mRNA_H-paniculata_contig319.8588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig319.8588.1
Unique NamemRNA_H-paniculata_contig319.8588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: D8LB17_ECTSI (PINc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB17_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 3.640e-130
Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAPPT 711
            MGKAKKSRAVRVKFAQ KRLLSPKDCRLK N E  EAKRKKAK AETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSH GTYADDCL+QRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRK+SIERMAEAFGAPPT
Sbjct:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 200
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A836CF02_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF02_9STRA)

HSP 1 Score: 330 bits (846), Expect = 1.100e-108
Identity = 160/200 (80.00%), Postives = 179/200 (89.50%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAPPT 711
            MG+AKK RAV+VKFAQ+KRL+SPKD RLK   +  E K  KAK  ET  V Q P+AMFF +NTALGPPYHV++DTNFINFSIKNKLD+VK+MMDCLLAKA PC+TDCV+AELEKLGPKYR+ALRL+KD RFQRLPCSHKGTYADDC++QRAEQHRCYIVATCDKELKRRIRKI GVPIMYISNRKY+IERM EAFGAPP+
Sbjct:    1 MGRAKKQRAVKVKFAQSKRLISPKDPRLKEVAKKAEEKAAKAKEKETRQVTQTPSAMFFKYNTALGPPYHVIVDTNFINFSIKNKLDMVKSMMDCLLAKATPCITDCVIAELEKLGPKYRIALRLAKDERFQRLPCSHKGTYADDCILQRAEQHRCYIVATCDKELKRRIRKIAGVPIMYISNRKYTIERMPEAFGAPPS 200
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A397JSP6_9GLOM (PINc domain-containing protein n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397JSP6_9GLOM)

HSP 1 Score: 295 bits (755), Expect = 1.080e-94
Identity = 137/198 (69.19%), Postives = 174/198 (87.88%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAP 705
            MGKAK++R    KFA+ KRLL+PKD RLK+  E  + K ++ + +E  +V QV +++FF +NTALGPPYHVL+DTNFINFSI+NKL++V+AMMDCL AK+IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPC+HKGTYADDCL+QR  QH+CYIVATCD++LKRRIRKIPG+PIMYIS RKY+IER+ EA+GAP
Sbjct:   24 MGKAKRTR----KFAEAKRLLNPKDSRLKSVQEKQKTKEEQKRKSEVRNVPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVQAMMDCLYAKSIPCITDCVMAELEKLGPKYRIALRIARDPRFERLPCTHKGTYADDCLVQRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRKYTIERLPEAYGAP 217
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A812Y1D1_SYMMI (FCF1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1D1_SYMMI)

HSP 1 Score: 289 bits (740), Expect = 9.810e-93
Identity = 141/203 (69.46%), Postives = 168/203 (82.76%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAE---TNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAPPT 711
            M K KK+R + VK     +++S KD R+KAN E   A  +KA  A+   + HV Q PTA+FF HNT LGPPYHVL+DTNFINF+IKNKL+I K+MMDCLLAK IPC+TDCV+AELEKLG KYR+ALRL+KDPRF+RLPCSH GTYADDCL+ R +QHRCYIVATCDK+LKRRIRK+PGVPIMYI++RK+S+ERM EAFGAP T
Sbjct:    1 MTKQKKTRKIAVK-----KIISGKDPRIKANQEKQAADAQKALKAQKEASRHVTQAPTALFFTHNTQLGPPYHVLVDTNFINFAIKNKLEIYKSMMDCLLAKCIPCITDCVMAELEKLGTKYRLALRLAKDPRFERLPCSHPGTYADDCLLHRCQQHRCYIVATCDKDLKRRIRKVPGVPIMYINSRKFSVERMPEAFGAPKT 198
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A1Y1ZF27_9FUNG (Fcf1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZF27_9FUNG)

HSP 1 Score: 286 bits (732), Expect = 1.460e-91
Identity = 133/198 (67.17%), Postives = 168/198 (84.85%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAP 705
            MGKAKK+R    +F   KR+L+PKD RLK N E  + K ++ + +   H+ QV +++FF +NTALGPPYHVL+DTNFINFSI+NKL++VK+MMDCL AK IPC+TDCV+AELEKLGPKYRVALR+++DPRF+RLPC+HKGTYADDCL+ R  QH+CYIVATCD++LKRRIRKIPG+PIMYI+  KY+IER+ EA+GAP
Sbjct:    1 MGKAKKTR----QFGLVKRMLNPKDARLKENQEKLKKKEEEKEKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPCITDCVMAELEKLGPKYRVALRVARDPRFERLPCAHKGTYADDCLVNRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYIAQHKYTIERLPEAYGAP 194
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: UPI0009E60673 (rRNA-processing protein FCF1 homolog n=2 Tax=Scleractinia TaxID=6125 RepID=UPI0009E60673)

HSP 1 Score: 285 bits (728), Expect = 5.850e-91
Identity = 134/198 (67.68%), Postives = 163/198 (82.32%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAP 705
            MGKAKK+R    KFA  KR++SPKD R+K N E         +  ET HV+Q  +A+FF +NT LGPPY++L+DTNFINFSIKNKLDIVK+MMDCL AK +PC+TDCV+AELEKLG KYRVALR++KDPRF RLPC H+GTYADDC++ R +QH+CYIVATCD++LKRRIRK+PGVPIMYIS  KY+IERM +A+GAP
Sbjct:    1 MGKAKKTR----KFAAVKRMISPKDMRIKQNQEXXXXXXXXXEDNETRHVEQSSSALFFQYNTQLGPPYYILVDTNFINFSIKNKLDIVKSMMDCLYAKCVPCITDCVMAELEKLGSKYRVALRMAKDPRFDRLPCMHRGTYADDCIVNRIQQHKCYIVATCDRDLKRRIRKVPGVPIMYISQHKYTIERMPDAYGAP 194
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A397WAQ8_9GLOM (Fcf1-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397WAQ8_9GLOM)

HSP 1 Score: 284 bits (727), Expect = 7.990e-91
Identity = 133/196 (67.86%), Postives = 167/196 (85.20%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFG 699
            MGKAKK+R    +FA+ KRLL+PKD RLK+  E  + K ++ +     +V QV +++FF HN ALGPPYH+L+DTNFINFSI+NKL++V+AMMDCL AK IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPCSHKGTYADDCL++R  QH+CYIVATCDK+LKRRIRKIPG+PIMYIS RKY+IER+ E +G
Sbjct:    1 MGKAKKTR----RFAEVKRLLNPKDSRLKSVQEKQKKKNEEKEKETIRNVPQVASSLFFRHNAALGPPYHILVDTNFINFSIQNKLELVQAMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCSHKGTYADDCLVKRVMQHKCYIVATCDKDLKRRIRKIPGIPIMYISKRKYTIERLPENYG 192
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: A0A0H5R7T8_9EUKA (PINc domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7T8_9EUKA)

