mRNA_H-paniculata_contig31790.8563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31790.8563.1
Unique NamemRNA_H-paniculata_contig31790.8563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31790.8563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31790contigH-paniculata_contig31790:160..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.9781742-CDS-H-paniculata_contig31790:159..5371622929978.9781742-CDS-H-paniculata_contig31790:159..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31790 160..537 -
1691481095.5989292-CDS-H-paniculata_contig31790:159..5371691481095.5989292-CDS-H-paniculata_contig31790:159..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31790 160..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31790.8563.1prot_H-paniculata_contig31790.8563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31790 160..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31790.8563.1

>prot_H-paniculata_contig31790.8563.1 ID=prot_H-paniculata_contig31790.8563.1|Name=mRNA_H-paniculata_contig31790.8563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
LLYSALRRDDVKDMRGATSPRQVWVRLQEWYMLQTQGGISALYKSFSEME
MSVDTNAVAFMTELEVLAEQLSAKGCVITQNQAFTRFLSALPTPEYEWQV
EILTRERDVTREMILGSVREQFATL*
back to top

mRNA from alignment at H-paniculata_contig31790:160..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31790.8563.1 ID=mRNA_H-paniculata_contig31790.8563.1|Name=mRNA_H-paniculata_contig31790.8563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig31790:160..537- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTATATTCTGCATTAAGAAGAGATGACGTAAAGGATATGAGAGGGGC
CACGTCACCTCGACAGGTCTGGGTTCGCCTACAAGAGTGGTACATGCTCC
AAACTCAGGGCGGCATTAGTGCACTATATAAGTCATTTTCAGAGATGGAG
ATGTCGGTTGACACTAACGCGGTTGCGTTCATGACTGAGCTCGAGGTTCT
TGCCGAGCAACTCAGCGCAAAAGGCTGCGTGATCACGCAAAATCAAGCTT
TCACCCGCTTCTTGTCCGCACTTCCTACCCCCGAATATGAATGGCAAGTC
GAGATTCTGACAAGAGAAAGAGATGTCACGAGAGAAATGATTTTAGGGAG
TGTCAGAGAGCAGTTCGCGACCCTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31790:160..537-

>mRNA_H-paniculata_contig31790.8563.1 ID=mRNA_H-paniculata_contig31790.8563.1|Name=mRNA_H-paniculata_contig31790.8563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig31790:160..537- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTATATTCTGCATTAAGAAGAGATGACGTAAAGGATATGAGAGGGGC
CACGTCACCTCGACAGGTCTGGGTTCGCCTACAAGAGTGGTACATGCTCC
AAACTCAGGGCGGCATTAGTGCACTATATAAGTCATTTTCAGAGATGGAG
ATGTCGGTTGACACTAACGCGGTTGCGTTCATGACTGAGCTCGAGGTTCT
TGCCGAGCAACTCAGCGCAAAAGGCTGCGTGATCACGCAAAATCAAGCTT
TCACCCGCTTCTTGTCCGCACTTCCTACCCCCGAATATGAATGGCAAGTC
GAGATTCTGACAAGAGAAAGAGATGTCACGAGAGAAATGATTTTAGGGAG
TGTCAGAGAGCAGTTCGCGACCCTGTAACTTCTATATTCTGCATTAAGAA
GAGATGACGTAAAGGATATGAGAGGGGCCACGTCACCTCGACAGGTCTGG
GTTCGCCTACAAGAGTGGTACATGCTCCAAACTCAGGGCGGCATTAGTGC
ACTATATAAGTCATTTTCAGAGATGGAGATGTCGGTTGACACTAACGCGG
TTGCGTTCATGACTGAGCTCGAGGTTCTTGCCGAGCAACTCAGCGCAAAA
GGCTGCGTGATCACGCAAAATCAAGCTTTCACCCGCTTCTTGTCCGCACT
TCCTACCCCCGAATATGAATGGCAAGTCGAGATTCTGACAAGAGAAAGAG
ATGTCACGAGAGAAATGATTTTAGGGAGTGTCAGAGAGCAGTTCGCGACC
CTGTAA
back to top