHHPNLNQGGNIDNINGPSAFNQTLRSPTGGGGAGFDVGNRAVAVKRGGVTQANNSSPLVTATDSATVRPGMVLASVAALQGQGVSEKAVDTLGMGVKEAIETLVRYQHLHRAITFVDPQPGASADKGV-VGGTAGSAGVTCPFSVSVTVSEAKGLKRSDLFTADPFAWVRLGGSSHKTAVCRSTRQDRPQWGETFKFMVLSLERSLMVQIWDADELGADVQLGETAVDLSGLPVNNPFQ-PDSS---VVDEWHSLQV--GGSYCQILFPSGAVRLKIRIDQQLYVSVHKKKVDSAARLLQSAMRSFVLRRQKLS--EGPPRSTSGGNPANNKNSNSSRPSSGSDRAQAVFAAVD------AXXXXXXXXXXXXXXXXXXXLGWASSSRKSVAGAVGGGWEASGAHAASTLVDVFPAE-DDDERGVVARSGSQERSGGFGVGSKGVSILVMKFLEGPALERFGGGSRGNTSFRP-------------KSSVGTFVGSRSTGSFAATNSTERKSSGATSVRFVDGGRRSTVGGWGENDEAARPGTSVCKDCLSDVASLLAVAMAPARATVTVMEDA-----THLRYP 2241
V+HGESF+V+ GPNDS++WLQ+ S +FS EHNF THVVQVVE Y RDIFQA A+ +G G EG D PL P S V K +S KDR++ HPAPME+ SE V DAK+WARVQATVTVPPGPLGVVLDGEVGDRPVVLE+ G S F + + P G A P+ G+ P P PK+TR++RA+RLL+ LA KHH + N P G++A + +A SPLVTATD+ATVRPGMVLA+VAA GQGVSE+AVDTLGMGVKEAIETLVRYQHLHRAITF+DP G S++K + + G A AGVTCP+SV VTV EA+GLKRSD+FTADPFAW+RLGGSSHKT+VCRST RP WGETFKF +LSLERSL+VQ+WDADELGADV LGET+V+LS LPVNNPFQ PD++ V D W++LQV GG+ S VRLKI IDQQL+V++HKKKVDSAARLLQ AMRSFV RRQ L+ + R +GG P A G SSRKSVAGAVGGGWEASGAHAASTL DVFP E +D ++GVS +V KFLEGPALERF G G KSSVGT G RST ++ R+SS A SVRFVDGGRRSTVGGWGE DEAARPG SVCKDCLSDV SLLAVAMAPA A T ME A ++R+P
Sbjct: 178 VIHGESFIVTAGPNDSVRWLQQEASALFSKEHNFRTHVVQVVETYPRDIFQANADALGGGDEGGDASLHPLNPESLVRKAISTKDRTLFHPAPMEDGVSE-VADAKIWARVQATVTVPPGPLGVVLDGEVGDRPVVLEIPGQSGPAQVFQTVDGSRDNPAGSTMPEGFATTPT-GTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHTNAXXXXXXXXXPVEIXXXXXXXX----XXXSPGSKASSPXXXXGHEAL-PSPLVTATDAATVRPGMVLAAVAARGGQGVSEEAVDTLGMGVKEAIETLVRYQHLHRAITFIDPPSGWSSEKDLDMAGGAVGAGVTCPYSVGVTVVEARGLKRSDIFTADPFAWLRLGGSSHKTSVCRST--SRPHWGETFKFALLSLERSLVVQVWDADELGADVLLGETSVNLSKLPVNNPFQLPDAAGGAVADVWYNLQVEGGGNEAGSSVGSRGVRLKISIDQQLHVAIHKKKVDSAARLLQGAMRSFVFRRQTLTNRQKQGRDGTGGAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADSEDAAGRGVRGGGGMGYGGGRQQSSRKSVAGAVGGGWEASGAHAASTLADVFPDEVEDTGXXXXXXXXXXXXXXXXDPATRGVSAIVTKFLEGPALERFASGGVGXXXXXXXXXXXXXXXXILRKSSVGTLGGRRST------LASGRRSSAA-SVRFVDGGRRSTVGGWGEGDEAARPGASVCKDCLSDVGSLLAVAMAPAEAARTTMEFARLGIAAYIRHP 953
BLAST of mRNA_H-paniculata_contig3205.8627.1 vs. uniprot
Match: A0A6H5KM70_9PHAE (C2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE) HSP 1 Score: 607 bits (1566), Expect = 1.780e-200 Identity = 413/784 (52.68%), Postives = 476/784 (60.71%), Query Frame = 1
Query: 1 VVHGESFVVSVGPNDSIQWLQERVSDMFSLEHNFSTHVVQVVEVYSRDIFQAVAEGVGVG-EGNDV-FRPLLPTSPVNKILSFKDRSIVHPAPMEEDTSEGVPDAKVWARVQATV---------TVPPGPLGVVLDGEVGDRPVVLEVQGVSS*TTTFTP-------AETALSAPGVAAAPSSGSGPYPK--PAAAGPKLTRRERARRLLVGLAIKHHPNLNQGGNIDNIN-GPSAFNQTLRSPTGGGGAGFDV-----GNRAVAVKRGGVTQANNSSPLVTATDSATVRPGMVLASVAALQGQGVSEKAVDTLGMGVKEAIETLVRYQHLHRAITFVDPQPGASADKGV-VGGTAGSAGVTCPFSVSVTVSEAKGLKRSDLFTADPFAWVRLGGSSHKTAVCRSTRQDRPQWGETFKFMVLSLERSLMVQIWDADELGADVQLGETAVDLSGLPVNNPFQ-PDSS---VVDEWHSLQV--GGSYCQILFPSGAVRLKIRIDQQLYVSVHKKKVDSAARLLQSAMRSFVLRRQKLSEGPPRSTSGGN-PANNKNSNSSRPSSGSDRAQAVFAAVDAXXXXXXXXXXXXXXXXXXXLGWA------SSSRKSVAGAVGGGWEASGAHAASTLVDVFPAEDDDERGVVARSGSQERSGGFG-VGSKGVSILVMKFLEGPALERFGGGSRGNTSFRPKSSVGTFVGSRSTGSFAATNSTERKSSGATS----VRFVDGGRRSTVGGWGENDEAARPGTSVCKDCLSDVASLLAVAMAPARATVTVME 2217