HSP 1 Score: 284 bits (726), Expect = 1.060e-90
Identity = 138/198 (69.70%), Postives = 163/198 (82.32%), Query Frame = 1 
Query:  112 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAP 705
            MGKAK++R    KFAQ KR+L+P D RLKAN+   E   K+ K  +   V+QV  AMFF +NT+LGPPYH+LIDTNFIN SI+N+LD+VK MMDCLLAK  PC+TDCV+AELEKLGPKYR+ALR++KDPRFQRLPC HKGTYADDCL+ RAEQH+CYIVATCDK+LKRRIRK+PG PIMYI   KYSIER+ +A  AP
Sbjct:    1 MGKAKRTR----KFAQVKRMLTPSDARLKANIAKKE---KELKPEKVQRVEQVSRAMFFKYNTSLGPPYHILIDTNFINASIQNRLDMVKGMMDCLLAKCTPCITDCVMAELEKLGPKYRLALRVAKDPRFQRLPCQHKGTYADDCLVARAEQHKCYIVATCDKDLKRRIRKVPGTPIMYIQAHKYSIERLPDALNAP 191
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: G4YYY4_PHYSP (PINc domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4YYY4_PHYSP)

HSP 1 Score: 285 bits (729), Expect = 1.230e-90
Identity = 138/199 (69.35%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:  109 SMGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEG-NEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGA 702
            +MGKAKK+R    KFA  KR++SP+D R+ +  +   +A  KK KAAE   + Q+P+ MFF +N+ALGPPY+V++DTNFINFSIKNKL++V AMMDCLLAK  PC+TDCV+AELEKLG KYRVALRL+KDPRF+RLPC+HKGTYADDCL+QR +QHRCY+VATCD+ELKRRIRK+PGVPIMYISNRKY IER+ EA  A
Sbjct:   31 TMGKAKKTR----KFAAVKRMISPRDTRINSVRKAVAQADEKKRKAAEPKQIDQIPSNMFFKYNSALGPPYNVIVDTNFINFSIKNKLEVVSAMMDCLLAKCTPCITDCVMAELEKLGHKYRVALRLAKDPRFERLPCTHKGTYADDCLLQRVQQHRCYVVATCDRELKRRIRKVPGVPIMYISNRKYVIERLPEANAA 225
[Close]
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Match: W2G0I5_PHYPR (PINc domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G0I5_PHYPR)

HSP 1 Score: 284 bits (726), Expect = 2.240e-90
Identity = 138/199 (69.35%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:  109 SMGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEG-NEAKRKKAKAAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGA 702
            +MGKAKK+R    KFA  KR++SP+D R+ +  +   + + KK K AE   + Q+P+ MFF +N+ALGPPY+VL+DTNFINFSIKNKL++V AMMDCLLAK+ PC+TDCV+AELEKLG KYRVALRL+KDPRF+RLPC+HKGTYADDCL+QR +QHRCYIVATCD+ELKRRIRK+PGVPIMYISNRKY IER+ EA  A
Sbjct:   18 TMGKAKKTR----KFAAVKRMISPRDTRINSVRKAVAKVEEKKRKEAEPKQIDQIPSNMFFKYNSALGPPYNVLVDTNFINFSIKNKLEVVSAMMDCLLAKSTPCITDCVMAELEKLGHKYRVALRLAKDPRFERLPCTHKGTYADDCLVQRVQQHRCYIVATCDRELKRRIRKVPGVPIMYISNRKYVIERLPEANAA 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig319.8588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB17_ECTSI3.640e-13095.50PINc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CF02_9STRA1.100e-10880.00Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A397JSP6_9GLOM1.080e-9469.19PINc domain-containing protein n=2 Tax=Glomeromyce... [more]
