mRNA_H-paniculata_contig31997.8607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31997.8607.1
Unique NamemRNA_H-paniculata_contig31997.8607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31997.8607.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.580e-20
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 AYASMEAAEGHPSRATLVLERAESEGCCLHERIWITHSDLLLAGMGAPD 147
            AYA+MEAA+GHPSRA L LERAESEGCCLHERIW+THSDLLLA MGA D
Sbjct:  265 AYAAMEAADGHPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKD 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31997.8607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI5.580e-2085.71Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31997contigH-paniculata_contig31997:2264..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D8LJP0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-17_002770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.7818067-UTR-H-paniculata_contig31997:2263..22751622929984.7818067-UTR-H-paniculata_contig31997:2263..2275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31997 2264..2275 +
1691481098.1720395-UTR-H-paniculata_contig31997:2263..22751691481098.1720395-UTR-H-paniculata_contig31997:2263..2275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31997 2264..2275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.7996228-CDS-H-paniculata_contig31997:2275..24311622929984.7996228-CDS-H-paniculata_contig31997:2275..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31997 2276..2431 +
1691481098.182123-CDS-H-paniculata_contig31997:2275..24311691481098.182123-CDS-H-paniculata_contig31997:2275..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31997 2276..2431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31997.8607.1prot_H-paniculata_contig31997.8607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31997 2276..2431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31997.8607.1

>prot_H-paniculata_contig31997.8607.1 ID=prot_H-paniculata_contig31997.8607.1|Name=mRNA_H-paniculata_contig31997.8607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MEAAEGHPSRATLVLERAESEGCCLHERIWITHSDLLLAGMGAPDLVCNF
A*
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mRNA from alignment at H-paniculata_contig31997:2264..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31997.8607.1 ID=mRNA_H-paniculata_contig31997.8607.1|Name=mRNA_H-paniculata_contig31997.8607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig31997:2264..2431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTACGCGTCTATGGAGGCCGCTGAGGGTCATCCTTCGAGGGCGACATT
GGTGCTAGAGAGAGCAGAGTCTGAAGGTTGCTGTCTGCACGAGAGGATAT
GGATCACCCACTCGGACCTCCTGCTGGCCGGCATGGGCGCGCCGGATCTG
GTGTGTAATTTCGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31997:2264..2431+

>mRNA_H-paniculata_contig31997.8607.1 ID=mRNA_H-paniculata_contig31997.8607.1|Name=mRNA_H-paniculata_contig31997.8607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig31997:2264..2431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCCGCTGAGGGTCATCCTTCGAGGGCGACATTGGTGCTAGAGAG
AGCAGAGTCTGAAGGTTGCTGTCTGCACGAGAGGATATGGATCACCCACT
CGGACCTCCTGCTGGCCGGCATGGGCGCGCCGGATCTGGTGTGTAATTTC
GCATAAATGGAGGCCGCTGAGGGTCATCCTTCGAGGGCGACATTGGTGCT
AGAGAGAGCAGAGTCTGAAGGTTGCTGTCTGCACGAGAGGATATGGATCA
CCCACTCGGACCTCCTGCTGGCCGGCATGGGCGCGCCGGATCTGGTGTGT
AATTTCGCATAA
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