mRNA_H-paniculata_contig32.8610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32.8610.1
Unique NamemRNA_H-paniculata_contig32.8610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32.8610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32contigH-paniculata_contig32:25131..26258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32.8610.1prot_H-paniculata_contig32.8610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32 25413..26231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.8384268-UTR-H-paniculata_contig32:25130..254121622929984.8384268-UTR-H-paniculata_contig32:25130..25412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32 25131..25412 -
1691481098.1914778-UTR-H-paniculata_contig32:25130..254121691481098.1914778-UTR-H-paniculata_contig32:25130..25412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32 25131..25412 -
1622929984.8784187-UTR-H-paniculata_contig32:26231..262581622929984.8784187-UTR-H-paniculata_contig32:26231..26258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32 26232..26258 -
1691481098.2199523-UTR-H-paniculata_contig32:26231..262581691481098.2199523-UTR-H-paniculata_contig32:26231..26258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32 26232..26258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.8521037-CDS-H-paniculata_contig32:25412..254741622929984.8521037-CDS-H-paniculata_contig32:25412..25474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 25413..25474 -
1691481098.2015307-CDS-H-paniculata_contig32:25412..254741691481098.2015307-CDS-H-paniculata_contig32:25412..25474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 25413..25474 -
1622929984.8627915-CDS-H-paniculata_contig32:25906..262311622929984.8627915-CDS-H-paniculata_contig32:25906..26231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 25907..26231 -
1691481098.2126644-CDS-H-paniculata_contig32:25906..262311691481098.2126644-CDS-H-paniculata_contig32:25906..26231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32 25907..26231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32.8610.1

>prot_H-paniculata_contig32.8610.1 ID=prot_H-paniculata_contig32.8610.1|Name=mRNA_H-paniculata_contig32.8610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MVDGCIHTSLPDLFFCSPKDWSRILRRLRVQSSTMACIHFDTRKCLTCSE
SKCAMSIGFMGKSWSTLNSTVAPGARDAQSVLATRHAICSCATLLLAQTP
SQRQANSKELGQAHISRMYQDTVDLPVG*
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mRNA from alignment at H-paniculata_contig32:25131..26258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32.8610.1 ID=mRNA_H-paniculata_contig32.8610.1|Name=mRNA_H-paniculata_contig32.8610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig32:25131..26258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTGACGATAACACGTCTGGTGCTCATGGTGGATGGTTGTATTCACAC
CTCACTTCCCGACCTATTTTTCTGTTCACCTAAGGATTGGTCAAGGATTT
TGCGGAGGTTGAGGGTTCAAAGCTCAACGATGGCGTGCATTCATTTTGAC
ACTAGAAAATGTCTCACATGCTCGGAGTCCAAGTGCGCGATGAGTATAGG
TTTTATGGGCAAGAGCTGGTCAACGCTGAACTCAACCGTCGCACCAGGAG
CACGTGACGCGCAGTCCGTATTGGCTACTCGGCACGCTATATGCAGCTGC
GCTACACTGCTTTTAGCCCAGACACCAAGTCAAAGGCAAGCCAACTCGAA
AGGTGTGTGTGCTCAGTTGCGGTCTATAGTGTACGACTGTACAGTAAGTG
GCAATAGGAAGAATCACACAAGCTTGGAATTTGAAACCCGGACTCTGTTA
TGAGCAGGCTGGTTTCGTCTCTAGTGGTGTACCTTGATTCACAGAGGTAT
GTGTAATGCGTGGGTATTTTTGGGGTGCACCTTACTACTTCCAGGAGTAG
TTGACCTTTCCTTTTTACCAATTCTCACGGAAGGTGGAAGTTCAGGGATG
TGGCCGACGAAAAATTTAGAGCGTTTCTTTTCTTTTGGAAGCCGCAGTTT
TTCGTTTGTCCGCTTGATGACCAATGTAGACGAGTCACAACCCACGGGGT
AACTGTGGACATTCTTGCTCATCTGTATATCCTGCTCTTTTCTATACACT
TTTCTGCGGCTCACGTTTCTCTTCCGTGTACCAGAGCTGGGCCAAGCACA
TATATCACGGATGTATCAAGATACCGTGGACTTGCCCGTGGGTTGAAGTG
GGTGCCTGAGCAGGAGGATACTTCACGATGACTGCTGTTGGGCACTCGCC
TTGCATACCTTTTGTAGTACTCGGGATACGGGAAAATGGCGGCGTCGCCC
GTTTTGGCATTTAGCAGACGTCAAACTTCGTTGAACTTATGTAATCTTAT
GCAACTAAGGTATTCCTCGAGTAGTGGGCACGTTATCACTGCAAGTACAG
CTTCCTGTGTGTACTGTCTGTTGTCGCCATTTCGTAGCTTGCTGCAGAGA
CCACATCGAGAATTGTCTATTATATCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig32:25131..26258-

>mRNA_H-paniculata_contig32.8610.1 ID=mRNA_H-paniculata_contig32.8610.1|Name=mRNA_H-paniculata_contig32.8610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig32:25131..26258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGATGGTTGTATTCACACCTCACTTCCCGACCTATTTTTCTGTTC
ACCTAAGGATTGGTCAAGGATTTTGCGGAGGTTGAGGGTTCAAAGCTCAA
CGATGGCGTGCATTCATTTTGACACTAGAAAATGTCTCACATGCTCGGAG
TCCAAGTGCGCGATGAGTATAGGTTTTATGGGCAAGAGCTGGTCAACGCT
GAACTCAACCGTCGCACCAGGAGCACGTGACGCGCAGTCCGTATTGGCTA
CTCGGCACGCTATATGCAGCTGCGCTACACTGCTTTTAGCCCAGACACCA
AGTCAAAGGCAAGCCAACTCGAAAGATGGTGGATGGTTGTATTCACACCT
CACTTCCCGACCTATTTTTCTGTTCACCTAAGGATTGGTCAAGGATTTTG
CGGAGGTTGAGGGTTCAAAGCTCAACGATGGCGTGCATTCATTTTGACAC
TAGAAAATGTCTCACATGCTCGGAGTCCAAGTGCGCGATGAGTATAGGTT
TTATGGGCAAGAGCTGGTCAACGCTGAACTCAACCGTCGCACCAGGAGCA
CGTGACGCGCAGTCCGTATTGGCTACTCGGCACGCTATATGCAGCTGCGC
TACACTGCTTTTAGCCCAGACACCAAGTCAAAGGCAAGCCAACTCGAAAG
AGCTGGGCCAAGCACATATATCACGGATGTATCAAGATACCGTGGACTTG
CCCGTGGGTTGAAGCTGGGCCAAGCACATATATCACGGATGTATCAAGAT
ACCGTGGACTTGCCCGTGGGTTGA
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