A0A812Y1D1_SYMMI9.810e-9369.46FCF1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A1Y1ZF27_9FUNG1.460e-9167.17Fcf1-domain-containing protein n=1 Tax=Basidiobolu... [more]
UPI0009E606735.850e-9167.68rRNA-processing protein FCF1 homolog n=2 Tax=Scler... [more]
A0A397WAQ8_9GLOM7.990e-9167.86Fcf1-domain-containing protein n=2 Tax=Gigaspora T... [more]
A0A0H5R7T8_9EUKA1.060e-9069.70PINc domain-containing protein n=1 Tax=Spongospora... [more]
G4YYY4_PHYSP1.230e-9069.35PINc domain-containing protein n=11 Tax=Phytophtho... [more]
W2G0I5_PHYPR2.240e-9069.35PINc domain-containing protein n=7 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig319contigH-paniculata_contig319:11420..16135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue1.2e-103
Seed eggNOG ortholog2880.D8LB17
Preferred nameFCF1
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1412@1,KOG3165@2759
Ec32 ortholog descriptionrRNA-processing protein Fcf1/Utp23
Ec32 orthologEc-27_005600.1
EC2.6.1.62,6.3.3.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Exons4
Model size1501
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig319.8588.1prot_H-paniculata_contig319.8588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig319 11531..15348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.92253-UTR-H-paniculata_contig319:11419..115301622929982.92253-UTR-H-paniculata_contig319:11419..11530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig319 11420..11530 +
1691481097.2519014-UTR-H-paniculata_contig319:11419..115301691481097.2519014-UTR-H-paniculata_contig319:11419..11530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig319 11420..11530 +
1622929983.0267067-UTR-H-paniculata_contig319:15348..161351622929983.0267067-UTR-H-paniculata_contig319:15348..16135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig319 15349..16135 +
1691481097.3071532-UTR-H-paniculata_contig319:15348..161351691481097.3071532-UTR-H-paniculata_contig319:15348..16135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig319 15349..16135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.9437726-CDS-H-paniculata_contig319:11530..116531622929982.9437726-CDS-H-paniculata_contig319:11530..11653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 11531..11653 +
1691481097.2716587-CDS-H-paniculata_contig319:11530..116531691481097.2716587-CDS-H-paniculata_contig319:11530..11653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 11531..11653 +
1622929982.9695776-CDS-H-paniculata_contig319:13814..139401622929982.9695776-CDS-H-paniculata_contig319:13814..13940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 13815..13940 +
1691481097.2803352-CDS-H-paniculata_contig319:13814..139401691481097.2803352-CDS-H-paniculata_contig319:13814..13940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 13815..13940 +
