mRNA_H-paniculata_contig3193.8598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3193.8598.1
Unique NamemRNA_H-paniculata_contig3193.8598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3193.8598.1 vs. uniprot
Match: D7G809_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G809_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.070e-39
Identity = 68/123 (55.28%), Postives = 90/123 (73.17%), Query Frame = 3 
Query:  192 MPEKKHYSYTNLDDTPKHGEVIESSYLIAERGPKSTWTRITEVLILLATVGACAYLLIFLFHSGNNHQAR--HKAPAKPSRPVGASSSSVHDSALCSDNAACMEKSFQGLCCPDAENKYLPCC 554
            MP KK+YSYTNL DTP+HGE+IESSYL+AE+GPKS WT++ E+++L+AT+G CAYL++FLFH  N+H +     + + P  PVGASSS+  D A C+ N+ C E    G CCP A+  YL CC
Sbjct:    1 MPPKKNYSYTNLADTPQHGEIIESSYLLAEKGPKSIWTKVLEMVVLVATIGGCAYLVVFLFHHANHHDSATAKDSASHPHPPVGASSSTSQDPASCNSNSKCAELELNGFCCPTAKGDYLACC 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3193.8598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G809_ECTSI2.070e-3955.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3193contigH-paniculata_contig3193:5868..12626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009730.1
Exons4
Model size2541
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3193.8598.1prot_H-paniculata_contig3193.8598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3193 6667..10660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.7618997-UTR-H-paniculata_contig3193:5867..59781622929983.7618997-UTR-H-paniculata_contig3193:5867..5978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 5868..5978 +
1691481097.6389859-UTR-H-paniculata_contig3193:5867..59781691481097.6389859-UTR-H-paniculata_contig3193:5867..5978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 5868..5978 +
1622929983.7737508-UTR-H-paniculata_contig3193:6589..66661622929983.7737508-UTR-H-paniculata_contig3193:6589..6666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 6590..6666 +
1691481097.649574-UTR-H-paniculata_contig3193:6589..66661691481097.649574-UTR-H-paniculata_contig3193:6589..6666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 6590..6666 +
1622929983.817869-UTR-H-paniculata_contig3193:10660..126261622929983.817869-UTR-H-paniculata_contig3193:10660..12626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 10661..12626 +
1691481097.699302-UTR-H-paniculata_contig3193:10660..126261691481097.699302-UTR-H-paniculata_contig3193:10660..12626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3193 10661..12626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.784933-CDS-H-paniculata_contig3193:6666..67201622929983.784933-CDS-H-paniculata_contig3193:6666..6720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 6667..6720 +
