mRNA_H-paniculata_contig11327.856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11327.856.1
Unique NamemRNA_H-paniculata_contig11327.856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.550e-27
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGISSLEINGVPKEL 213
            NFVTGLALMVTSFVLNLVEST+DINA LKW+YRLFP FCLGDGL QLV C  GKTC+ + SL  + VPKEL
Sbjct: 1658 NFVTGLALMVTSFVLNLVESTRDINASLKWIYRLFPGFCLGDGLAQLVLCKNGKTCVDVLSLGRDRVPKEL 1728
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.100e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTC 168
            NF+TGL LM+TSFVLNL+EST+ IN  LK+V+R+FP FCLGDGL QL  CD+GK C
Sbjct:  450 NFITGLCLMITSFVLNLLESTQAINYYLKYVFRIFPIFCLGDGLAQLAVCDEGKDC 505
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A7S2IKK8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IKK8_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-15
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGISSLEINGVPKEL 213
            NFVTGL L++ S++LN++ESTKD+N KL+WVYRLFP FCLG GL Q+  C    T    + L ++  P  L
Sbjct:  403 NFVTGLLLLIVSYILNVIESTKDVNEKLEWVYRLFPGFCLGHGLLQI--CTASNTAAQAAELHLHVSPNFL 471
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.270e-15
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*C-DQGKTCMGIS 180
            NF+TGL LM+TSFVLN++E+T+++N  L+++YRLFP FCLGD L Q+  C D G  C+ ++
Sbjct:  831 NFITGLCLMITSFVLNIIENTQEVNYSLRFLYRLFPGFCLGDALAQIAVCQDPGANCLRVT 891
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A812GER7_9DINO (ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GER7_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 1.010e-14
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGISSLEING 198
            NF+TGL LM+TS++LNL+ESTKD+NA L W+YRLFP FCLG GL ++         +G+  + + G
Sbjct:   54 NFLTGLLLMLTSYILNLIESTKDVNASLMWIYRLFPGFCLGHGLFEICTNSVISEQLGVEDIHLLG 119
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-14
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVY-------------RLFPDFCLGDGLTQLV*CDQGKTC 168
            NF+TGLALMVTSFVL+L++ST+  N +L+W Y             RLFP FCLGDGL QLV C  G TC
Sbjct: 1653 NFLTGLALMVTSFVLSLLDSTRATNLRLRWFYSMXXXXXXXXXXXRLFPGFCLGDGLAQLVLCTDGHTC 1721
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A812QND9_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QND9_SYMMI)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGI 177
            NF++GL LMV SFVL  + ST+ +   L++++RLFP FCLGDGLTQL  CD G+ C  I
Sbjct:  472 NFLSGLCLMVVSFVLTTINSTESVAVDLRYIFRLFPSFCLGDGLTQLALCDNGENCPNI 530
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A812XR15_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XR15_SYMMI)

HSP 1 Score: 74.7 bits (182), Expect = 1.860e-14
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGISSLEING 198
            NF+TGL LM+TS++LNL+ESTKD+N  L W+YRLFP FCLG GL ++         +G+  + + G
Sbjct:  117 NFLTGLLLMLTSYILNLIESTKDVNESLMWIYRLFPGFCLGHGLFEICTNSVISQQLGVQDIHLLG 182
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A482T2X8_9ARCH (ATP-binding cassette domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2X8_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 3.350e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGIS 180
            NF+TGL LM+ SF+L  + ST +IN  L++V+RLFP FCLGD  TQL  C +G +C  I+
Sbjct:  569 NFLTGLCLMIVSFILTYIPSTTEINVSLRYVFRLFPAFCLGDIFTQLSICTEGSSCPAIT 628
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BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Match: A0A7S1R4D9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4D9_ALECA)

