mRNA_H-paniculata_contig320.8617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig320.8617.1
Unique NamemRNA_H-paniculata_contig320.8617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig320.8617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig320contigH-paniculata_contig320:16086..18714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size283
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig320.8617.1prot_H-paniculata_contig320.8617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig320 16122..18714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.751979-UTR-H-paniculata_contig320:16085..161211622929985.751979-UTR-H-paniculata_contig320:16085..16121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig320 16086..16121 +
1691481098.5854108-UTR-H-paniculata_contig320:16085..161211691481098.5854108-UTR-H-paniculata_contig320:16085..16121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig320 16086..16121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.7672465-CDS-H-paniculata_contig320:16121..163431622929985.7672465-CDS-H-paniculata_contig320:16121..16343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig320 16122..16343 +
1691481098.5984333-CDS-H-paniculata_contig320:16121..163431691481098.5984333-CDS-H-paniculata_contig320:16121..16343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig320 16122..16343 +
1622929985.7784405-CDS-H-paniculata_contig320:18690..187141622929985.7784405-CDS-H-paniculata_contig320:18690..18714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig320 18691..18714 +
1691481098.6057744-CDS-H-paniculata_contig320:18690..187141691481098.6057744-CDS-H-paniculata_contig320:18690..18714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig320 18691..18714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig320.8617.1

>prot_H-paniculata_contig320.8617.1 ID=prot_H-paniculata_contig320.8617.1|Name=mRNA_H-paniculata_contig320.8617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MEVKYICGSSHKAIGFTLGFAFFLVLLHTIGAFVSTSPLPKLRSPKDTRC
RQMHAERHTSPAMDANTQQQRPKEVVVVGGGW
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mRNA from alignment at H-paniculata_contig320:16086..18714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig320.8617.1 ID=mRNA_H-paniculata_contig320.8617.1|Name=mRNA_H-paniculata_contig320.8617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2629bp|location=Sequence derived from alignment at H-paniculata_contig320:16086..18714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCACAGGTAGAATAGGTAGGTGGCTGTGACGAAATGGAGGTGAAATA
TATATGTGGTTCAAGTCACAAGGCTATTGGCTTCACTCTCGGCTTCGCTT
TCTTCTTGGTTCTACTGCATACAATTGGCGCGTTTGTGTCAACATCGCCG
CTTCCAAAATTGAGATCGCCAAAAGATACTCGATGTCGACAGATGCATGC
AGAACGACATACCTCTCCCGCCATGGACGCCAATACTCAGCAGCAGCGCC
CCAAAGAGGCAAGTAGGTTCTGCGCTCTGAGATAGAGATGTAGATAATGG
TGACCTAGACGCGTTGTGGTATATTAAGCGTCGGTTGACATCCGGTATAT
AGAGCTAGGCAGTAGAGCTCGTGTCAGCAGCTGCAACTTACTGCAAACAC
GTCAGACTGAGATTCTACAGATTAGATTACGGACCCACCTAGATACGCAT
GTACTGTGGCATAATGCTGCAATGAACACCGCGCAGAAAAGGAGAACACT
