mRNA_H-paniculata_contig11334.861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11334.861.1
Unique NamemRNA_H-paniculata_contig11334.861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.060e-25
Identity = 48/77 (62.34%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   13 VLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELC 243
            +L CP+  +  LAKQ+Q++L+PYNYILDP IR A S+ LEGAVVILDEAHN+E VCRDAGSLE+++ D+ ++A +LC
Sbjct:  338 LLACPYYLSMALAKQAQIVLMPYNYILDPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLC 414
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A8I6XRQ3_HORVV (Helicase ATP-binding domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XRQ3_HORVV)

HSP 1 Score: 97.8 bits (242), Expect = 9.010e-22
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +N+ G++VILDEAHNIE + RD+GS+++  + L SLA EL +LAT
Sbjct:  243 QVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDINIAGSIVILDEAHNIEDISRDSGSVDVDEESLNSLAEELAKLAT 324
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.660e-21
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   46 LAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELC 243
            LAKQ+Q++L+PYNYILDP +R A S+ LEGAVVILDEAHN+E VCRDAGSLE+++ D+ ++A +LC
Sbjct:    3 LAKQAQIVLMPYNYILDPSVRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLC 68
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A453LKP3_AEGTS (Helicase ATP-binding domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LKP3_AEGTS)

HSP 1 Score: 96.3 bits (238), Expect = 3.030e-21
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +N+ G++VILDEAHNIE + RD+GS+++  + L SL  EL +LAT
Sbjct:  207 QVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDINIAGSIVILDEAHNIEDIARDSGSVDVDEESLNSLKEELAKLAT 288
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A446UJA2_TRITD (Helicase ATP-binding domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJA2_TRITD)

HSP 1 Score: 96.3 bits (238), Expect = 3.080e-21
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +N+ G++VILDEAHNIE + RD+GS+++  + L SL  EL +LAT
Sbjct:  237 QVQGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDINIAGSIVILDEAHNIEDIARDSGSVDVDEESLNSLKEELAKLAT 318
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A3B6LQP8_WHEAT (Helicase ATP-binding domain-containing protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A3B6LQP8_WHEAT)

HSP 1 Score: 96.3 bits (238), Expect = 3.130e-21
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +N+ G++VILDEAHNIE + RD+GS+++  + L SL  EL +LAT
Sbjct:  237 QVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDINIAGSIVILDEAHNIEDIARDSGSVDVDEESLNSLKEELAKLAT 318
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A3B6KNE2_WHEAT (Helicase ATP-binding domain-containing protein n=16 Tax=Triticinae TaxID=1648030 RepID=A0A3B6KNE2_WHEAT)

HSP 1 Score: 96.3 bits (238), Expect = 3.130e-21
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +N+ G++VILDEAHNIE + RD+GS+++  + L SL  EL +LAT
Sbjct:  318 QVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDINIAGSIVILDEAHNIEDIARDSGSVDVDEESLNSLKEELAKLAT 399
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BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: UPI001F5C14DB (Fanconi anemia group J protein homolog n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C14DB)

HSP 1 Score: 95.9 bits (237), Expect = 4.250e-21
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ LA+ +QL+  PYNY++ P +R+A  +++ G+VVILDEAHNIE + R+AGS+++  + L SL  EL RLAT
Sbjct:   55 QVKGCPYFAAQTLAEAAQLVFCPYNYLISPIVRRAMDIDIRGSVVILDEAHNIEDISREAGSVDVDAESLDSLDGELARLAT 136
[Close]
BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: A0A0Q3LFA9_BRADI (Helicase ATP-binding domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3LFA9_BRADI)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-20
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ +A+ +QL+  PYNY++ P +R+A  +++ G++VILDEAHNIE + RDAGS+++  + L +LA EL  LAT
Sbjct:  238 QVKGCPYFAAQTMAETAQLVFCPYNYLISPIVRRAMDIDISGSIVILDEAHNIEDIARDAGSVDVDEESLTTLAGELANLAT 319
[Close]
BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Match: UPI001F5E0733 (Fanconi anemia group J protein homolog n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E0733)

HSP 1 Score: 93.6 bits (231), Expect = 2.760e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   10 QVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVILDEAHNIESVCRDAGSLELTVQDLGSLAVELCRLAT 255
            QV GCP+  AQ LA+ +QL+  PYNY++ P +R+A  +++ G+VVILDEAHNIE + R+AGS+++  + L SL  EL  LAT
Sbjct:  233 QVKGCPYFAAQTLAEAAQLVFCPYNYLISPIVRRAMDIDIRGSVVILDEAHNIEDISREAGSVDVDAESLDSLDGELASLAT 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11334.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZN2_9PHAE7.060e-2562.34Helicase ATP-binding domain-containing protein n=1... [more]
A0A8I6XRQ3_HORVV9.010e-2251.22Helicase ATP-binding domain-containing protein n=1... [more]
D8LEJ0_ECTSI1.660e-2166.67Helicase ATP-binding domain-containing protein n=1... [more]
A0A453LKP3_AEGTS3.030e-2150.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A446UJA2_TRITD3.080e-2150.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A3B6LQP8_WHEAT3.130e-2150.00Helicase ATP-binding domain-containing protein n=5... [more]
A0A3B6KNE2_WHEAT3.130e-2150.00Helicase ATP-binding domain-containing protein n=1... [more]
UPI001F5C14DB4.250e-2152.44Fanconi anemia group J protein homolog n=1 Tax=Lol... [more]
A0A0Q3LFA9_BRADI1.090e-2050.00Helicase ATP-binding domain-containing protein n=1... [more]
UPI001F5E07332.760e-2051.22Fanconi anemia group J protein homolog n=1 Tax=Lol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11334contigH-paniculata_contig11334:5680..6782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D8LEJ0
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size274
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928841.708194-CDS-H-paniculata_contig11334:5679..57721622928841.708194-CDS-H-paniculata_contig11334:5679..5772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 5680..5772 +
1691480640.9905958-CDS-H-paniculata_contig11334:5679..57721691480640.9905958-CDS-H-paniculata_contig11334:5679..5772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 5680..5772 +
1622928841.7186103-CDS-H-paniculata_contig11334:6602..67821622928841.7186103-CDS-H-paniculata_contig11334:6602..6782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 6603..6782 +
1691480641.0019855-CDS-H-paniculata_contig11334:6602..67821691480641.0019855-CDS-H-paniculata_contig11334:6602..6782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 6603..6782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11334.861.1prot_H-paniculata_contig11334.861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11334 5680..6782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11334.861.1

