mRNA_H-paniculata_contig11334.860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11334.860.1
Unique NamemRNA_H-paniculata_contig11334.860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11334.860.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.890e-21
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:   61 SLTNMNEMCRKLTAQVDRQRKSGWMPKI-GGGFKPYNHNAPDLSLDLAAVDGSLSERDMAHAGCHCFRGSGTPEYAERVHRFARPAVGLANRSGEVRDIEDLKAFGRDP 384
            S ++M E C+ L ++ DRQRK      + GGG  PY+ +APDL+LDLA ++G L+E++  HA C  +R    P+ A   H FARP VGLA        IEDL+AF  +P
Sbjct:   65 SNSSMREFCQALRSKADRQRKHNKFLNLPGGGRVPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVARAAHEFARPRVGLAGGHDGTHAIEDLRAFCGNP 173
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BLAST of mRNA_H-paniculata_contig11334.860.1 vs. uniprot
Match: D8LEJ1_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-17
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   67 TNMNEMCRKLTAQVDRQRKSGWMPKI-GGGFKPYNHNAPDLSLDLAAVDGSLSERDMAHAGCHCFRGSGTPEYAERVHRFARPAVGLAN-RSGEVR 348
            ++M E C+ L ++VDRQRK      + GGG  PY+ +APDL+LDLA ++G L+E++  HA C  +R    P+     H FARP VGLA    G VR
Sbjct:  187 SSMQESCQALRSKVDRQRKHNKFLNLPGGGRVPYDQDAPDLTLDLANIEGRLTEKEKEHAACPFYRSMSAPKVTRAAHEFARPRVGLAGGHDGVVR 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11334.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZN2_9PHAE7.890e-2144.04Helicase ATP-binding domain-containing protein n=1... [more]
D8LEJ1_ECTSI1.410e-1744.79Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11334contigH-paniculata_contig11334:147..5349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog2880.D8LEJ1
KEGG koko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons4
Model size471
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11334.860.1prot_H-paniculata_contig11334.860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11334 147..5349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928841.6329596-CDS-H-paniculata_contig11334:146..2511622928841.6329596-CDS-H-paniculata_contig11334:146..251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 147..251 +
1691480640.9453936-CDS-H-paniculata_contig11334:146..2511691480640.9453936-CDS-H-paniculata_contig11334:146..251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 147..251 +
1622928841.6469646-CDS-H-paniculata_contig11334:1874..19841622928841.6469646-CDS-H-paniculata_contig11334:1874..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 1875..1984 +
1691480640.9626174-CDS-H-paniculata_contig11334:1874..19841691480640.9626174-CDS-H-paniculata_contig11334:1874..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 1875..1984 +
