mRNA_H-paniculata_contig32005.8622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32005.8622.1
Unique NamemRNA_H-paniculata_contig32005.8622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32005.8622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32005contigH-paniculata_contig32005:1050..1984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size217
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32005.8622.1prot_H-paniculata_contig32005.8622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32005 1050..1984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.2502854-CDS-H-paniculata_contig32005:1049..11341622929987.2502854-CDS-H-paniculata_contig32005:1049..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1050..1134 +
1691481099.1404176-CDS-H-paniculata_contig32005:1049..11341691481099.1404176-CDS-H-paniculata_contig32005:1049..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1050..1134 +
1622929987.2714486-CDS-H-paniculata_contig32005:1327..14191622929987.2714486-CDS-H-paniculata_contig32005:1327..1419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1328..1419 +
1691481099.151552-CDS-H-paniculata_contig32005:1327..14191691481099.151552-CDS-H-paniculata_contig32005:1327..1419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1328..1419 +
1622929987.2885864-CDS-H-paniculata_contig32005:1945..19841622929987.2885864-CDS-H-paniculata_contig32005:1945..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1946..1984 +
1691481099.1602614-CDS-H-paniculata_contig32005:1945..19841691481099.1602614-CDS-H-paniculata_contig32005:1945..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32005 1946..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32005.8622.1

>prot_H-paniculata_contig32005.8622.1 ID=prot_H-paniculata_contig32005.8622.1|Name=mRNA_H-paniculata_contig32005.8622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
AGAGRREWGVKVILQKYESNNGRIPTDLEFTEQPTMDEEEMLTEIGMLRI
NPAVFSALEDLDRDGFIAVTSS
back to top

mRNA from alignment at H-paniculata_contig32005:1050..1984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32005.8622.1 ID=mRNA_H-paniculata_contig32005.8622.1|Name=mRNA_H-paniculata_contig32005.8622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=935bp|location=Sequence derived from alignment at H-paniculata_contig32005:1050..1984+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGAGCCGGCCGACGTGAGTGGGGAGTGAAGGTCATTCTCCAAAAGTA
CGAGAGCAACAACGGACGGATACCTACCGACCTGGGTAACACAAGAACAC
GGGTTAATAGTAAACGTGAACGTATCCGTTTCGGGGGTTTTGCTCTAACG
TTGGCTAATTTTCCCCTGTGTTTCGTATATTTTTATGTGTTTGTTTAGGT
CTCTCTCTATTTCTCTCTCTCTCTCTCTCTTGTGGTTTCTTACCGTTACC
ACCCGATCAAACAATCGTCTTGTGTCAGAATTTACCGAGCAACCGACGAT
GGATGAGGAGGAAATGCTGACTGAGATCGGTATGCTCCGGATCAACCCGG
CAGTGTTCAGCGCGCTAGAGGTGAGCTAACGCGCTAGGGAATTGCGAGTT
TGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTCGGGTAACTTGAAAAAAAAATGTTGCGTTTCGC
CGTCCTTCGACTGGAGCGATCTACACGCGAGTCACGCAAACATCACATGT
CGAACAGACTCGGGTTCTTGGAAGCAGGATAAGCATCCCGATTACGTACC
AGATAATAGGTTTCAGGGGGGGTGATAATGATTAAGGGACTCTACTACCC
CACCCTCTATCCTACGGTCCAACGCAGGGGGGGGGGGCGGGGGGTCATCC
AGCCCCATTTTCCCACAGCCTGGAGGTCAATCAACAGAATTCTTGTGTTT
GCTTCCTCCCTGTAAAATATATGGTGTTAGTTCGCTCGCGTTCCGCCTCC
CCGGTTGCCGCCCGCATTATTTGCGATTTTTCTTTTCCAACTCTAGGATC
TCGATCGCGACGGTTTTATTGCCGTTACATCATCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig32005:1050..1984+

>mRNA_H-paniculata_contig32005.8622.1 ID=mRNA_H-paniculata_contig32005.8622.1|Name=mRNA_H-paniculata_contig32005.8622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig32005:1050..1984+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGAGCCGGCCGACGTGAGTGGGGAGTGAAGGTCATTCTCCAAAAGTA
CGAGAGCAACAACGGACGGATACCTACCGACCTGGGCAGGAGCCGGCCGA
CGTGAGTGGGGAGTGAAGGTCATTCTCCAAAAGTACGAGAGCAACAACGG
ACGGATACCTACCGACCTGGAATTTACCGAGCAACCGACGATGGATGAGG
AGGAAATGCTGACTGAGATCGGTATGCTCCGGATCAACCCGGCAGTGTTC
AGCGCGCTAGAGAATTTACCGAGCAACCGACGATGGATGAGGAGGAAATG
CTGACTGAGATCGGTATGCTCCGGATCAACCCGGCAGTGTTCAGCGCGCT
AGAGGATCTCGATCGCGACGGTTTTATTGCCGTTACATCATCAGATCTCG
ATCGCGACGGTTTTATTGCCGTTACATCATCA
back to top