>prot_H-paniculata_contig11334.861.1 ID=prot_H-paniculata_contig11334.861.1|Name=mRNA_H-paniculata_contig11334.861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
GKSQVLGCPFITAQVLAKQSQLLLVPYNYILDPQIRKATSVNLEGAVVIL
DEAHNIESVCRDAGSLELTVQDLGSLAVELCRLATVGILR*
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mRNA from alignment at H-paniculata_contig11334:5680..6782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11334.861.1 ID=mRNA_H-paniculata_contig11334.861.1|Name=mRNA_H-paniculata_contig11334.861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-paniculata_contig11334:5680..6782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGTCTCAGGTGCTTGGGTGTCCGTTTATCACGGCGCAGGTTCTCGC
CAAGCAATCTCAGTTACTCCTAGTCCCCTACAACTACATACTTGTGAGTC
AAAGTGAAAAGACGTAGGATACTTTTTACTGTACTGTAGGCTGGGCATTC
TCCCGTGCGTGCACGCCCCAAGCCTTATTTGCGTGGTCGCAAACCCCAGG
CCATACACACCTTTTGTTGGTGTTTGTAAATTTGATGATGCACACATCAA
TATTGTCTAGCCGTGGTTTTGTCGGCTACATGGCCTCAACAGGAGGTATA
TTTTGTACCAAAATTACCTATAGATTGTTACAAGTTTAGCGCAGGTACAG
TGGCAACGGTCAGAGAAGTCTATTGGTTGGAGTTTGTAATGGATTTCCTA
CAGTACGAGGGTTCGCAAGGTGGGCATGTATTTGAGTCAGCGTTCATTTG
CTTGACCATGCTACGTCTGACGTGCACGTGAATCACGCGCGAGTGATACG
GTTACATGCCCCATAATCCATGGTATATGATGTAATACTCCATCCTTCTG
TTTCCGTTCCAAGCGGTACCACTGTATCAATCCCCGACCACTCCATCTCT
CCCCATCCTTCTCTTTACATCCGGTTAGATCCCTCACAAAAGATCGCCCC
CAAGCTGTTGTAAAGTCCTCAATCCCACCCTGGCTCTCGTAACGCCCCGT
TTTTTGGTCAAGTGAAATTTTGCCGATATGTGTGCACAACTGAGGTTTGA
GGTCACCTGAAAAATAAGCTCAAAATGGATGCGATGGAGCTACTACATGA
CCGTTTTTTTATTCTGTATGACTATTTAACTGTGGCGAGTGGCTGGACTT
GTCAACGAGACTTGCAGTCCTATCCCCCGCCTCCATCCCCACCCCCACGC
GCGGTCTCCTGCGCTCTTCGCAGGACCCTCAAATTCGCAAGGCGACCTCC
GTGAACCTGGAAGGTGCCGTAGTCATTCTGGACGAGGCGCACAATATCGA
GAGTGTGTGTAGGGATGCGGGATCTTTGGAGCTGACGGTGCAGGACCTGG
GCAGCCTGGCCGTGGAGCTGTGCCGCCTGGCCACGGTGGGGATTCTCAGG
TAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11334:5680..6782+

>mRNA_H-paniculata_contig11334.861.1 ID=mRNA_H-paniculata_contig11334.861.1|Name=mRNA_H-paniculata_contig11334.861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig11334:5680..6782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGTCTCAGGTGCTTGGGTGTCCGTTTATCACGGCGCAGGTTCTCGC
CAAGCAATCTCAGTTACTCCTAGTCCCCTACAACTACATACTTGGGAAGT
CTCAGGTGCTTGGGTGTCCGTTTATCACGGCGCAGGTTCTCGCCAAGCAA
TCTCAGTTACTCCTAGTCCCCTACAACTACATACTTGACCCTCAAATTCG
CAAGGCGACCTCCGTGAACCTGGAAGGTGCCGTAGTCATTCTGGACGAGG
CGCACAATATCGAGAGTGTGTGTAGGGATGCGGGATCTTTGGAGCTGACG
GTGCAGGACCTGGGCAGCCTGGCCGTGGAGCTGTGCCGCCTGGCCACGGT
GGGGATTCTCAGGTAAGACCCTCAAATTCGCAAGGCGACCTCCGTGAACC
TGGAAGGTGCCGTAGTCATTCTGGACGAGGCGCACAATATCGAGAGTGTG
TGTAGGGATGCGGGATCTTTGGAGCTGACGGTGCAGGACCTGGGCAGCCT
GGCCGTGGAGCTGTGCCGCCTGGCCACGGTGGGGATTCTCAGGTAA
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