mRNA_H-paniculata_contig3198.8605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3198.8605.1
Unique NamemRNA_H-paniculata_contig3198.8605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3198.8605.1 vs. uniprot
Match: D8LF98_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF98_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 3.870e-109
Identity = 168/224 (75.00%), Postives = 194/224 (86.61%), Query Frame = 1 
Query:    1 GGMDNSN-KGGIIDKFSTSRRRLKENLAQKTGKEVADNSEFQERALKVENLKEQVTKVRDAMKRQLDCSRALCLACAELGNACSEANVRDVQFQNTQYQLDEDIRKKLDEAIVTALESLESKLAPFGELEKMVTNRNRLKLDYDHYLRKVRDLKEKPASDAAKLSNNEAKLNAARQRLQESTSRLYKGFGYYDAIGGTLCQPEIEMFKKAQQQFFAAALEAVSN 669
            GG D +  KGGIIDKFST RRRLKEN+AQKTGKE  DNSEF+ER+ +V +LKE+V KVRDAMKRQLDCSRALCLACA+LGNACSE  +RDV FQN Q+QLDED+RK+LD A+  A+ESLE+K+APF EL+KM+ +RN+LKLDYDHY+RKVRDLKEKP SDAAKLSNNEAKL AARQRLQE+T +LYKGFGYYDA+GGTLCQPEIEM K+AQQ FF +A   V  
Sbjct:   35 GGADPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKG 258
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BLAST of mRNA_H-paniculata_contig3198.8605.1 vs. uniprot
Match: A0A835YV50_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV50_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.950e-61
Identity = 111/220 (50.45%), Postives = 151/220 (68.64%), Query Frame = 1 
Query:   13 NSNKG-GIIDKFSTSRRRLKENLAQKTGKEVADNSEFQERALKVENLKEQVTKVRDAMKRQLDCSRALCLACAELGNACSEANVRDVQFQNTQYQLDEDIRKKLDEAIVTALESLESKLAPFGELEKMVTNRNRLKLDYDHYLRKVRDLKEKPASDAAKLSNNEAKLNAARQRLQESTSRLYKGFGYYDAIGGTLCQPEIEMFKKAQQQFFAAALEAVSN 669
            N N G GI  K + +RRR  E L QK GKE  D+++F++R    ++L  +V KVRD+MK  LD +RA+     +L NAC +A+ RD  F  TQ QLD+ +R  LD+++  AL+SL+ KLAPF EL++ V  RN LKLDYDHY+RKVR+LKEK  +DA+K++NNE KL AAR  + ++T  +YK F YYDA+GG L  PE+E FK AQ+ F+ AAL  V +
Sbjct:   31 NDNSGAGIKGKMAVNRRRFNEKLGQKMGKEGTDDADFEDRHRATQDLHFKVCKVRDSMKALLDATRAMSQRAVDLSNACGDADARDQDFITTQLQLDQAMRSMLDDSVGKALDSLDRKLAPFKELDERVKTRNNLKLDYDHYVRKVRELKEKSGADASKIANNEMKLEAARVAVHKATLSVYKAFNYYDAVGGRLVAPEVEAFKAAQRAFYMAALNCVKD 250
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BLAST of mRNA_H-paniculata_contig3198.8605.1 vs. uniprot
Match: A0A6G0WWC6_9STRA (BAR domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWC6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.320e-9
Identity = 61/240 (25.42%), Postives = 114/240 (47.50%), Query Frame = 1 
Query:   28 GIIDKFSTSRRRLKENLAQKTGK-EVADNSEFQERALKVENLKEQVTKVRDAMKRQLDCSRALCLACAELGNACS----EANV-RDV-------------------QFQNTQYQLDEDIRKKLDEAI-VTALESLESKLAPFGELEKMVTNRNRLKLDYDHYLRKVRDLKEKPASDAAKLSNNEAKLNAARQRLQESTSRLYKGFGYYDAIGGTLCQPEIEMFKKAQQQFFAAALEAVSN 669
            G++DK  +++RR  +    K GK E +D+ E+Q+       L+++  ++ D ++  L   ++       LG  C+    + NV RD                    +F  +  ++D   R+     +  T + ++++KL      +K + +R RLKLDYD  +RK+R  +E    +AA +   + KL AA+ +L EST+ +       +   GT+ Q E++ F++ Q QFF   + A + 