1622929982.9995248-CDS-H-paniculata_contig319:14455..146531622929982.9995248-CDS-H-paniculata_contig319:14455..14653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 14456..14653 +
1691481097.2883902-CDS-H-paniculata_contig319:14455..146531691481097.2883902-CDS-H-paniculata_contig319:14455..14653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 14456..14653 +
1622929983.011645-CDS-H-paniculata_contig319:15192..153481622929983.011645-CDS-H-paniculata_contig319:15192..15348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 15193..15348 +
1691481097.2968972-CDS-H-paniculata_contig319:15192..153481691481097.2968972-CDS-H-paniculata_contig319:15192..15348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig319 15193..15348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig319.8588.1

>prot_H-paniculata_contig319.8588.1 ID=prot_H-paniculata_contig319.8588.1|Name=mRNA_H-paniculata_contig319.8588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MGKAKKSRAVRVKFAQTKRLLSPKDCRLKANMEGNEAKRKKAKAAETNHV
KQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKA
IPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHKGTYADDCLIQR
AEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKYSIERMAEAFGAPPT
*
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mRNA from alignment at H-paniculata_contig319:11420..16135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig319.8588.1 ID=mRNA_H-paniculata_contig319.8588.1|Name=mRNA_H-paniculata_contig319.8588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4716bp|location=Sequence derived from alignment at H-paniculata_contig319:11420..16135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTAATGACAGTCATTGCGACTTCTACGTCTCTGCTGTACAGCATCTTG
ACCCTTTTTGGAGCTGAAAATATCGAAAGCACCAAGTTGACAGTGACCCG
GTAGAAAAAGCATGGGGAAGGCGAAAAAGTCACGAGCGGTACGGGTCAAA
TTCGCACAAACCAAGCGCCTGCTCAGCCCTAAGGACTGTAGGCTCAAGGC
CAACATGGAGGGCAATGAGGCAAAGCGAAAAAAGGTTAGCACTGCCTGCT
GACCGATGTGATCAGCATACGTCGGAGTCGTGACGTTTCATCCACCGGCA
TTTGCATATATGGCTACCTGATTGCATCTTCAACAGCTGTGCGCTTACTG
CACAGGTTTGCCCGTTGTCACCCAAGTTCACGAGCGATATGAGATTACTA
CTTAATTCTTGGAGCGATGCACCTAAAACCCAGAGCTTCATCCGAAAACG
TTCTCAACCTATATCTATAATTTTGTTCATGGTGAAGTAGTGGATCATTT
ACCAACAGAGGGTCGATCGCCCAGGCTCCATTCGAACAGATGTTTCGTAA
GCAGCGTGATGTACGCTGTGTGTACGTGCACACTGTAGTGTAGTTATTTT
GGCTGCATCGCCTGTGTGCTGTGATGTAATGTGCCCGCACCGGTGAAGTA
GTCAATGCGGCCATTGTACATGGACAGTCAATCAGTCCATCAGTTATTTT
GTTCAGCTTCAAATAGTCATCTTCATGCTCAGGTGTTGCTCTGGACCGTT
CCATTGACTCACCCTACTTCCTCCGGCTGTCTTCTGTACTTCCATGACAA
TAGTGTTTTGTAAACGTAGGGTACATCGACTCGATTCCCATGGAGACGAT
GACACGGACCCCCTTCTCTCCAACCACATCCGCGCAACATCGTCAATTGG
TTGTGTTGTTCCTGATTTTCAGTCGTACGACCATTGTGCTGGTTTATCAC
