mRNA_H-paniculata_contig3186.8582.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 113 bits (283), Expect = 8.080e-25 Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 128 LMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHHCPWAKDTC 412
L +DI+ +VAEFV+D Q+LFFA VSRGWRD WG+RPT T+ +T TSV QL+ F GL TAAVC VA LG LDLL ARA C W ++TC
Sbjct: 3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 115 bits (289), Expect = 1.800e-24 Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 128 LMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHHCPWAKDTC 412
L +DI+ +V EFV+D Q+LFFA VSRGWRD WG+RPT T+ +T TSV QL+ F GL TAAVC VA LG LDLL ARA CPW ++TC
Sbjct: 5 LFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 5.000e-24 Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 2
Query: 146 IIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHHCPWAKDTC 412
++ +AEFV+D QHLFFA VSRGWRD WG+RPT T+ +T TSV QL+ F GL TAAVC VA LG LDLL ARA CPW ++TC
Sbjct: 27 LLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENTC 115
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE) HSP 1 Score: 105 bits (263), Expect = 5.940e-22 Identity = 56/102 (54.90%), Postives = 68/102 (66.67%), Query Frame = 2
Query: 122 NPLMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHH-CPWAKDTCPRAA 424
NPLM DI+ + EFV EQ++FFA VSR WRDAW RPT TR T T V QL+Q F+ GL P + VC +A+LG LDLLV AR H CPW ++TC A+
Sbjct: 3 NPLMQP-DIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCAS 103
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI) HSP 1 Score: 104 bits (260), Expect = 3.180e-20 Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 2
Query: 122 NPLMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHHCPWAKDTC 412
NPL +DI+ +A+FV DEQHLFFA VS WR+AWG RPT TR +T H + QL F GL A VC A+A G L++L AR CPW + TC
Sbjct: 31 NPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGRRPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELKCPWGRSTC 127
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 2.610e-19 Identity = 55/102 (53.92%), Postives = 62/102 (60.78%), Query Frame = 2
Query: 122 NPLMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTA-AVCSAVASLGNLDLLVCARAHHCPWAKDTCPRAA 424
NP D+I +EFV D+Q LFFA VSR WR AW RPT TR +TP TS QL GL P AVC+A+ASLG LDLL ARA W K TC +AA
Sbjct: 3 NPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.690e-18 Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 2
Query: 164 EFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAVCSAVASLGNLDLLVCARAHH-CPWAKDTCPRAA 424
EFV EQ+LFFA VSR WRDAW RPT TR VT T V QL+Q F GL + VC +A+LG LDLLV AR + CPW +DTC A+
Sbjct: 2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.260e-15 Identity = 50/102 (49.02%), Postives = 57/102 (55.88%), Query Frame = 2
Query: 122 NPLMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPTAAV-CSAVASLGNLDLLVCARAHHCPWAKDTCPRAA 424
N M +DI+ +A+FV D+Q LFFA VSR WRDAWGER T T VTPHT+ QL F GL C A GNLDLL A CPW + AA
Sbjct: 17 NVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPWTRSLSAAAA 118
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.060e-13 Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query: 128 LMNKLDIIGSVAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGL-HPTAAVCSAVASLGNLDLLVCARAHHCPWAKDTCPRAA 424
L + +D++ S+ FV ++Q LFFA VSR WR+AWG RP T VT +SV QL F GL +C+A+A LGNL+LL AR C W T AA
Sbjct: 57 LADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 3.030e-11 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 2
Query: 158 VAEFVEDEQHLFFALVSRGWRDAWGERPTFTRVVTPHTSVGQLTQCFRWGLHPT---AAVCSAVASLGNLDLLVCARAHHCPWAKDTC 412
+AEFV+ +Q+LF A VS+ +R AWG R T TR V TSV QLT C GL + A +C+A A G LDLL A+ C W TC
Sbjct: 4 LAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWTPATC 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3186.8582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3186.8582.1 >prot_H-paniculata_contig3186.8582.1 ID=prot_H-paniculata_contig3186.8582.1|Name=mRNA_H-paniculata_contig3186.8582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=534bp MMKKFPLAVPVPLLTRSHNFLLLDTEYIFIMQNYNPLMNKLDIIGSVAEFback to top mRNA from alignment at H-paniculata_contig3186:7204..9415+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3186.8582.1 ID=mRNA_H-paniculata_contig3186.8582.1|Name=mRNA_H-paniculata_contig3186.8582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2212bp|location=Sequence derived from alignment at H-paniculata_contig3186:7204..9415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3186:7204..9415+ >mRNA_H-paniculata_contig3186.8582.1 ID=mRNA_H-paniculata_contig3186.8582.1|Name=mRNA_H-paniculata_contig3186.8582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3204bp|location=Sequence derived from alignment at H-paniculata_contig3186:7204..9415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |