mRNA_H-paniculata_contig32.8609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32.8609.1
Unique NamemRNA_H-paniculata_contig32.8609.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: D8LC21_ECTSI (VPS11_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC21_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.950e-49
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 GGATSAA--NFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYS 297
            GG++ AA  NFDV TAIRVLKSAGHADHAAELARRH EHDWFLRIQLERSQPD+ GALAYIASL F+EASKQLRRRGKPLVAALPEDTTGVLMALCTGRYS
Sbjct:  623 GGSSGAAGANFDVATAIRVLKSAGHADHAAELARRHGEHDWFLRIQLERSQPDFSGALAYIASLPFSEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYS 723
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A836CMH8_9STRA (VPS11_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.410e-29
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:   25 FDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYSRKVEQ 312
            FDV TA+RVLKSAG++DHAA LARR   HDW+LR+QLER  PDY  ALAY++ L  + A   L+R GK LVA+LPEDTT +L+ALCTG Y+    Q
Sbjct:  535 FDVETALRVLKSAGYSDHAAALARRAGAHDWYLRVQLERPSPDYADALAYMSELPPSLAETFLQRHGKALVASLPEDTTALLVALCTGSYTGSYRQ 630
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: W7TN64_9STRA (Ring zinc finger-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN64_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.050e-26
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   28 DVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRY 294
            DV  A+ +LK AG+ +HA E+AR++  H+W+LR+QLE+  P Y  ALAYI SLSF +A++ L   G+ L+A LPE+TTG L+ALCTGR+
Sbjct:  192 DVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A4D9D6J8_9STRA (VPS11_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6J8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.360e-25
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   28 DVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRY 294
            DV  A+ +LK AG+ +HA E+AR++  H+W+LR+QLE+  P Y  ALAYI SLSF +A++ L   G+ L+A LPE+TTG L+ALCTGR+
Sbjct:  635 DVQAAVSILKEAGYLEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 723
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A7S2V2C6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.270e-24
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   25 FDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYS 297
            F V TAIRVL S+G+  HA +LA+ H EH+W+LR+QLER +PDY  ALA+IAS+    A   L++ GK LV  LP++TTG++MA+CTG+ +
Sbjct:  415 FHVETAIRVLSSSGYHKHALQLAQEHREHEWYLRVQLERVEPDYQAALAHIASMPRRLAEDYLQKLGKKLVTHLPQETTGLIMAMCTGQVA 505
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A6P4ZFD8_BRABE (Vacuolar protein sorting-associated protein 11 homolog n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZFD8_BRABE)

HSP 1 Score: 91.7 bits (226), Expect = 2.340e-19
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   22 NFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCT 285
            +FDV TAI+V + AG+ DHA  LA RHS+H+W+L+IQLE  + DY  AL YI+ L F EA   +++ GK L++ +P+ TT +L  LCT
Sbjct:  467 DFDVETAIKVCRQAGYYDHALSLAERHSQHEWYLKIQLEDIK-DYQKALTYISKLGFYEAESNMKKYGKILMSEVPQQTTELLKRLCT 553
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: VPS11_DICDI (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=VPS11_DICDI)

HSP 1 Score: 90.9 bits (224), Expect = 4.340e-19
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   10 TSAANFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCT 285
            T    FDV TAI+V +  G+ D A  LA +HS HDW+L+I LE    +Y  AL YI +L + EA K L++ GK LV+ +PE+TTGVLM LCT
Sbjct:  481 TDNGTFDVETAIKVCRQGGYFDRALFLASKHSRHDWYLKILLEDLN-EYRKALDYIQTLDWEEADKNLKKYGKQLVSEIPEETTGVLMKLCT 571
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BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A8B7YEZ2_ACAPL (vacuolar protein sorting-associated protein 11 homolog isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YEZ2_ACAPL)