CATTCCTCTTCAAGTGTCCATATTTGTTTTTTTTCGTTTTCAAGCTTGCG
CAGTTAAGGCCAAGCTGGCCTAACCCAACCCCATCCTTAATCGTAACCTT
AACCCTGACACCCGCATGCTGTCAATTGGAACTCGGTAGCCCCTATAGTC
GACCAAACCCAGAGCCGCTGCGCGGCGCACAACGAGTAGATACGAAATTT
GGCAGCGGGACTGTCACAGCTACATTGTAGCAATAGCAAGTAGTGCTCAG
TCATGGAAATTTGAGACGAAGTGGATTAATAAACGACATGGGGCAGTCAT
CTCGTACACAGTCATCACTGTGGACTCATGTGTGTTAGACATGAAGCAAT
CGCCTGCTTTCAAGGGGAAAAATAGAAGGTAATCATTGCTGTAGCACCAG
CTTGTCCGACATGATGTGTTTGTCTCATTGATTCAGACCGAAAGATGCAT
GTGCTTCACATGATAAATCGTTAGACTGCGCAGACCCGTAGATCGAAACG
ATGAATCGAAACTAGTTTGCTTTGGGCACGTGGTCATCCTTGCAAAGGCT
CTGCCCCGTAGAAAAGCTATTGTAATATTCTCCCGCCGACGCCGCACTTC
TGCCACCCCTCGCCGACATGATGCTTCCACGATCGTCCAAGATTTGCCCC
CCCAAACTGCCTTGGAGGCTCAGCACGATGTATTTTTTTGTCTACATAGG
ATTATAACTGGTATCCCGCCAAATGCTGGATAATAACATAGAACACCCCT
GTTACAACCCTCCCCCCCCCTCTAATGCCCTTATCGCACTTCTTGGGCTA
TAGTCCAAGCCCTGTCTTCCGTGTGAACCATCGGTGCTTTTGTAAAAACA
ATGCATATGTGATGATCGGGTAGGAAAGATGAAATGTCCAGGGTTAAGAC
TGATCAAATCGTCCACAGTTAGTACTGCTCATTTTGTACCGATATATCGT
ATTATCGGTATGAGCGGTATGATATGTAGATAGATGGTTTCAACCTCCGA
TCCGTATGGGCCTGTAGTTGCCAATATTGATCGGTCCGAACTGATTTTAA
AAGCATCGAATAATAGAGAGCAGGATCGGTAGGTACCTTGTACGGTTCAT
CGCGTCGATCAGATCGCTAATATTATGCATTCCCATTTAGCACCGATATA
TCGTATGATCGGTATGGGCTATATGATCCGTACATGGGTTCCACCTCTAG
TCGATACCCTGCCCTACATTAGCACACGTTTGTGCACAGCTGATCCGTAC
GAGCGAACTCGTGCCGATATTAATCGGTCCGATGTGTGGAAATTTCCCTT
CTCTCGTTTTTCACCCCTATAATGTTGCTCTGGATCCCGAGCCGCTATGT
ACAGCCCCAGCACGTAGTGCTCGCCCAGAGGCTAATACCTTTTTTTACCC
GTTCGCGCATGCATGTTTATTTGGGGGCGCTTATCTACTCTGCAGGCGAA
GGCTGCAGAAACCAACCACGTGAAGCAAGTACCTACAGCAATGTTCTTCG
CGCACAACACCGCTCTCGGGCCACCGTACCACGTGCTCATTGATACCAAC
TTCATCAATTTTTCCATCAAGGTGTGTGCTTTGATAGAGTACTGTTGGAA
CGTGTATTGTTACCTATAGGTAGATCAGGATACGCAGTAAGCGGTAGGTA
GGCCGTGGAGTGAGCCAACTTGTGCGTGCCAGAATATGACTGGAACGCGG
ACATTGACGTATAGGTAGATCGGGAGAACCATTTGGCGGTAAGCCGTGGA
GTGAGCGCTAGTGGCTTCCCCGCGCTAGATTAATTTCTGTTGAAAATAGG
ATGCTGCAAGTGTACACAATCAGACCTTCCTCCCAGCTGTACCCTTCGCT
GATAAATGCTCTATCATGCATTTCAAGCGAAGCAAATCCCTGAAACAGGA
AAATTGAAAATTTTGCGGCTGTGTCGTGAACGCTGCTAGTAAATAGTATT
TTCAATAGACCCCCCCGCGGTAGAAAAACACGCCACAAAGTACGGTCTAG
TTAGCGGCACGATAAACTATTTCCTTCAGTGAATTTCCCCGCGATAAATA
AACGCCGCAAGTTTTACGTGTAATGTCTTTTGACAGAACAAACTGGATAT
CGTGAAGGCGATGATGGACTGTCTGTTGGCGAAGGCGATTCCATGCGTGA
CCGACTGCGTGGTTGCTGAGCTGGAGAAGCTGGGACCGAAGTACCGCGTT
GCTCTCCGCCTGTCGAAGGACCCTCGCTTTCAGAGGTTGCCATGCTCACA
CAAGGGAACATACGCAGACGACTGCTTGATTCAGGTGACACTGCGTTGTG
CCTCGTGCGGTTGAAAAAAGGATATTATACACGTTACATGTTGCGCTCAG
GGTCTATCTGTTTGTTGGACACGCATCTCACAGCGGAAGCAGAAGGTGTC
ATCATCAGCTACCTAACGTACGAGTTGCTGCAGCACGTCAAATTCCATGT
GGTTCCACAATTATGCGCCCGTGTTGCATGATCTGCCAATATGAATGCTG
AATTAAAGTTATGTGTCAAGTAATTTGCCGACCAAGTTTTCTTTTAACGG
TGACTCCAGGGTTCCTTTGCTCTTGGGTTTTTCCTAATGTGTCCGTCCGG
TCCAGTGTCGTCTACTCCAATAGCGCACCAGTGTCTCTACTGAAGCAGAC
