mRNA_H-paniculata_contig3190.8591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3190.8591.1
Unique NamemRNA_H-paniculata_contig3190.8591.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A6H5KC35_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC35_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.720e-44
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VDGDCMPT CAFFP+FRQILIRERI+LVHGHQASSVMSHEAILFAKTMGYRV YTDHSLFGFADAA
Sbjct:   38 KVYYVPLVPVVDGDCMPTACAFFPIFRQILIRERITLVHGHQASSVMSHEAILFAKTMGYRVAYTDHSLFGFADAA 113
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: D8LMM7_ECTSI (Phosphatidylinositol N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.250e-42
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VDGDCMPT CAFFP+FRQILIRERI+LVHGHQASSVMSHEAILFAKTMGYRV YTDHSLFGFADAA
Sbjct:   59 KVYYVPLVPVVDGDCMPTACAFFPIFRQILIRERITLVHGHQASSVMSHEAILFAKTMGYRVAYTDHSLFGFADAA 134
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A813C7N6_9DINO (PIGA protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C7N6_9DINO)

HSP 1 Score: 118 bits (296), Expect = 1.680e-32
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY P+ P VD D  PTF AFFPLFR+ILIRE I++VHGHQA+S ++HE IL A+TMG++  YTDHSLFGFADAA
Sbjct:   52 KVYYVPMTPFVDQDAFPTFYAFFPLFRKILIREGITIVHGHQATSTLTHECILHARTMGFKAVYTDHSLFGFADAA 127
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: W7TP55_9STRA (Phosphatidylinositol N-acetylglucosaminyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP55_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.550e-29
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADA 225
            KVYYCPL+   D D  PT  AFFPLFR ILIRERIS+VH HQA+SVMS E  L+A+TMGY+V YTDHSLFGFADA
Sbjct:   64 KVYYCPLLTFYDQDVWPTLFAFFPLFRHILIRERISIVHTHQATSVMSIECTLYARTMGYKVVYTDHSLFGFADA 138
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A397C7S5_9STRA (PIGA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C7S5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.370e-29
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VD   +PTF   F LFR +LIRERI +VHGHQA+S   HE IL AKTMGY+  YTDHSLFGFADAA
Sbjct:   55 KVYYLPLVPMVDNVTLPTFAGGFGLFRTVLIRERIQIVHGHQATSAFMHECILQAKTMGYKAIYTDHSLFGFADAA 130
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BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A6G0WGE1_9STRA (PIGA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGE1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.410e-29
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VD   +PTF   F LFR +LIRERI +VHGHQA+S   HE IL AKTMGY+  YTDHSLFGFADAA
Sbjct:   71 KVYYLPLVPMVDNVTLPTFTVGFGLFRTVLIRERIQIVHGHQATSAFMHECILQAKTMGYKAIYTDHSLFGFADAA 146
[Close]
BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A397A8Y7_9STRA (PIGA domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A8Y7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.490e-29
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VD   +PTF   F LFR +LIRERI +VHGHQA+S   HE IL AKTMGY+  YTDHSLFGFADAA
Sbjct:   55 KVYYLPLVPMVDNVTLPTFAGGFGLFRTVLIRERIQIVHGHQATSAFMHECILQAKTMGYKAIYTDHSLFGFADAA 130
[Close]
BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A813AD36_9DINO (PIGA protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AD36_9DINO)

HSP 1 Score: 112 bits (280), Expect = 1.500e-28
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY P+VP VD D MPT   F P  R ILIRERI++VHGHQA+S ++HE + FAK MGY+  YTDHSLFGFAD A
Sbjct:   84 KVYYAPVVPFVDQDSMPTLWTFLPYLRNILIRERITIVHGHQATSTLAHECLFFAKCMGYKAVYTDHSLFGFADMA 159
[Close]
BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A7S1GBW6_9STRA (Phosphatidylinositol N-acetylglucosaminyltransferase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBW6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.900e-28
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY P+ P+VD D MPT  A F LFR IL+RERI +VHGHQA+S + HE IL A+TMGY+  YTDHSLFGFADAA
Sbjct:   97 KVYYMPMTPLVDQDSMPTLFACFALFRNILLRERIDIVHGHQATSTLMHECILHARTMGYKACYTDHSLFGFADAA 172
[Close]
BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Match: A0A024THB4_9STRA (Phosphatidylinositol N-acetylglucosaminyltransferase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024THB4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.510e-28
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHEAILFAKTMGYRVTYTDHSLFGFADAA 228
            KVYY PLVP+VD   +PTF A F LFR +LIRERI +VHGHQA+S   HE IL AKTMGY+  YTDHSLFGFADAA
Sbjct:   74 KVYYLPLVPMVDNVTLPTFTAGFGLFRTVLIRERIQIVHGHQATSAFMHECILQAKTMGYKAIYTDHSLFGFADAA 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3190.8591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC35_9PHAE3.720e-4492.11GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LMM7_ECTSI2.250e-4292.11Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A813C7N6_9DINO1.680e-3269.74PIGA protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
W7TP55_9STRA3.550e-2973.33Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A397C7S5_9STRA5.370e-2969.74PIGA domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A6G0WGE1_9STRA7.410e-2969.74PIGA domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A397A8Y7_9STRA7.490e-2969.74PIGA domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A813AD36_9DINO1.500e-2865.79PIGA protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S1GBW6_9STRA3.900e-2868.42Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A024THB4_9STRA6.510e-2871.05Phosphatidylinositol N-acetylglucosaminyltransfera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3190contigH-paniculata_contig3190:1131..1358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog2880.D8LMM7
Preferred namePIGA
KEGG koko:K03857
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000506,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009893,GO:0009932,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0017176,GO:0019222,GO:0019538,GO:0019637,GO:0022414,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034097,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048468,GO:0048518,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050896,GO:0051704,GO:0051716,GO:0060560,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234,GO:1990823,GO:1990830
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsCOG0438@1,KOG1111@2759
Ec32 ortholog descriptionN-acetylglucosaminyl-phosphatidylinositol biosynthetic protein PigA, family GT4
Ec32 orthologEc-06_003950.1
EC2.4.1.198
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.4535048-CDS-H-paniculata_contig3190:1130..13581622929983.4535048-CDS-H-paniculata_contig3190:1130..1358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 1131..1358 -
1691481097.5142426-CDS-H-paniculata_contig3190:1130..13581691481097.5142426-CDS-H-paniculata_contig3190:1130..1358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 1131..1358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3190.8591.1prot_H-paniculata_contig3190.8591.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3190 1131..1358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3190.8591.1

>prot_H-paniculata_contig3190.8591.1 ID=prot_H-paniculata_contig3190.8591.1|Name=mRNA_H-paniculata_contig3190.8591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
KVYYCPLVPIVDGDCMPTFCAFFPLFRQILIRERISLVHGHQASSVMSHE
AILFAKTMGYRVTYTDHSLFGFADAA
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mRNA from alignment at H-paniculata_contig3190:1131..1358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3190.8591.1 ID=mRNA_H-paniculata_contig3190.8591.1|Name=mRNA_H-paniculata_contig3190.8591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig3190:1131..1358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGTACTACTGTCCGCTAGTGCCGATTGTAGACGGAGACTGCATGCC
GACTTTCTGCGCGTTCTTCCCGTTGTTCCGCCAGATCCTCATTCGAGAGC
GAATAAGCCTCGTGCATGGCCACCAGGCGTCATCTGTCATGTCCCATGAG
GCAATCCTGTTTGCGAAGACGATGGGCTACCGAGTGACGTACACGGATCA
CTCCCTCTTCGGATTCGCCGACGCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3190:1131..1358-

>mRNA_H-paniculata_contig3190.8591.1 ID=mRNA_H-paniculata_contig3190.8591.1|Name=mRNA_H-paniculata_contig3190.8591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig3190:1131..1358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGTACTACTGTCCGCTAGTGCCGATTGTAGACGGAGACTGCATGCC
GACTTTCTGCGCGTTCTTCCCGTTGTTCCGCCAGATCCTCATTCGAGAGC
GAATAAGCCTCGTGCATGGCCACCAGGCGTCATCTGTCATGTCCCATGAG
GCAATCCTGTTTGCGAAGACGATGGGCTACCGAGTGACGTACACGGATCA
CTCCCTCTTCGGATTCGCCGACGCAGCGAAGGTGTACTACTGTCCGCTAG
TGCCGATTGTAGACGGAGACTGCATGCCGACTTTCTGCGCGTTCTTCCCG
TTGTTCCGCCAGATCCTCATTCGAGAGCGAATAAGCCTCGTGCATGGCCA
CCAGGCGTCATCTGTCATGTCCCATGAGGCAATCCTGTTTGCGAAGACGA
TGGGCTACCGAGTGACGTACACGGATCACTCCCTCTTCGGATTCGCCGAC
GCAGCG
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