TACGTGGCGAAAAACACAGATGAACCCTGGTCGTGCAAAAGCTGTCAGCA
TTTCACAGACTGTATGTCAATCTGTGTCGAGCGAAACCTAACTCGAACCT
GCAAACTGTTACTTTTAAAAATCCTGCTATCTGGTATTTATATCCATGTA
CTGTAGTATTTATGTACTAATTATGTACTAATTATGTGAAACCATACTGT
TGCACTGGTCGAACATTCCCCATACCTGCGACAGGCTGACTTACTTCATC
GCTGAAGGAACGCAGTGTTTTCAAGTCGCTAAAGAAACATCGTACTGTAA
TCTCAAGTGCGTACGGAGTGCGCGTCAAAGTATAGTCTCATTCGTTCGTC
TCTCTCGAATTTAAACGTAAAGTAGCGAACCGTAGCAGTACCAATGTCAG
GATGAAACCGGCACCCATCTCGGAGCTTAGCTTGGAGTGTATCACATGTC
GAGTCACCGGTCCACAAACAACATAGTGCTTCGCAGCGCCTCCTACACTT
TTTTCGAGTGAAAAAAAATATTTGAGTATTTAGCCGATGTCATGGCGCAC
ACCGAGCAGGCAGTGGGGAAGAAAGGGTACTAAGACAGACTACTGATGTC
AGGGTCGGGTCGCCACCGATTTGGCGGCATTTCTTTGAGTGTAGCGCTCG
GAATGCTAGAAGCAGTTGGTGAAAAGTGTCGCAAACGTGGTAGACCAGAT
ATCTATTTCGGGTTCCTTTTAGCAAATAATGATGTACATGTTCGATTCCG
TCATGATCCGTTAGGAACGATGAACCTCTCAGCTCGTTCGCGGCGGTTCC
GTGCGTATGGATTTTTTTGTAAGACAAGCCAATCACAACGCAGAAGTTAC
GGAAGACATGGTCAATGACTCAGAGCAGCCCGCACAGCTTGGAGTCAGCG
GCCGCGGCGGCTGGTGTATATCTTCCTGTCGTATCTTCGTTATATTCGTG
TGATGTGCATAGCAGCTCGACAGTCCTCTCCTCTGTCGGCATGGACTTGT
TCCGAGTGGATCTGTGCTGACTCGTATATGTGCTGTTTGCGCGTGAGATG
GCCGCAGCCGTGCTGTGCGTTGAGCAGTAAGGCCGGTTTGTGCTACCACC
GCGCTAACAAACCCCACGAAGACAGCAGTAACATGCTGCAGCAACGTTGG
CAGCAGCAGCAGCAGCAGCAGCAGCCGAGACAAAAAGGAGGTCAGGTGCA
GTGCAGTACAGTGCACTTTCTTCCTTCGCTTCCATCAGAAAGAGTGCTAC
GTCGACGAAATCACGTGTCCTCTGTACACTGTCTTTCTGTACTCTCTGTG
TCGCCGTTTGGTGCACCATTGCATATACCTACGGTTACAACAACAGCACC
AGTCGAAGTGAATGTTGTCATCATTACTAGTGAGTCGGGTTCACTAGATC
CAATAACACCCCCGGCGCAGAGGATCAAGTTGGTCACCATGAGAAAAGTT
TTGCCTGCTACTAGCTCTTTCCATGGGACCGAGTCTTGGGGTAAAGATCG
CTGTGGTCGAGATGCTAGAATTTTTCAACATTGGTCTGCGGGCTGTCCTC
GCGCGCACTTTGGCAACACAAAAGATTTTTGTATTAGATTGATGCTTCGC
AAGCACTCGCTCAAAACGAGTAAAAATCACCTTTCGCACGGGGATCAAGC
ATTAATTGCTGAACAGAAGGTATTGCTACAGTCGAGAGCTTTCAAACGAA
GCTTCTCCCGGGGTGAAACTCCAAGTGGCTGTCGAGAATGTCAGACTGAA
CACATGCTTCCCACAGTATCAAAACTCGCTTCCCTCGCGCAAACTTTGCA
ATATCTTTCAAATACTTTCCCTACACCCATACCCATGGGATCGTCTCCAG
CTCCTGCAAAGTTGATTCCGACGTGCCCATCTGTGCTTAGCCTGCATCTG
GTAATTGTGGGACTGTCTGCAATACCCATCGATTGCAGTAGCGCAGACCC
ATCAGGTTCCACCTATCGGCTCGTAGCTTAACTTGCTTGAAAAGGTCCTA
TTGATACAAGTCAGTCGCACTGAAGCTACTCTAATGCTAAACTGTAGTAT
AAAGACTATAGCCGTCTGTGTGTATTGATTCTACTCTCGGTCATCGATCG
TCCAGGTAGTCGTCGTTGGCGGCGGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig320:16086..18714+

>mRNA_H-paniculata_contig320.8617.1 ID=mRNA_H-paniculata_contig320.8617.1|Name=mRNA_H-paniculata_contig320.8617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig320:16086..18714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTGAAATATATATGTGGTTCAAGTCACAAGGCTATTGGCTTCAC
TCTCGGCTTCGCTTTCTTCTTGGTTCTACTGCATACAATTGGCGCGTTTG
TGTCAACATCGCCGCTTCCAAAATTGAGATCGCCAAAAGATACTCGATGT
CGACAGATGCATGCAGAACGACATACCTCTCCCGCCATGGACGCCAATAC
TCAGCAGCAGCGCCCCAAAGAGATGGAGGTGAAATATATATGTGGTTCAA
GTCACAAGGCTATTGGCTTCACTCTCGGCTTCGCTTTCTTCTTGGTTCTA
CTGCATACAATTGGCGCGTTTGTGTCAACATCGCCGCTTCCAAAATTGAG
ATCGCCAAAAGATACTCGATGTCGACAGATGCATGCAGAACGACATACCT
CTCCCGCCATGGACGCCAATACTCAGCAGCAGCGCCCCAAAGAGGTAGTC
GTCGTTGGCGGCGGGTGGGTAGTCGTCGTTGGCGGCGGGTGG
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