V+HGESF+V+ GPNDS++WLQ+ S +FS EHNF THVVQVVE Y RDIFQA A+ +G G EG D PL P S V K +S KDR++ HPAPME+ TSE V DAK+WARVQATV TVPPGPLGVVLDGEVGDRPVVLE+ G S F A + G A P+ G+ P P PK+TR++RA+RLL+ LA KHH + N ++ G S G+ G+ A+A SPLVTATD+ATVRPGMVLA+VAA GQGVSE+AVDTLGMGVKEAIETLVRYQHLHRAITF+DP G S++K + + G A AGVTCP+SV VTV EA+GLKRSD+FTADPFAW+RLGGSSHKT+VCRST RP+WGETFKF +LSLERSL+VQ+WDADELGADV LGET+VDL+ LPVNNPFQ PD + V D W++LQV GGS S +RLKI IDQQL+V++HKKKVDSAARLLQ AMRSFV RRQ L+ + GG P S ++ XXXXX G SSRKSVAGAVGGGWEASGAHAASTL DVFP E +D G ++GVS +V KFLEGPALERF G G VRF E DEAARPG SVCKDCLSDV SLLAVAMAPA A T ME
Sbjct: 49 VIHGESFIVTAGPNDSVRWLQQEASALFSKEHNFRTHVVQVVETYLRDIFQANADALGGGDEGGDASLHPLKPESLVRKAISTKDRTVFHPAPMEDGTSE-VADAKIWARVQATVRDVIGGFGVTVPPGPLGVVLDGEVGDRPVVLEIPGQSDPAHVFQTVDGSGDNAAGSTMPEGFATTPT-GTNPAATTTPFKVKPKVTRKDRAKRLLLNLATKHHFHTNATATSNSSPVGISXXXXXXXXXXXXXGSXXXXXXXXXGHEALA------------SPLVTATDAATVRPGMVLAAVAARGGQGVSEEAVDTLGMGVKEAIETLVRYQHLHRAITFIDPPSGWSSEKDLDMAGGAVGAGVTCPYSVGVTVVEARGLKRSDIFTADPFAWLRLGGSSHKTSVCRST--SRPRWGETFKFALLSLERSLVVQVWDADELGADVLLGETSVDLNKLPVNNPFQSPDGAGGAVADVWYNLQVERGGSEGGSSVGSRGIRLKISIDQQLHVAIHKKKVDSAARLLQGAMRSFVFRRQTLTNRQKQGREGGGAPPLPPRSQTATDXXXXXXXXXXXXXXXXXXXXXADSEDAAGRGVRGGGGMGCGGLRQQSSRKSVAGAVGGGWEASGAHAASTLADVFPDEVEDAGXXXXXXXXXXXXXXXGDPATRGVSAIVTKFLEGPALERFASGGMGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRFXXXXXXXXXXXXXEGDEAARPGASVCKDCLSDVGSLLAVAMAPAEAARTTME 816
BLAST of mRNA_H-paniculata_contig3205.8627.1 vs. uniprot
Match: A0A8J6C8Z8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8Z8_DIALT) HSP 1 Score: 57.8 bits (138), Expect = 4.550e-5 Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 1024 VTVSEAKGLKRSDLFT-ADPFAWVRLGGSSHKTAVCRSTRQDR-PQWGETFKFMVLSLERSLMVQIWDADELGADVQLGETAVDLSGLPVNNPFQPDSSVVD 1323
V V A L DL + +DP+ ++L S +T R+ R D P WGET V+ ++ L+V++WDADELG+D +G V ++ P QP V+
Sbjct: 192 VRVVCASNLVSMDLLSPSDPYCVLKLAQQSMRT---RTVRDDNAPSWGETLSLNVIEPQQVLLVEVWDADELGSDQLIGTAHVPIAAA-CTQPSQPTPITVE 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3205.8627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3205.8627.1 >prot_H-paniculata_contig3205.8627.1 ID=prot_H-paniculata_contig3205.8627.1|Name=mRNA_H-paniculata_contig3205.8627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=600bp MVLASVAALQGQGVSEKAVDTLGMGVKEAIETLVRYQHLHRAITFVDPQPback to top mRNA from alignment at H-paniculata_contig3205:2428..18363- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3205.8627.1 ID=mRNA_H-paniculata_contig3205.8627.1|Name=mRNA_H-paniculata_contig3205.8627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15936bp|location=Sequence derived from alignment at H-paniculata_contig3205:2428..18363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3205:2428..18363- >mRNA_H-paniculata_contig3205.8627.1 ID=mRNA_H-paniculata_contig3205.8627.1|Name=mRNA_H-paniculata_contig3205.8627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3600bp|location=Sequence derived from alignment at H-paniculata_contig3205:2428..18363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |