mRNA_H-paniculata_contig32001.8621.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32001.8621.1
Unique NamemRNA_H-paniculata_contig32001.8621.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.300e-8
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRLS 387
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G++   T  R++
Sbjct:  951 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGESVYFPLWGDLFVQTGHRIN 1078
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BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.040e-8
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRL 384
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G++   T  R+
Sbjct:  473 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGESVYFPLWGDLFVQTGHRI 599
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BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.150e-8
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRL 384
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G++   T  R+
Sbjct:  853 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGESVYFPLWGDLFVQTGHRI 979
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BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.830e-8
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTR 381
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G++   T  R
Sbjct:  275 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGESVYFPLWGDLFVQTSHR 400
[Close]
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5KKS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.640e-8
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:  133 RLPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSLRVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRLSP 390
            R+P+ GYG +T+VF T  C   +++   AHVPE  +N  SL   A+  + S  ++ G+ +    G ++ FPR G + T    ++ P
Sbjct:   27 RIPLLGYGDVTVVFLTERCRVPVVILNAAHVPESPHNLLSLLALAEEGHTSSGQKGGLTLTTRAGGKVWFPRTGKLLTQEGYQIEP 112
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BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.230e-7
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRL 384
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G++   T  R+
Sbjct:  316 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELIYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGESVYFPLWGDLFVQTGHRI 442
[Close]
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.640e-6
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL 255
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL
Sbjct:   49 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 131
[Close]
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5KRW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.980e-6
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSLRVAADLNYPSVI-ERSGVRVAMDGGKELIFP 345
            EQ  +E ++AD+GAT H  PS +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL          +  +   + V + GG  + FP
Sbjct:  502 EQARQERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLATDERELEVFVGGGGSVYFP 615
[Close]
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A0A9YZ05_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YZ05_LYGHE)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-6
Identity = 36/107 (33.64%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:   19 EVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVRLPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSLRVAADLNYPSVIERSGVRVAMDGGKELI 339
            +VWI DSG+++H T  R+   +  K+  T Y+ + S  RLP+ G G + I     +  Y+ ++  V +VPEL  N FS           V E S  RV    GK+L+
Sbjct:  278 DVWILDSGSSLHMTGHREYFSSIDKSFETKYVVLGSNTRLPVHGTGTVMIKKMINDVWYDSIIKDVLYVPELKRNLFSEGQLTSKGLVIVKEGSHARVY--DGKKLV 382
[Close]
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.020e-6
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:    4 EQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVR-LPIEGYGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSL---------RVAADLNYPSVIERSGVRVAMDGGKELIFPRNGNMNTLTRTRL 384
            EQ  +E ++AD+GA  H  P  +   NY + D    LSVA+G +   I GYG + +   +     +LLL +VAHVPEL  N  SL         R+AAD       ER  + V + GG+ + FP  G +   T  R+
Sbjct:  473 EQARQERFVADTGAPNHMFPRANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLKQTKGRLAAD-------ERE-LEVFVGGGEPVYFPLWGELFVQTGHRI 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32001.8621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JNN1_9PHAE5.300e-836.23CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4H5_9PHAE7.040e-836.50CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE7.150e-836.50CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPC5_9PHAE8.830e-836.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKS4_9PHAE9.640e-832.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFZ8_9PHAE2.230e-736.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDA4_9PHAE1.640e-642.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW7_9PHAE1.980e-635.34CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A0A9YZ05_LYGHE2.640e-633.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5LGF7_9PHAE4.020e-635.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32001contigH-paniculata_contig32001:2125..2523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.1935549-CDS-H-paniculata_contig32001:2124..25231622929987.1935549-CDS-H-paniculata_contig32001:2124..2523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32001 2125..2523 -
1691481099.1266358-CDS-H-paniculata_contig32001:2124..25231691481099.1266358-CDS-H-paniculata_contig32001:2124..2523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32001 2125..2523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32001.8621.1prot_H-paniculata_contig32001.8621.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32001 2125..2523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32001.8621.1

>prot_H-paniculata_contig32001.8621.1 ID=prot_H-paniculata_contig32001.8621.1|Name=mRNA_H-paniculata_contig32001.8621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
AEQGGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLSVASGVRLPIEG
YGKLTIVFKTPECNYELLLGKVAHVPELGNNPFSLRVAADLNYPSVIERS
GVRVAMDGGKELIFPRNGNMNTLTRTRLSPLTN
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mRNA from alignment at H-paniculata_contig32001:2125..2523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32001.8621.1 ID=mRNA_H-paniculata_contig32001.8621.1|Name=mRNA_H-paniculata_contig32001.8621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig32001:2125..2523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAGCAAGGAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGT
TCATACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACG
GAACAACTTACTTGTCTGTTGCGTCAGGTGTACGGCTACCCATCGAGGGG
TATGGAAAGCTGACGATAGTCTTCAAAACGCCAGAATGCAATTACGAACT
GCTTCTGGGGAAGGTTGCACACGTACCAGAACTAGGTAACAACCCCTTTT
CCCTTCGGGTTGCGGCTGATCTAAATTATCCATCAGTAATTGAACGATCG
GGGGTACGCGTGGCCATGGATGGCGGAAAAGAATTAATATTTCCGCGTAA
CGGGAACATGAACACCTTGACCCGTACCCGCCTCTCGCCGCTAACCAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig32001:2125..2523-

>mRNA_H-paniculata_contig32001.8621.1 ID=mRNA_H-paniculata_contig32001.8621.1|Name=mRNA_H-paniculata_contig32001.8621.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig32001:2125..2523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAGCAAGGAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGT
TCATACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACG
GAACAACTTACTTGTCTGTTGCGTCAGGTGTACGGCTACCCATCGAGGGG
TATGGAAAGCTGACGATAGTCTTCAAAACGCCAGAATGCAATTACGAACT
GCTTCTGGGGAAGGTTGCACACGTACCAGAACTAGGTAACAACCCCTTTT
CCCTTCGGGTTGCGGCTGATCTAAATTATCCATCAGTAATTGAACGATCG
GGGGTACGCGTGGCCATGGATGGCGGAAAAGAATTAATATTTCCGCGTAA
CGGGAACATGAACACCTTGACCCGTACCCGCCTCTCGCCGCTAACCAATG
CAGAGCAAGGAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTT
CATACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGG
AACAACTTACTTGTCTGTTGCGTCAGGTGTACGGCTACCCATCGAGGGGT
ATGGAAAGCTGACGATAGTCTTCAAAACGCCAGAATGCAATTACGAACTG
CTTCTGGGGAAGGTTGCACACGTACCAGAACTAGGTAACAACCCCTTTTC
CCTTCGGGTTGCGGCTGATCTAAATTATCCATCAGTAATTGAACGATCGG
GGGTACGCGTGGCCATGGATGGCGGAAAAGAATTAATATTTCCGCGTAAC
GGGAACATGAACACCTTGACCCGTACCCGCCTCTCGCCGCTAACCAAT
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