HSP 1 Score: 90.9 bits (224), Expect = 4.390e-19
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   22 NFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCT 285
            +FDV TAI+V + AG+  HA  LA +HS+HDW+L++QLE  + DY  AL YIA L F EA   +++ GK L++ +P DTT +L  LCT
Sbjct:  490 DFDVETAIKVCRQAGYYKHALFLAEKHSQHDWYLKVQLEDIK-DYQKALTYIAKLEFFEAMDNMKKYGKTLMSEVPRDTTDLLKILCT 576
[Close]
BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A2P6MZ35_9EUKA (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZ35_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 5.210e-18
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   22 NFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYSRKVEQGG 318
            NF++ TAI+  + AG+  HA  LA+RH +H+W+L+I LE  +  Y  AL+YI++L F EA   +++ GK L+ A PE TT  L++LCT    R  E+GG
Sbjct:  451 NFEIETAIKACRQAGYYKHAIYLAKRHEQHEWYLKILLEDGK-GYDEALSYISTLDFYEAENNMKKYGKTLIHARPEQTTQFLVSLCTNWVPRN-EKGG 547
[Close]
BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Match: A0A152A377_9MYCE (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A377_9MYCE)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-17
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   10 TSAANFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQPDYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCT 285
            T +  FDV TAI+V + AG+ +HA  LA +++ H+W+L+I LE    ++  AL YI +L F EA K L++ GK LV+ LP++TT VLM LCT
Sbjct:  469 TDSGTFDVETAIKVCRQAGYYEHALFLASKNNRHEWYLKILLE-DLSEHRKALHYIQTLEFEEADKNLKKYGKTLVSELPDETTRVLMKLCT 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32.8609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC21_ECTSI1.950e-4989.11VPS11_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CMH8_9STRA2.410e-2961.46VPS11_C domain-containing protein n=1 Tax=Tribonem... [more]
W7TN64_9STRA6.050e-2653.93Ring zinc finger-containing protein (Fragment) n=1... [more]
A0A4D9D6J8_9STRA9.360e-2553.93VPS11_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S2V2C6_9STRA2.270e-2453.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6P4ZFD8_BRABE2.340e-1950.00Vacuolar protein sorting-associated protein 11 hom... [more]
VPS11_DICDI4.340e-1951.09Vacuolar protein sorting-associated protein 11 hom... [more]
A0A8B7YEZ2_ACAPL4.390e-1950.00vacuolar protein sorting-associated protein 11 hom... [more]
A0A2P6MZ35_9EUKA5.210e-1844.44Vacuolar protein sorting-associated protein 11 hom... [more]
A0A152A377_9MYCE1.330e-1747.83Vacuolar protein sorting-associated protein 11 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32contigH-paniculata_contig32:11462..12444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue7e-42
Seed eggNOG ortholog2880.D8LC21
Preferred nameVPS11
KEGG koko:K20179
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000323,GO:0000325,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005856,GO:0005884,GO:0006810,GO:0006887,GO:0006904,GO:0006906,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008150,GO:0008333,GO:0009705,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019904,GO:0019905,GO:0022406,GO:0030139,GO:0030674,GO:0030897,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031338,GO:0031410,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032940,GO:0032991,GO:0033043,GO:0033263,GO:0034058,GO:0035542,GO:0042144,GO:0042176,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051649,GO:0060090,GO:0060255,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0080090,GO:0080171,GO:0090174,GO:0097576,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901998,GO:1902115,GO:1903362,GO:1903364,GO:1903649,GO:1903651,GO:2000641,GO:2000643
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2114@1,KOG2114@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.2696204-CDS-H-paniculata_contig32:11463..116751622929985.2696204-CDS-H-paniculata_contig32:11463..11675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 11464..11675 -
1691481098.353127-CDS-H-paniculata_contig32:11463..116751691481098.353127-CDS-H-paniculata_contig32:11463..11675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 11464..11675 -
1622929985.286058-CDS-H-paniculata_contig32:12338..124441622929985.286058-CDS-H-paniculata_contig32:12338..12444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 12339..12444 -
1691481098.3638482-CDS-H-paniculata_contig32:12338..124441691481098.3638482-CDS-H-paniculata_contig32:12338..12444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 12339..12444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32.8609.1prot_H-paniculata_contig32.8609.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32 11464..12444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32.8609.1