1691481097.6585035-CDS-H-paniculata_contig3193:6666..67201691481097.6585035-CDS-H-paniculata_contig3193:6666..6720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 6667..6720 +
1622929983.7948022-CDS-H-paniculata_contig3193:9914..101671622929983.7948022-CDS-H-paniculata_contig3193:9914..10167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 9915..10167 +
1691481097.6766186-CDS-H-paniculata_contig3193:9914..101671691481097.6766186-CDS-H-paniculata_contig3193:9914..10167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 9915..10167 +
1622929983.8083801-CDS-H-paniculata_contig3193:10580..106601622929983.8083801-CDS-H-paniculata_contig3193:10580..10660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 10581..10660 +
1691481097.6880238-CDS-H-paniculata_contig3193:10580..106601691481097.6880238-CDS-H-paniculata_contig3193:10580..10660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3193 10581..10660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3193.8598.1

>prot_H-paniculata_contig3193.8598.1 ID=prot_H-paniculata_contig3193.8598.1|Name=mRNA_H-paniculata_contig3193.8598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MMPEKKHYSYTNLDDTPKHGEVIESSYLIAERGPKSTWTRITEVLILLAT
VGACAYLLIFLFHSGNNHQARHKAPAKPSRPVGASSSSVHDSALCSDNAA
CMEKSFQGLCCPDAENKYLPCCPSQPGH*
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mRNA from alignment at H-paniculata_contig3193:5868..12626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3193.8598.1 ID=mRNA_H-paniculata_contig3193.8598.1|Name=mRNA_H-paniculata_contig3193.8598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6759bp|location=Sequence derived from alignment at H-paniculata_contig3193:5868..12626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGGGTCTATAACTTCAGCCGAGTAGGCCATGAGACTGCAACATAGACC
ACGACTGTTCTTTGTGTTGTGCAACAACAGCCAAGAACACCCGCAACTTT
CCCCCACCGAGGTACGAAGAGAACTCATTGCTTCCACTTCGCCTTCTTCT
TATTTTCCTCTGCGGAAGCGACTAGCTAGTTAGCCGTTTAGCTTAGTCCC
GTTATTGTTCAGAAGGGCTGCGACTCTTGTTGCCTGGTCTCTCAACCATG
TCGTACTTTCTGTCTTCCAGCCTGTTTCCATAGTAAACACGAAGAGTTGG
TCCCTGTCGTGCAGCTAACAGAGCCGAGGAAAGCTCACAGCGTACCAATA
TGCAGGGCTGACTAGTGACGCGCTTCCGATAATCGCATTTTGTTGGCAGT
TTGCCGGCAAAAAAACAAGCATGATACATTCAATATCTCGCTCACTCTCG
TTTGCGACGTATCTCATGAGGAAAGGAGCAACCATGGAGCGAAATAAATT
GCAACACATAACAGCAGCTTGGAGGAGTATCTTGCCTGGGGTGGTCTGTT