Sbjct:   15 GLMDKIRSAKRRFIQKALTKIGKAECSDDHEYQQ-------LRDRQLELIDTVEHMLTHMKSFVTTLVSLGYGCTLLGEDMNVIRDNNAVKSPSYGVKPLNDCASNEFSQSMNRIDNAARELAASMLSTTVVANMQTKLDELHGFKKELEHRERLKLDYDSAVRKLRHAREH--REAADVLRRDQKLQAAQAKLAESTALMVAKMKECEGTRGTMLQREVDDFRQMQAQFFQLCVSAFTG 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3198.8605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF98_ECTSI3.870e-10975.00SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YV50_9STRA4.950e-6150.45SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6G0WWC6_9STRA2.320e-925.42BAR domain-containing protein n=1 Tax=Aphanomyces ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3198contigH-paniculata_contig3198:301..3340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue1.6e-88
Seed eggNOG ortholog2880.D8LF98
KEGG koko:K10356,ko:K12562,ko:K21421
KEGG TC5.B.1.1.1
KEGG Pathwayko04066,ko04144,ko04145,ko04216,ko04217,ko04621,ko04666,ko04670,ko04933,ko05140,map04066,map04144,map04145,map04216,map04217,map04621,map04666,map04670,map04933,map05140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0162@2759
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-01_004150.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036,ko04131,ko04147,ko04812
Exons3
Model size684
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3198.8605.1prot_H-paniculata_contig3198.8605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3198 301..3334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.6073227-CDS-H-paniculata_contig3198:300..5401622929984.6073227-CDS-H-paniculata_contig3198:300..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 301..540 -
1691481098.1099818-CDS-H-paniculata_contig3198:300..5401691481098.1099818-CDS-H-paniculata_contig3198:300..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 301..540 -
1622929984.6228747-CDS-H-paniculata_contig3198:1604..18891622929984.6228747-CDS-H-paniculata_contig3198:1604..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 1605..1889 -
1691481098.1235094-CDS-H-paniculata_contig3198:1604..18891691481098.1235094-CDS-H-paniculata_contig3198:1604..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 1605..1889 -
1622929984.6446624-CDS-H-paniculata_contig3198:3181..33341622929984.6446624-CDS-H-paniculata_contig3198:3181..3334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 3182..3334 -
1691481098.1311529-CDS-H-paniculata_contig3198:3181..33341691481098.1311529-CDS-H-paniculata_contig3198:3181..3334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3198 3182..3334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.6611505-UTR-H-paniculata_contig3198:3334..33401622929984.6611505-UTR-H-paniculata_contig3198:3334..3340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3198 3335..3340 -
1691481098.138733-UTR-H-paniculata_contig3198:3334..33401691481098.138733-UTR-H-paniculata_contig3198:3334..3340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3198 3335..3340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3198.8605.1

>prot_H-paniculata_contig3198.8605.1 ID=prot_H-paniculata_contig3198.8605.1|Name=mRNA_H-paniculata_contig3198.8605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MDNSNKGGIIDKFSTSRRRLKENLAQKTGKEVADNSEFQERALKVENLKE
QVTKVRDAMKRQLDCSRALCLACAELGNACSEANVRDVQFQNTQYQLDED
IRKKLDEAIVTALESLESKLAPFGELEKMVTNRNRLKLDYDHYLRKVRDL
KEKPASDAAKLSNNEAKLNAARQRLQESTSRLYKGFGYYDAIGGTLCQPE
IEMFKKAQQQFFAAALEAVSNTFFF*
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mRNA from alignment at H-paniculata_contig3198:301..3340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3198.8605.1 ID=mRNA_H-paniculata_contig3198.8605.1|Name=mRNA_H-paniculata_contig3198.8605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3040bp|location=Sequence derived from alignment at H-paniculata_contig3198:301..3340- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCATGGACAACTCCAACAAGGGCGGGATCATCGACAAATTTAGCAC
CAGTCGTCGACGACTAAAGGAGAACCTCGCTCAGAAAACGGGGAAGGAGG
TAGCCGATAACTCCGAGTTCCAGGAGCGGGCGCTAAAAGTGGAAAATCTG
AAGGAACAGGTAACATGACCTCCATTATACCACGGGGGTGTCTGTCTGTC
TCTGAGTCAGTCGTGGTTGCTCTTTTTTCACCTGATAAACACAAAAAAAT
TCAAGTGATTCGCCGTTAAGGGGTCAATTTAGACAAGTTACTGTGTGGCA
GGCACAAGCAGAGAGCTGCTCTCTCCATCTCTCTCTCTACACCTTGTGGT
TTTCTTGGAGCTCTTACGCACGCACAGCTTAGTAGTGCGTCTTATATGCA
ATGATGCGTTGTCGGCATGTGTGGTGTCCTCCTCCCCATAAGATGGAATT
ATTGCCATGACCCAAAAGTATTACGGCTCACTGCGGTCGAAGTCGCTCGG
CACACCCTCATGCAGATCCGTTTTTCAGATTTGACTAAAAGTTCGAAGTT
TCAACAGCTGTTTGGAAATGTCCATCATCATCACCTCTTCTCATATAGCT
TTTAAAAAATGTCTTGCCACAGGCAGACAGTTGGCGGGTTTGTGCGTGCT
GAAACGGATAAAAATAACCGGGGGAGTGAGTGCAAGTGCGTAGAGTTGGG
TTTAGGGACGATCGTAAAAATGTATAGCCTAGTAGCCGTAATATCCAAAC
AGTCCGATATTGTGCCGGCTACAATGGAAACTCCACCTTTTTCCTCGTGG
AGCCGGGAAACTTGGCAGCTGGGCGCAAGCCATGTAGTCTCCTTGCGGCG
CGAACGGTCACGTTAACCTTTTGGGAGATCATACCCCAGAAATCTGTCTT
GTATCTACTGCTTGGCCATTTTTTTCCTGCAACTATGCGTTAGTGTGCGG
AGAAATAGCAACAGAGGGACGATTGTACAAGCGAGGGAGTGATCTCTTGT
CCTTTCTGATAATAGTGTTGGTTGATTCGCGCTGGTCTTGCGCACTGAAT
GGGGTTAATGACGTTTGGCTTTTCCCCCCTCCATATGAGACATTATAAAA
ACACGTGATAAATTCTCGAGCTTTTGGGGACTCCTCGTAATATGATCTAA
TCTCTCGACCTTTTCGCCCCAATACAGAAAAAAAAAAAAAAAATGTACAA
TGGCTATCGACGTTCGTGCTGTGCAAAGGTAAACAATGAGGTTTCATGGA
ATTTAGGTAAAGAACCTTACGCCGCATAATAGTTGCGATCACGACACCGA
GAATTGTGAGTGTCTCACGGGGTTCAAAATAGCCAAACAAGTCGAAGCGA
CTACTACCCGCTCTCGCCCGCGCTCCTTCTCTTCCTCCTCTCGCCTCTGC
TTTGGTGTGCTGGCCTTGTGGCGAAACCGACGTCGCCGGCATGAAACAAA
GGTGACGAAAGTTCGGGATGCGATGAAGCGTCAGCTGGATTGCTCGCGCG
CGTTGTGCCTGGCCTGCGCCGAGCTGGGCAACGCTTGCTCCGAGGCAAAC
GTGAGGGATGTGCAGTTCCAGAACACCCAGTATCAGCTCGACGAAGACAT
CAGGAAGAAGCTGGACGAGGCCATCGTCACGGCGCTGGAGTCGCTGGAGT
CGAAGCTCGCTCCGTTCGGGGAGCTCGAGAAGATGGTGACGAACAGGAAC
AGGCTCAAGCTTGACTACGACCACTACCTCCGTAAGGTGGGCGCAGAAGA
CGTAGGAACCGACTGACTGACTGAATGACTGATTGAGGCCGTGTTTTCAT
AGGTGCAAAGAAACAATTGACGAAAACAAAAACGAAAAAAACGAAAATGT
CACTGACTGTAGTCGGTCGGTCTGCCGATATGTATAGATATGAAACGAGT
TCATTTTCAACCCTTATGTGTACACCTGCCGATGAAATAATAACAGAATT
CATGTTGCTCGTTTCTCGTTTTTTGTGTGTATGTGTGTTGTTTTTGTGAA
TCGTTCCTGTCGTCACATGGCTGACCTGATGATTTAACTGACTGACTGAC
TGGCTGATGGATCGCTTTTGTGTCTTGTTTCGTCCTTCTTTTTGTTTGGA
TCTCTTTTCTCTTAATATGTATCTGTACACGTGCTTTGTACAGTTGCAAT
CCGCTAACTCTTGTTGCGAGGGAAGCTCACCACCTCAAACCCTCACCTCA
TTGTATAGCTTCGCCCTAAAGGGAGACCTCAATTCACGTACCCCTTTTTT
TAACAAGTTTTAATCTCATTTAAGAAAATAGTCTTTGAGAGGAATCTGTG
GCTGCTCCAGAAGCATCAAACCGCGTTGTGTATTTCTTTTGGGCGTCGGT
AGGCCTGCTATTTGTCGTAATGCAGCTTTTCCCATAAAATAAAAAATGAA
GAAAATGACTCCTTAACCAGCAGACGTTACGCCGCATCATGTTGAAATGA
GCCGACATTCAGGGTGTTGGGAAATTAGTTTCGGGCGCACAGTTTTTTTT
GGTTTTTTTTTCATGAGAAATGAACAAAATGAGCCTCTGTGTTCCTTTAC
TGGCTGATTTTTGAGTAACGGGACCCGCAAGATTAGCTTTTGCCCTCTTT
TTTGTTTTGTTTCGAAGTTGAGATTGAACTTTCGAAACCCGACCGTGTGT
GTTTTACGGCCGTTGGACGGCGGCGGCTGACTGTGTCATGCCTAGGCACC
ATCATATCCACGCATCGAAGGAGTGTGTTTGTTTTTTTGTATAAAGTTTA
TGACACTTTTTGTAAATCGTTCCCTTTCCTCACTTGAACCATAAAAAAAG
GTGCGAGATCTCAAGGAAAAACCGGCGTCTGATGCAGCCAAGCTGTCCAA
CAACGAGGCGAAGCTGAATGCGGCGCGGCAGCGCCTGCAGGAGTCCACCA
GTCGCCTGTACAAGGGCTTCGGTTACTACGACGCGATCGGGGGAACGCTG
TGCCAACCGGAGATTGAGATGTTCAAGAAGGCGCAGCAGCAGTTTTTCGC
CGCGGCGCTGGAGGCGGTGAGTAATACTTTTTTTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3198:301..3340-

>mRNA_H-paniculata_contig3198.8605.1 ID=mRNA_H-paniculata_contig3198.8605.1|Name=mRNA_H-paniculata_contig3198.8605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig3198:301..3340- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAACTCCAACAAGGGCGGGATCATCGACAAATTTAGCACCAGTCG
TCGACGACTAAAGGAGAACCTCGCTCAGAAAACGGGGAAGGAGGTAGCCG
ATAACTCCGAGTTCCAGGAGCGGGCGCTAAAAGTGGAAAATCTGAAGGAA
CAGATGGACAACTCCAACAAGGGCGGGATCATCGACAAATTTAGCACCAG
TCGTCGACGACTAAAGGAGAACCTCGCTCAGAAAACGGGGAAGGAGGTAG
CCGATAACTCCGAGTTCCAGGAGCGGGCGCTAAAAGTGGAAAATCTGAAG
GAACAGGTGACGAAAGTTCGGGATGCGATGAAGCGTCAGCTGGATTGCTC
GCGCGCGTTGTGCCTGGCCTGCGCCGAGCTGGGCAACGCTTGCTCCGAGG
CAAACGTGAGGGATGTGCAGTTCCAGAACACCCAGTATCAGCTCGACGAA
GACATCAGGAAGAAGCTGGACGAGGCCATCGTCACGGCGCTGGAGTCGCT
GGAGTCGAAGCTCGCTCCGTTCGGGGAGCTCGAGAAGATGGTGACGAACA
GGAACAGGCTCAAGCTTGACTACGACCACTACCTCCGTAAGGTGACGAAA
GTTCGGGATGCGATGAAGCGTCAGCTGGATTGCTCGCGCGCGTTGTGCCT
GGCCTGCGCCGAGCTGGGCAACGCTTGCTCCGAGGCAAACGTGAGGGATG
TGCAGTTCCAGAACACCCAGTATCAGCTCGACGAAGACATCAGGAAGAAG
CTGGACGAGGCCATCGTCACGGCGCTGGAGTCGCTGGAGTCGAAGCTCGC
TCCGTTCGGGGAGCTCGAGAAGATGGTGACGAACAGGAACAGGCTCAAGC
TTGACTACGACCACTACCTCCGTAAGGTGCGAGATCTCAAGGAAAAACCG
GCGTCTGATGCAGCCAAGCTGTCCAACAACGAGGCGAAGCTGAATGCGGC
GCGGCAGCGCCTGCAGGAGTCCACCAGTCGCCTGTACAAGGGCTTCGGTT
ACTACGACGCGATCGGGGGAACGCTGTGCCAACCGGAGATTGAGATGTTC
AAGAAGGCGCAGCAGCAGTTTTTCGCCGCGGCGCTGGAGGCGGTGAGTAA
TACTTTTTTTTTTTAAGTGCGAGATCTCAAGGAAAAACCGGCGTCTGATG
CAGCCAAGCTGTCCAACAACGAGGCGAAGCTGAATGCGGCGCGGCAGCGC
CTGCAGGAGTCCACCAGTCGCCTGTACAAGGGCTTCGGTTACTACGACGC
GATCGGGGGAACGCTGTGCCAACCGGAGATTGAGATGTTCAAGAAGGCGC
AGCAGCAGTTTTTCGCCGCGGCGCTGGAGGCGGTGAGTAATACTTTTTTT
TTTTAA
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