1622928841.6573477-CDS-H-paniculata_contig11334:2706..28311622928841.6573477-CDS-H-paniculata_contig11334:2706..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 2707..2831 +
1691480640.971939-CDS-H-paniculata_contig11334:2706..28311691480640.971939-CDS-H-paniculata_contig11334:2706..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 2707..2831 +
1622928841.6717114-CDS-H-paniculata_contig11334:5218..53491622928841.6717114-CDS-H-paniculata_contig11334:5218..5349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 5219..5349 +
1691480640.9805694-CDS-H-paniculata_contig11334:5218..53491691480640.9805694-CDS-H-paniculata_contig11334:5218..5349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11334 5219..5349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11334.860.1

>prot_H-paniculata_contig11334.860.1 ID=prot_H-paniculata_contig11334.860.1|Name=mRNA_H-paniculata_contig11334.860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
RSRGGASPTRRQQQQRPPARSLTNMNEMCRKLTAQVDRQRKSGWMPKIGG
GFKPYNHNAPDLSLDLAAVDGSLSERDMAHAGCHCFRGSGTPEYAERVHR
FARPAVGLANRSGEVRDIEDLKAFGRDPCGIMENNNNNNDDDDDGSATRT
SAGTAGA
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mRNA from alignment at H-paniculata_contig11334:147..5349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11334.860.1 ID=mRNA_H-paniculata_contig11334.860.1|Name=mRNA_H-paniculata_contig11334.860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5203bp|location=Sequence derived from alignment at H-paniculata_contig11334:147..5349+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTCGGGGAGGGGCATCCCCTACGCGGCGGCAGCAGCAACAACGGCC
ACCTGCGAGATCCCTGACAAACATGAACGAGATGTGTCGCAAGCTGACGG
CGCAGGTACGCTCGGCGAGAAAGCAGAAAAGACGGTGGTGCTGTTTCTTG
TGAGCGGCTTTTTGACAGCAGCATTCTCTCTTCTTTCTTTCAACATCAAA
CGGGAAGTTTTTGACATGCGATCTGACGGGGGGGGGGAGGAGGGGTCGAA
ATTGAATTATTTGAATGACCATAATATTCACTGGTATCAAACACTAGCTA
ACGTGCTTCTGTTTTCCTTTGGGTGTTTTTTTCTTCTTATTCCCGATAAC
ACGCTGATATCAAATCGGAAGAATCGAAAAAACTTGAATAATTAGGGTTA
AGGAAAGCTGTAGCTTAAAAAAATATCAATTTTCTTGTGTTCTGGAATTC
CGAAAAGACACAAGGTGGAAAACAGAAAAGAGCTCTGGAAAAGAATTCTG
GAAAGGAACAAAAAGGGCCAAAACGAGGACATAAACAGCAACGTCTAGAA
CGACTCTGAGTAGAATATCTGGGTTTACGTATATACTATCTCTGTCCTAT
AATAAGTCTGGCTTGTAACGGTGTTTTTTTTGTAAATATCTTTTGCAATT
TTTGGTGTTTCGTGAAAAATAAAGCAAACGATTGGAGAGCATACGCGTTC
AACTTGCATGTAGATATCTTCAAAAATGTTTTTTGGCTTCGAAATGAATT
AGAACCGGGTATTTTTGAACACGTCAATTTTTTTCGAAAATGGCACATCT
TGCAAAAATAGTTGGATAGGCCGAAATTGGCTGAAAATCATGCTTAGTGG
TTGATAAAGCCCCAAGGAGACCTTCGATTAAGAATTGTTTGTTGCGTTGT
ATCCCTTGGCGTTTCATACTACGTAGTACAATAAATCCATTTTCATCACT
GCTATCCTCCCCATCAATCCACCAATTGAAGGCCGCTTCGCAAGCGGCTC
AATCAATCGGGATCAAGTGATCCAAACGTTTTTTCATGCTGCCTTTTCCT
GCTCCCGGTATGCCCAATGTCTAAATCGTTTCCCCGCAGCACTTTCAACA
TTTGGTTGTCCCGCTTCAAAAGGCTCTACCAAGCCATCTCTAGAGTATCC
GCGTCATACTGGCCGTACATGAACATCACTTTGGGAATGTGACTCTTGTG