TGGTAGTGGATACAAGAGGTCTGGAAATATGAGATGTAGCCACCTCTCAG
ATACGAGATATCATGCCCTCATCACCCTCTAACTATGGTGCATTATATCC
CATCATGAAAACTTTGTTCTCTTTCCCTCGCTCTCTCCCTCTCTCGCTGA
TGGTAACGCGTGGCACGGGCAGGCAAGCATCTAATCTTTGCACCAGCAGT
TATCTCGCGCTGGGTCTCTGGGAAACTTGTGGCACAGTCTGCAGAAGCCA
TGATGCCAGAGAAGAAGCACTACTCTTACACGAATCTCGATGACACTCCC
AAGGTATGTATGTAGTCATTGAGTATGTATGTATTCATGTTAGATGCATA
TATACACATGATTTATTACTGTATGCAAACATGCAGTGGCACTGCAGACC
ATGTTGAAGCCCATCGATAACACCCTGTCTATCCGCGGTACAGTACAGTA
ACGCTCGGGGAGTGTAACAAGTATAGAATGAGCTCCCGGAAATCGGTCGT
CCCCAAACGGAGTATTAAAAGAACAGATGAAAATAACAATGATCACAACG
CCCCGGGGAATATATATCAACAAGGTGATATCGTGACTTTCATTAGAAAG
CCCTGGGACAAAAGTACTCTTGTACTTGTTATTACATAAGCGAGTATAAA
TATGTCGTACCCATGGACCCCCAGATGACATAGCTTCTGGAACTACGTCC
CGTGGCCGGTCATATCAGCGATACATGTGCATTTCCGGTTGTGAGAAATC
ACCAGTAGGATATTGTTACCGAGGTGCTTTTTCCGCTGCTAGGTTATCAA
TCATGTTCTCTTCTATCGGTCATACTCCAATTACGTTATATATAGTTTTG
TTTTCATGATCTAAGAGAGGCAGAGAGAAATAGAAACAGAAGACATATAC
GAGGACGATGTAACCTAGAGTGTTTGCGCAAAAGGAATCCTATTTGAACA
TTTTGATTCATAGAATCAGAATTTCCGTCTATACGAATTCCTTTCAAATC
CAATGCTGAAAACAAGTTTGCGCCAATCTGATCAATTGATCATTATTTGA
TTGTTCAAAAATCGGGGTATCCCCACTTTACGACTGGGTCCCCACTAGAC
TGTTGTGGGTATCTGGGCGTCAGGCAGGGGCCTTCAAAACATGCACGAGG
CAAAACATATATTGCGCTGTCACCATAGAGACCTCGGAGACCACGATACG
TGTCAGCGGCGGACCAACAGCTTCATCGTCAGTGTCGGCAACGGTGGCTT
CCAGCACGGCGGGCGGCACTGTTGCCCCGCTGGATATAGCAGGCGCCTCC
ACTTCTCCCATCGATGTCGATTCGCCTGCAACCCCGACCGCACAGCCGGC
CGAGCCCGTCTCGGCCACCGCAGCGGGGTCGATAACCTCAACCAGACAGA
CCGCGAACAAAGGGGCTACGTCAAGTGGGATGACGCCATGAACATCATTA
GCGCGCACCGCAAAAACAGCCAAATCTGCACACGCTCCCGGTCGCACAGC
ACCTCACAGCGCCGATTGATCTGCAGTTGATTTGACATTGCGTCGTCCCA
ACCTACTCATCCTTGCGCACCGTGGTCCGCTGCCCAGATGATATATCAAG
ACCGTGCGATGTTGTGTGCTAGTTTGAAACCATTAGTCTACATTCTAGAG
TGTAGTGCGACGGTCATCCGCCAACCATCGGATTGTTTCTCGGGCTGTGT
TGGTTAACCACAATGTATTCCGATCACTTTCCGTAGAGGCTTCACTTTTC
GATTTCAAATCTCGGTTTGGTTATTTCTTTTTTGAAAACCTCGGTCAACA
ATTCTGAAAACAAGAAAAGATCGCGTTCCGTCAATAACGAGAAAATGAAC
AAACAGAAAGTGAAATGGAGCTCCTTTTGCGCAAACACTCTACTGTACGC
ATATGATTCGATACGTTAGTACATAATGCATAATACTTTACACCCGTACA
TACCACCTCTCGTCCTACCTGAATCTGGGAGGGATAGGGGCAGGGGCGAA
ACAAGCCGTCGGTTCCCCCACACAGGCCATACTATAGGAAGTGGTTATGT
ACTCCCTGGGTTATATCATATTATAGCATGGTGATAGCACGCAGTATTTG
TCTCAGACCTACTCTAATAAGTTGCTGGACCTATTCGTGGCTAGTTAATA
CCGTACTTGTCAGGGTTGATTCGCACAGTATCTATTGCCCGTACCAACAA
TTTCAATCTTTCAAACTCGATTTCCTCGAAACTACAGAACGGTTCTCTCG
TAACATAGTCCTGTGACGGCGAATAGTTAGATCCAGGAGAAAGCTAGCTG
ACGGTCCTATGGGCCAAAAGGATTGAATGAGTACAAATGACAGACTGCGG
TGTCACTCATCGAGTTGATCGAGCAGTGACTGCCAGCTGAACACGGGCCA
GCAGAAATTGTATAATTTAGAGTTAGTTGTTCGTTGTGCACAGCGATGAT
GGTAAAAACACAGCGAGAAGGTTTGCTACAGCACCATGCAGTACAGCGAT
GTATTTTCTGTACCTGGCGTGTTACCGCCGTTGCCGGACAATATTTGCAT
ATCGTGGGACAAACTTGGGTAGTTGGCAGCATCACCCAAGAGATCTGTGG
CTTTTGCCGCTCTACAGTGTGGCGTGCTGTTGTGCGTGTTGGTACCCAGC
ACAACAGCAGCAGCAGGCAGCAGCAGCCTGCCCCAGGCCGTGACAAGCGG
GACATGACTGCTAGCGAAAAGCCAGACCACGCGATGCAAAGTTATTTGAT
TCTCAACCACACACACGCGGAATCATATCTATATCTGCAATTCTCCTTTC
CTGAAATCAGTGCTTGCTGGGCAGTCACTGAATCGCACGCGATGAACGAT
GCTATTTCAATTTTTATAGCGTCTAGATCCTTTGGCCAAACACGTCTTGC
TGAGCCACTACACCGTTCCAGCTATGTTAACGCGACGCCCCTTTCGACCC
TTGGTGATGTAGTTTGCTTTTAAGTGTAAACTTGTGGAGTTTGAAGTCAG
CTGCATACATTTCACATGGGTACAATGGAGTTATTGTGTGAGCTGCAGAG
GAATAGTTCGACTTACTGGCAGGGTTGACTTACGAATTAACAATTTGGAT
TAGGGTTTATGTCTATAATTCGTGTGAAAACTGTTTCATGCGCTGTACCT
ACAGTGTACATACGAGTGATACAGTGATACAGTGGTACTCCGTTGTGAAT
TAAGGTTGCAGTAGCCCATGTCGTGCGTGGTCCAAGAGTTGCGTGAAGGC
CCAGTACTTGGTCAAGGTGAAGTCAGAATTTCATGTACAGTAATGAGAAC
AGGACCCTGGTGATTTACCAAGTAGCATACTACCCAGATATTCGTCAAGT
CCAGTAATATTCAACTGGTGGGTATGCGTGGATTTATTGTGGATGAGCCC
TTCGCGAACCCTCCCTCCCCTTCCCCCCCCCCGCCGCCACCGTCTCCGCC
GCCGCTGCCGTCGTTGCCGTCGCTGCCGTCGCTGTAAATGATGGCAGCAC
GGCGAAGTAATCGAATCGTCTTATCTTATCGCCGAAAGGGGTCCAAAGTC
AACATGGACGAGGATAACAGAGGTGCTAATCCTCCTGGCCACTGTCGGCG
CATGTGCCTATCTCTTGATCTTCCTGTTTCACAGTGGAAACAATCATCAA
GCGAGACACAAGGCTCCAGCAAAACCTAGTCGGCCCGTGGGGGCGTCTTC
TTCTAGCGTCCATGACAGCGCGTTGTGCTCGGACAACGCCGCGTGTATGG
GTAAGCACTTGCTTGCTGTGTGCTGTCTGTCTGGTGTGGGAGGGGCGTCG
GCTCCGGACCCCATTTTTTTTCTTTGTGCATTGTAATACAATACGAACGA
ACTCGGTGTTGCGTTGCTGGAGATAAAAACACTACCGAACTGCTGTTGGG
ATTACTTTTTCATGCGGTGTGGTACGTGCTTATGACAGGTGAAGGGATGG
AAAAAAGCGATATCAGTAACTGTGGACTACGTTGTTTCTTAATCCAACGC
GAGAAGGTCTTGGTGGATCAACATTAATACCCCACCCTTCATTGTATATC
TTGCGCATCTTGACTTGACCATTTGTTCACACACACACACACACACACAC
ACACACACATATATAGATATCACCCACGCCCTGCTGTGTTTTATCGTTCG
TTCTGTCCCACAGAGAAATCATTCCAAGGTTTATGCTGTCCCGACGCGGA
AAACAAATATTTGCCGTGCTGCCCTTCACAGCCAGGCCACTGAAGGCGAA
CACATGGGGTCGAGCTATCGTATTGGTTTGCTTCATCACAGAAGGTTGAC
TCGCTCCATGATGCAGGAGACGTCGGCATGGAGGCAAACATTTATAATAA
ATTCATGGTTGGAAGATAACAACACACATGATGTGCAGTGGCAAAAGGCT
GGTTTGTACAGTATTGACGGTAGGCTTTAGCGTTTCGTCGCTGGAGTTAT
AGCCGAATTTTGTTTTTCCTCAGAAAAAATAACATATGCCTTGACCACCT
TACACAGAATGGCGTAGACGGGACCATTTTTTTCTTGCGATTGTCATTGG
ATACGTGATGAAAGCCAGACAGAAGCTGGTGCTCACTATCACTACGCGTA
GCCTCGTTCCTTCCTTGTGTGTACATCACTAGTAAGGGAGGACCATCTAA
CTTCACCGCTCCTATTTGACACATTTTCGGTCAAACGGCGTTTCTGCGGG
TTCGCTGGCCTCCCTAGAGGGAAGAGTGGGGTAAGGAGGGGGCCTAGGCG
ACGGCTCTGAAGCTCACATGATAACTTAATTTTATCCGTGTTGAGTTATT
AACTCCAATTGTTCACATTTATCATCAAAATGATATCAAGGGGTCTAGGC
GGGACTGCTGCGTGGCAGGGTGCAGGTCCCCTGGCTAGGTTTAGTGTTGG