TGAGTGTTCGTGTCAGGTTGCGAATATTATAACTGTAACTGGAGTTTTCG
AGGTTAACTCTCATCGATATGATCACTCCTACAGTAAAGATCCCCGGTGT
TATCGCCGGAAGAAAATTATTGAAAGAGCGCCGCGTGTTACTTGCTTGTG
TTCGTTTTGCTGGTGTAACGCAGCGCGCGGAGCAGCACCGATGTTATATC
GTGGCAACTTGCGATAAGGAGCTTAAGCGACGGATACGAAAGATTCCGGG
GGTGCCGATCATGTACATCTCCAACCGAAAGTATTCCATTGAGCGAATGG
CTGAGGCGTTCGGTGCACCGCCGACGTAGTGGAGGAAGGGAGGAAGGGGG
GGTCGAGCGTCATGGGAGGTTGACGACGCGTCTGCGTCTGTACTAAACTC
TGGGTGGTGTGCTTTGTTTCGCAGCGCTAGAGTATAGTGATGACTATCCG
CGCATGAAAGGAGAAACAACCAAGGAACTTGTTTGAGTTAGCGTCTTTAT
TTCATGGTGAAACCGCAGAGATAGAGATGATGCTGTAGCTTTGCATTTGG
AGTCGAGGATGTTGCAGCCATGAGTGATCCGTGGGATATTAGTTAGGGAT
CATACTGCTACGGTACGAGGGGCAAAAGTGCATTGTCTCCCATTTTCACG
ACGGCCGACTTGTCGAGATCTTGCCAGAGATGAGTGGTTGTTTTAGCGCG
CTTGCAGTTCTTCGCGGTATCAGATTAAAATTCGCAGAGTTGGCGACGTT
GCCGTGCCTACAAAATTCGCCAATATATTTTCTCTCAGTGTCGTGCATGA
TATTTTTTTTCTAAACTACATGCAGTACCATCAACAGAAATAAGTTGTGT
ATAGTACGATTTTTCAACACATTGATTGTTGTTGCCTTGAGGGGACTACG
GAGGTACATACTTACGATGGGACATACTTCTTACTCTTTCCCTGTCGCTT
GAAAAACACGCTGCTTTTTTTTCCAGTACAGTGGATCTATACAAATTATT
TTTTCTCCGGTTGTCGAAAAAACGATACGTTTTCGTCTCGGCGTAGTCAA
AAGAAAGAGAGAGAAAAAAAAGTGAAATGATAAATACCCCTTAAAAAGGT
CGGAAAATGGCATCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig319:11420..16135+

>mRNA_H-paniculata_contig319.8588.1 ID=mRNA_H-paniculata_contig319.8588.1|Name=mRNA_H-paniculata_contig319.8588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig319:11420..16135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAGGCGAAAAAGTCACGAGCGGTACGGGTCAAATTCGCACAAAC
CAAGCGCCTGCTCAGCCCTAAGGACTGTAGGCTCAAGGCCAACATGGAGG
GCAATGAGGCAAAGCGAAAAAAGATGGGGAAGGCGAAAAAGTCACGAGCG
GTACGGGTCAAATTCGCACAAACCAAGCGCCTGCTCAGCCCTAAGGACTG
TAGGCTCAAGGCCAACATGGAGGGCAATGAGGCAAAGCGAAAAAAGGCGA
AGGCTGCAGAAACCAACCACGTGAAGCAAGTACCTACAGCAATGTTCTTC
GCGCACAACACCGCTCTCGGGCCACCGTACCACGTGCTCATTGATACCAA
CTTCATCAATTTTTCCATCAAGGCGAAGGCTGCAGAAACCAACCACGTGA
AGCAAGTACCTACAGCAATGTTCTTCGCGCACAACACCGCTCTCGGGCCA
CCGTACCACGTGCTCATTGATACCAACTTCATCAATTTTTCCATCAAGAA
CAAACTGGATATCGTGAAGGCGATGATGGACTGTCTGTTGGCGAAGGCGA
TTCCATGCGTGACCGACTGCGTGGTTGCTGAGCTGGAGAAGCTGGGACCG
AAGTACCGCGTTGCTCTCCGCCTGTCGAAGGACCCTCGCTTTCAGAGGTT
GCCATGCTCACACAAGGGAACATACGCAGACGACTGCTTGATTCAGAACA
AACTGGATATCGTGAAGGCGATGATGGACTGTCTGTTGGCGAAGGCGATT
CCATGCGTGACCGACTGCGTGGTTGCTGAGCTGGAGAAGCTGGGACCGAA
GTACCGCGTTGCTCTCCGCCTGTCGAAGGACCCTCGCTTTCAGAGGTTGC
CATGCTCACACAAGGGAACATACGCAGACGACTGCTTGATTCAGCGCGCG
GAGCAGCACCGATGTTATATCGTGGCAACTTGCGATAAGGAGCTTAAGCG
ACGGATACGAAAGATTCCGGGGGTGCCGATCATGTACATCTCCAACCGAA
AGTATTCCATTGAGCGAATGGCTGAGGCGTTCGGTGCACCGCCGACGTAG
CGCGCGGAGCAGCACCGATGTTATATCGTGGCAACTTGCGATAAGGAGCT
TAAGCGACGGATACGAAAGATTCCGGGGGTGCCGATCATGTACATCTCCA
ACCGAAAGTATTCCATTGAGCGAATGGCTGAGGCGTTCGGTGCACCGCCG
ACGTAG
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