CTGCATCTTGATGGAGCCCTCCCGCTCCTCCCCGGACAATCTTTCAGAAT
TCTATTAGATTTGGAAGCAAATCGGAGTATGATATTCTGAAAAAAATCCG
TCAGTTTGGTATGATTGGGGGGCTTCGTTTGCGCTATTGCTCGTTGGAAA
CTCGATGTACATGTGAAAAAAAAAAAAGGCTCGCGAAACTGCGATTTTCA
GCCGATTTCCTTCCGCCTATTCGGGTGTTATTGCAAAATCTGCCATTTCC
GAAGAAAAGACAATCGTTTTGAGACACCACATCGAATTCAAAAGCAATTT
TGAAGATACCACATGAACGTTGAACGTGTAGGCTTTTCGAATGATGTGCT
TTGTTTTTCACGAAACCCCAAATTGCACAAGATATTTACAAATCTCGTTA
TAAGCCAAACATATGAGACAGAGGTAGCATATATATATATATACCATGAC
TCCTGGCTTACCTCCCGTGATAATATACACACGGTAAGATATATACACGC
CGCCTTACCATCAACGGATTACGTGCAGGTGGATCGGCAGCGGAAGTCAG
GGTGGATGCCCAAGATCGGTGGAGGATTCAAGCCATATAACCACAACGCG
CCGGATTTATCGTTGGACCTGGCTGCGGTAGACGGCAGGCAAGAGGAGAA
TAGATGATCGAACGGGGGGGGCACGGCTGGAAAAACGCGAAGACGAATCA
ACCGTGCGGGGGACGTGCCTTGCAAAAATCAAACCTATGGTGTTCTCGCG
CGTGCAGCACCGTTTTTTTCTTAATAAACAGAGTAAAACAGGAACAGCAC
AGAAAGCGTTTTTGTATTCCCGTTTTTTTTTCATCTTGTCTTTCCGCTTC
CAACGTTGTCGTTGTCCTGTATGGGGGGGGGGGGTGTTTTCGCGACCCGG
CCAGTTGCGTGTACTTTAACTTTAACTATATATCCTCTGTATGTATGTGT
GTCTGCGTGCGGCTTCCTCCTCCTCTTCGTTTGTTTTCCCCTCTAATCTT
TGGCCTTGATCATTTTGTGCCCAAATTTTCCTTAACTTTTCGCCTCGCCG
TTTCTTCGACTGGGCAGGCAAATACAATGGGCAATAATATGCTCAGCGAG
TGCTTCTTCGCCCCGTCCGGAACCCCTACCTCATTCCCCCCTCCCATCCC
TTACATGTCATGATCTAATTTTGTTGGTAAATGTGCACAACTGAATATTG
ATTATCAGCTGCATAGTCTCAACATGGTTACATTGAAGTTATCACACGAG
CGTTAGAGCTAGAGTTCTTATTAACGGTGGTAAGTGGGTTGGTTGACTCC
CGAATGAGAATTCCCCCCACCCCTCGTCACATGCACACATATTCCCCTCG
CCATTTGCAGCTTATCGGAACGGGACATGGCGCACGCGGGATGCCATTGT
TTTCGCGGCAGCGGGACGCCGGAGTATGCCGAACGCGTGCACAGGTTCGC
GCGTCCGGCAGTTGGATTGGCGAACAGATCGGGTGGTGAGGTTTGGTGTT
GCTCTATCGCTCGTACGTGTGTGTACACGTACACCCCCGTAGCGCAGATC
GTGTAGTAGTTAAAGTGGTACATATACAATCAAGTCAAAGAGGGAAGGCC
ACTGCATGTACGATGTATGTGACGGATATTCTACGCAGTGTATCATTTAC
TGGGTTGTGTTCCAACTATCGGGTGTTTTTTGTCTGCGGATGGGTGTGGT
TGACTTCCGATTGTGTTTTGTGAGTGAACCGTAAGGCATGGTATTTAATT
TCCTATGGTAAAATGGGTTGGGCCCAGGGCTGAAGGGCAAATTACCGGCG
ATGTGTGACTGCTGGATTGGAGTCACCCTACGATATGTGTCACTGGATAG
AGGGCGGGATACGTTTGGAGCATGACCACTATCCTGAAAGTGACATTTGG
TACTACCCAGTGAGATATGTCATGAGATAGGGGATAAGGTCATTTTGAAG
TATGACCATTATCCTGAGAGTGGACTGCTATATAGTCCTGCCCGATGATA
TCTGCCATTCGATATGGAGTAGGGTCACTTTTGAAGCATGACCACTATCC
TGAGTGAGGGTGGGGTGTTATTCGGTACTACCCAACGATATTTGTCATTA
GGTAGGGGGTAGGGTTACTTTTGGAGCACGATCACTATCCTGAAAGTCCG
CTACCCAAACACGTTGACCGCATTAGCTCCCTGTCGTTTTCAGGTTTTAT
TATTCCAACGTGTCGGAGACCATCTTCTTGGTTTCACGAATAATTTCCGA
ACCCCCAAAGAGATGTGCATTTCCTTCTGGACAAATAAAGGGTACATATG
TACCTCCTATCGTATGGGATGAGACACTGGAAAGTCCACAGCCGGCCGGT
ACATATATATGTGCACGAAGGCCAAACCAACCCGCGCAGTCATGAAGAAT
GACACGCTTAGAAAACACACAGCGCTGAGATTTGGGGGGCTTTTGATCAT
CATCCACCGTTAGTCGCCTGCCACAATACACCGCTATTAATATCTCCTCC
CAAGAGTATTAAGTACAAGCTGGACCGACCAAGATACAGTTAAAACGGTA
GAATCGGGCTTCTCAGCTCAACTTATCGACTTTGGTCCTGATATCTTGAC
ACGTGATTTGCAGTTCACTCGCTGAGACATTCGAGCAGGGTCATTGTTTT
TGTTTTTTATATTTACGGCCAAACGAAACACCCATACATGAATCGAACGT
CGGCCATAACTTCACGAAAAAAACAAGATGAAATAATGGCCTTGCTCGAA
TGTCTCGGCGAGTATATTGCAAATCGCGTGTCAATATTTCAGGACAAAAT
TTGATGAATTAAGCTGAGCAGCCCGATTTTTCTACAGCACCTTTTGTGGT
GTACACAGCTATACTGTATGCATATTGTACAATACTGTATTACGATGAGG
AAATTTACGCTGACACTTGCATCGAGATTCAGGCCGGTGGGTAAGATACG
TTTGGCGGAGGTTTGACGTTGGCAACATGCAGTGTACAATAATAGCCCCT
TCGAAGTGAAATCCACGCCATTGTTGTATCATATGAAATTGAACTTTGAT
TTTCACAGTCAATATGTATGGCGTTGTCCTTCCGGGTACCAACTTGTACA
AATACTGGGACAATTAATCTACAAATTGTCAGTGTCCGATATTCTGCCAA
TGCAGCACACGTTTAATCTCAGCTTCAACCGATACGTACTATTGGCCTCG
TCGTGCACAACCGTAAGGACTGTGACCCTCTGCCACTGCTGACCCACTGG
TACGCTCGTAGCCATGTCGCAGCGGGTAGGCTTGGGGTGTCACTGATCCG
GGCACTTTTGTGCTGCATGATTTTATTTGCGTCGCAAAAGAAAACGGCGT
TAACACCAACATCCTTACACGCTAATTGGGCAGCTAACCTCAAGTTTGTA
AAACCAGTACTAATCGACTAGCCATGTGGCTCTGCACATGCACGTTGATT
GGCTGATTACAGCAAGACTTTCTTTTTGAGATGACTCGCAGTAGTTGGGA
AAATATGATCATCCGAAACAATATGGGTTTCTTGGTCGATCCAGCTGGTA
CATGAAAGAGAGAGAGAGAGAGAGACGCATGTGCGACAGCGCTTGAAGCG
TTGGTCTCTCTGTCTGCCCCCCGGGGTCTTACCTCCTTTCTCCACGTTGG
AGACGAGAGTGTTTGAAGTTAAAGGTTCGCAAGGTTGGACACAGCGGAGG
TAGCGATGATGCATCCCCCTGCCTCGTGAGATCGTTCACTCCCGCAACCC
CACTTTCACATATTTGTCTCGTAAATTGTTGAACGAAGAAGTACTGCCTG
TCTGTATCTAGCCCGCGCGCCCCCGCCGCCTCTCAAACGCACACACTCGT
AACTTCCTGCAAAATACAACAGAAGTACGGGATATCGAAGACTTGAAAGC
CTTCGGCCGAGACCCGTGTGGTATTATGGAAAATAACAACAACAACAACG
ACGACGACGACGACGGTTCAGCCACAAGAACAAGCGCTGGGACCGCGGGG
GCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11334:147..5349+

>mRNA_H-paniculata_contig11334.860.1 ID=mRNA_H-paniculata_contig11334.860.1|Name=mRNA_H-paniculata_contig11334.860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig11334:147..5349+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTCGGGGAGGGGCATCCCCTACGCGGCGGCAGCAGCAACAACGGCC
ACCTGCGAGATCCCTGACAAACATGAACGAGATGTGTCGCAAGCTGACGG
CGCAGAGGAGTCGGGGAGGGGCATCCCCTACGCGGCGGCAGCAGCAACAA
CGGCCACCTGCGAGATCCCTGACAAACATGAACGAGATGTGTCGCAAGCT
GACGGCGCAGGTGGATCGGCAGCGGAAGTCAGGGTGGATGCCCAAGATCG
GTGGAGGATTCAAGCCATATAACCACAACGCGCCGGATTTATCGTTGGAC
CTGGCTGCGGTAGACGGCAGGTGGATCGGCAGCGGAAGTCAGGGTGGATG
CCCAAGATCGGTGGAGGATTCAAGCCATATAACCACAACGCGCCGGATTT
ATCGTTGGACCTGGCTGCGGTAGACGGCAGCTTATCGGAACGGGACATGG
CGCACGCGGGATGCCATTGTTTTCGCGGCAGCGGGACGCCGGAGTATGCC
GAACGCGTGCACAGGTTCGCGCGTCCGGCAGTTGGATTGGCGAACAGATC
GGGTGCTTATCGGAACGGGACATGGCGCACGCGGGATGCCATTGTTTTCG
CGGCAGCGGGACGCCGGAGTATGCCGAACGCGTGCACAGGTTCGCGCGTC
CGGCAGTTGGATTGGCGAACAGATCGGGTGAAGTACGGGATATCGAAGAC
TTGAAAGCCTTCGGCCGAGACCCGTGTGGTATTATGGAAAATAACAACAA
CAACAACGACGACGACGACGACGGTTCAGCCACAAGAACAAGCGCTGGGA
CCGCGGGGGCGAAGTACGGGATATCGAAGACTTGAAAGCCTTCGGCCGAG
ACCCGTGTGGTATTATGGAAAATAACAACAACAACAACGACGACGACGAC
GACGGTTCAGCCACAAGAACAAGCGCTGGGACCGCGGGGGCG
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