mRNA_H-paniculata_contig3202.8625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3202.8625.1
Unique NamemRNA_H-paniculata_contig3202.8625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3202.8625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3202contigH-paniculata_contig3202:10569..10935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.7614183-CDS-H-paniculata_contig3202:10568..109341622929987.7614183-CDS-H-paniculata_contig3202:10568..10934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3202 10569..10934 +
1691481099.3376546-CDS-H-paniculata_contig3202:10568..109341691481099.3376546-CDS-H-paniculata_contig3202:10568..10934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3202 10569..10934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3202.8625.1prot_H-paniculata_contig3202.8625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3202 10569..10934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3202.8625.1

>prot_H-paniculata_contig3202.8625.1 ID=prot_H-paniculata_contig3202.8625.1|Name=mRNA_H-paniculata_contig3202.8625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LDIGYVVSYNGFGAVKVVIQGSQEALDTDKRDDDHSTAEAASNMDFEIVK
GGFPDGAQRIENDGLTSVAVIDGLWGTFASIVTYQPMVIPEEIRDENIRV
TFEILSEEGEIKHESEMNPSGK
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mRNA from alignment at H-paniculata_contig3202:10569..10935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3202.8625.1 ID=mRNA_H-paniculata_contig3202.8625.1|Name=mRNA_H-paniculata_contig3202.8625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=367bp|location=Sequence derived from alignment at H-paniculata_contig3202:10569..10935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACATCGGTTATGTCGTGAGCTACAATGGGTTTGGGGCGGTTAAGGT
GGTAATACAGGGGTCTCAAGAGGCGTTGGATACAGACAAACGAGACGATG
ACCATAGCACGGCAGAAGCGGCATCAAACATGGACTTCGAAATTGTCAAA
GGGGGCTTTCCTGACGGCGCGCAACGTATCGAAAATGATGGTTTGACATC
AGTTGCCGTGATCGATGGCTTGTGGGGTACGTTTGCTTCTATTGTGACGT
ACCAACCGATGGTGATCCCTGAAGAGATACGGGACGAAAACATTCGAGTC
ACGTTTGAGATCCTGTCTGAGGAAGGAGAAATCAAACATGAATCGGAGAT
GAATCCGAGTGGAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3202:10569..10935+

>mRNA_H-paniculata_contig3202.8625.1 ID=mRNA_H-paniculata_contig3202.8625.1|Name=mRNA_H-paniculata_contig3202.8625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig3202:10569..10935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACATCGGTTATGTCGTGAGCTACAATGGGTTTGGGGCGGTTAAGGT
GGTAATACAGGGGTCTCAAGAGGCGTTGGATACAGACAAACGAGACGATG
ACCATAGCACGGCAGAAGCGGCATCAAACATGGACTTCGAAATTGTCAAA
GGGGGCTTTCCTGACGGCGCGCAACGTATCGAAAATGATGGTTTGACATC
AGTTGCCGTGATCGATGGCTTGTGGGGTACGTTTGCTTCTATTGTGACGT
ACCAACCGATGGTGATCCCTGAAGAGATACGGGACGAAAACATTCGAGTC
ACGTTTGAGATCCTGTCTGAGGAAGGAGAAATCAAACATGAATCGGAGAT
GAATCCGAGTGGAAAACTGGACATCGGTTATGTCGTGAGCTACAATGGGT
TTGGGGCGGTTAAGGTGGTAATACAGGGGTCTCAAGAGGCGTTGGATACA
GACAAACGAGACGATGACCATAGCACGGCAGAAGCGGCATCAAACATGGA
CTTCGAAATTGTCAAAGGGGGCTTTCCTGACGGCGCGCAACGTATCGAAA
ATGATGGTTTGACATCAGTTGCCGTGATCGATGGCTTGTGGGGTACGTTT
GCTTCTATTGTGACGTACCAACCGATGGTGATCCCTGAAGAGATACGGGA
CGAAAACATTCGAGTCACGTTTGAGATCCTGTCTGAGGAAGGAGAAATCA
AACATGAATCGGAGATGAATCCGAGTGGAAAA
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