AGCGTCCAACAAACAGGAAATGACTAGTTTAATTGTCTATTCGTTCCCAC
TTGTGGACGTGCAAGAGATTTTTGTCACAGCGTTGGCCGTCGGGGGAGTA
GTTTGGTGGTAATATTGAAGTGCAGAAGGGAGTATTTTGTACGTTGACTC
AACTCGGAAGACACTGTACAGGAAGCAGCTCACCACCGAACTCTACACAG
TCAGCGTTGACTCTGTAGCTCGGTGTTGGATTGTCATCTGTGCCGAAGCT
AATTGCGAGTTCGAATCCCGATGAGCACAGATTTTCTTTGAGTACTTTTG
ATATGGAATACATGCGTGCTTCATCATTTGAAGAGTAGTGCACAGTAAAG
TAGTGTCGACCTCTACTGACTCTAAGGGGGATTTTTTTTGTCATGTTTTG
TCATGTAGTGTACATACATGTGCACCGCTACTATAGATGTTGGCGTTTGG
TTTAGCCCACTGGTATTATTGGCGGCCCAAGTAGCCTGAGGGGTGTTGGA
TATGTATACCGTTGTGTCTCGTTGCTTGAAAGGGAAAAAAAGAAGAGCCC
ATTTATTCGTTTGAAAGTGGCATGTGTTGTTTTTCGCTCGTCTAGTGTCG
TGAGTATTGAATAATACATGTACCGTAGAGATGAACTGTTCTTGCGGGCG
GTGGGGTCTGCTGGCTGCGAAGGTGTGTGCACTTGCACAAGGAGTTGTGT
CTTGATGTGGATACGTGTGACTGTTGGTTGGCTCGGATGTTACCCGTCAG
TGTGTAGGGAATTATTTTTCTCTGTGCTAGGTTGCACTTGGTGTTGTTTA
GTGCCATGTTCCATTGAAGATTGAACTCTCGCTGCTATGACCGTATTTGC
TTTTTTGGCGTGGTATGTTTTTTGCATTATATTTGGATTTGCGTCTGGTT
GGAAATAGGTGACACGCCAACAACTGCGTTCGTACCAAAGAACAAGTGAA
TCCAATACATTTGCAGCGAATGAAAAATGACATCATTCTTACAATGTAGA
GTGGCTGCCAACGTGCGCCTCGCGTCGGATGCTATCATACGTTATATTGT
GGGCAGTTGCTATCTGCCTACTACCGACCAGTCTGTCCTTTTGATGGTAC
ACCGGCAGGCCGCGCTATGGCGGTTGTAGAAGCATCAACCTGCGTAGAAT
ATCATTGGGTGTCTTTGTGTCTCTGTGTGTATATGCCTGGATACCATCCC
CGGGTTTTTTATCATGGTAAGCTGCTCGGTCACATGGACCGAAGCTTGCT
GTCGAGTACCCTACTGACCCAATTTGACTCGCTGGGGCCTGCACAGATAT
AACAGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3193:5868..12626+

>mRNA_H-paniculata_contig3193.8598.1 ID=mRNA_H-paniculata_contig3193.8598.1|Name=mRNA_H-paniculata_contig3193.8598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig3193:5868..12626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCAGAGAAGAAGCACTACTCTTACACGAATCTCGATGACACTCC
CAAGATGATGCCAGAGAAGAAGCACTACTCTTACACGAATCTCGATGACA
CTCCCAAGCACGGCGAAGTAATCGAATCGTCTTATCTTATCGCCGAAAGG
GGTCCAAAGTCAACATGGACGAGGATAACAGAGGTGCTAATCCTCCTGGC
CACTGTCGGCGCATGTGCCTATCTCTTGATCTTCCTGTTTCACAGTGGAA
ACAATCATCAAGCGAGACACAAGGCTCCAGCAAAACCTAGTCGGCCCGTG
GGGGCGTCTTCTTCTAGCGTCCATGACAGCGCGTTGTGCTCGGACAACGC
CGCGTGTATGGCACGGCGAAGTAATCGAATCGTCTTATCTTATCGCCGAA
AGGGGTCCAAAGTCAACATGGACGAGGATAACAGAGGTGCTAATCCTCCT
GGCCACTGTCGGCGCATGTGCCTATCTCTTGATCTTCCTGTTTCACAGTG
GAAACAATCATCAAGCGAGACACAAGGCTCCAGCAAAACCTAGTCGGCCC
GTGGGGGCGTCTTCTTCTAGCGTCCATGACAGCGCGTTGTGCTCGGACAA
CGCCGCGTGTATGGAGAAATCATTCCAAGGTTTATGCTGTCCCGACGCGG
AAAACAAATATTTGCCGTGCTGCCCTTCACAGCCAGGCCACTGAAGAAAT
CATTCCAAGGTTTATGCTGTCCCGACGCGGAAAACAAATATTTGCCGTGC
TGCCCTTCACAGCCAGGCCACTGA
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