>prot_H-paniculata_contig32.8609.1 ID=prot_H-paniculata_contig32.8609.1|Name=mRNA_H-paniculata_contig32.8609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
GGATSAANFDVVTAIRVLKSAGHADHAAELARRHSEHDWFLRIQLERSQP
DYPGALAYIASLSFAEASKQLRRRGKPLVAALPEDTTGVLMALCTGRYSR
KVEQGG
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mRNA from alignment at H-paniculata_contig32:11462..12444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32.8609.1 ID=mRNA_H-paniculata_contig32.8609.1|Name=mRNA_H-paniculata_contig32.8609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=983bp|location=Sequence derived from alignment at H-paniculata_contig32:11462..12444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGAGCCACCTCAGCGGCGAATTTCGATGTGGTAACGGCTATCCGCGT
GCTGAAATCAGCAGGTCATGCTGATCACGCGGCTGAGCTGGCAAGGCGGC
ATAGTGGTAAGTGTTACGATACTCTAACGGTGGAAGCGTAAGTATCTTGT
TACAGGAATTGTACCTAACGTGCTACGGGAAGTGTAGCACGGTCCAGAAT
TTAAGAGGGTTAATGTATCTTGAGCATATGTTAAGAGGTTAGTTTGGTTG
TCGATGGTACTGTCTGTACGTGTGACCGTGGTGACGGCAATCTACTCAAG
CGCTGAATGGTTGTGTCTTATCTTAAGAAAGTCATGTCACGTCCCCCGCC
TTGATTCATCATTCGACAGTATCAAAGATCGCCTTTTCGAAAAGAGTTTG
AGAACCACTTGGACGAGTAGCAGGCATGTTAGTAGTTGTTAACACGTCGT
TGGTCTTGTGTTATGATGTGCAAAAAGTGCATCCTTCTGAGTGCAGAAGA
TGCCCTGATGTCCAAATATCCTGATATCCCGCTTAGTGAACCTATCTTTC
TTAGTAGTAGACTCAGTGCCGTAAATGTTATTGCCACTTGTCTCTCCCCC
CCTCCCCCCAATGAGCGATTGGACATTATCCATCCGAGGTAGCTCTCATA
GGAACGAAGCTCGGTTTTTCTGAGGGTGTATGGATAATGCTCTAATCGCT
AACGCAGGAAACCATATGTACCTGCCGCCCTTTCCCCACTCCCCCTCCCG
CCCCCTCTGTGTCAACCAGAGCACGATTGGTTCCTCCGCATCCAGTTAGA
ACGGTCCCAGCCTGACTACCCGGGAGCGTTAGCTTACATCGCGTCGCTGT
CCTTTGCTGAGGCATCCAAGCAGCTGAGGCGTAGGGGTAAACCCTTAGTC
GCCGCCTTGCCGGAGGACACTACCGGCGTGCTCATGGCGCTCTGCACGGG
GCGATACTCGAGAAAGGTCGAGCAAGGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig32:11462..12444-

>mRNA_H-paniculata_contig32.8609.1 ID=mRNA_H-paniculata_contig32.8609.1|Name=mRNA_H-paniculata_contig32.8609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig32:11462..12444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGAGCCACCTCAGCGGCGAATTTCGATGTGGTAACGGCTATCCGCGT
GCTGAAATCAGCAGGTCATGCTGATCACGCGGCTGAGCTGGCAAGGCGGC
ATAGTGGGCGGAGCCACCTCAGCGGCGAATTTCGATGTGGTAACGGCTAT
CCGCGTGCTGAAATCAGCAGGTCATGCTGATCACGCGGCTGAGCTGGCAA
GGCGGCATAGTGAGCACGATTGGTTCCTCCGCATCCAGTTAGAACGGTCC
CAGCCTGACTACCCGGGAGCGTTAGCTTACATCGCGTCGCTGTCCTTTGC
TGAGGCATCCAAGCAGCTGAGGCGTAGGGGTAAACCCTTAGTCGCCGCCT
TGCCGGAGGACACTACCGGCGTGCTCATGGCGCTCTGCACGGGGCGATAC
TCGAGAAAGGTCGAGCAAGGAGGGAGCACGATTGGTTCCTCCGCATCCAG
TTAGAACGGTCCCAGCCTGACTACCCGGGAGCGTTAGCTTACATCGCGTC
GCTGTCCTTTGCTGAGGCATCCAAGCAGCTGAGGCGTAGGGGTAAACCCT
TAGTCGCCGCCTTGCCGGAGGACACTACCGGCGTGCTCATGGCGCTCTGC
ACGGGGCGATACTCGAGAAAGGTCGAGCAAGGAGGG
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