HSP 1 Score: 70.5 bits (171), Expect = 1.590e-12
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 NFVTGLALMVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*CDQGKTCMGI 177
            NFVTGL LM+TS++L+ +E TK++N  L W+YR+FP FCLG GL Q+       T  GI
Sbjct:  279 NFVTGLILMITSYILSAIEDTKEVNRSLMWLYRIFPGFCLGHGLFQICTNSVAATTFGI 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11327.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL55_ECTSI1.550e-2777.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U9S9_9STRA6.100e-1869.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2IKK8_9DINO1.220e-1552.11Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S1UE30_9STRA4.270e-1554.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812GER7_9DINO1.010e-1451.52ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A835ZC34_9STRA1.100e-1456.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812QND9_SYMMI1.480e-1455.93ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A812XR15_SYMMI1.860e-1450.00ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A482T2X8_9ARCH3.350e-1353.33ATP-binding cassette domain-containing protein n=1... [more]
A0A7S1R4D9_ALECA1.590e-1252.54Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11327contigH-paniculata_contig11327:5854..7246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size215
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11327.856.1prot_H-paniculata_contig11327.856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11327 5922..7222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928841.0253036-UTR-H-paniculata_contig11327:5853..59211622928841.0253036-UTR-H-paniculata_contig11327:5853..5921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11327 5854..5921 -
1691480640.6114361-UTR-H-paniculata_contig11327:5853..59211691480640.6114361-UTR-H-paniculata_contig11327:5853..5921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11327 5854..5921 -
1622928841.1035278-UTR-H-paniculata_contig11327:7222..72461622928841.1035278-UTR-H-paniculata_contig11327:7222..7246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11327 7223..7246 -
1691480640.6392322-UTR-H-paniculata_contig11327:7222..72461691480640.6392322-UTR-H-paniculata_contig11327:7222..7246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11327 7223..7246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928841.0611627-CDS-H-paniculata_contig11327:5921..59581622928841.0611627-CDS-H-paniculata_contig11327:5921..5958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11327 5922..5958 -
1691480640.6217499-CDS-H-paniculata_contig11327:5921..59581691480640.6217499-CDS-H-paniculata_contig11327:5921..5958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11327 5922..5958 -
1622928841.0785303-CDS-H-paniculata_contig11327:7136..72221622928841.0785303-CDS-H-paniculata_contig11327:7136..7222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11327 7137..7222 -
1691480640.6298022-CDS-H-paniculata_contig11327:7136..72221691480640.6298022-CDS-H-paniculata_contig11327:7136..7222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11327 7137..7222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11327.856.1

>prot_H-paniculata_contig11327.856.1 ID=prot_H-paniculata_contig11327.856.1|Name=mRNA_H-paniculata_contig11327.856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MVTSFVLNLVESTKDINAKLKWVYRLFPDFCLGDGLTQLV*
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mRNA from alignment at H-paniculata_contig11327:5854..7246-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11327.856.1 ID=mRNA_H-paniculata_contig11327.856.1|Name=mRNA_H-paniculata_contig11327.856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1393bp|location=Sequence derived from alignment at H-paniculata_contig11327:5854..7246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTCGTGACTGGCCTTGCTTTGATGGTGACGTCCTTCGTGCTCAACCT
GGTAGAATCTACGAAGGATATCAACGCGAAATTGAAATGGGTGTACAGGC
TGTTCCCAGAGTGAGCAGTCTCAGAGGACGTCGTTCAGTGACCGACAGGG
GGTGAGGTGTAAACATTCCGGAAAATTCCGTACGGGGAGAAGAATATTAT
ATTATCCAATATTGTAATACCCCTTTATCCAATATTGTAAGACAACAGTT
CGATACGGCCAATGACGGTGGACCCTAACAAAGTAAATCAAGTAACAAAA
TGGATCAATATCAACAATAAAAAGTTAGCCCCGTTCTTTTTGTAGATTTT
AAAGTGTTGTGCAGCAAAACTTTACGGTTGGAGATGTTACGCCGACGCAG
AGTAGAGTAGAGTAGAGTAGAGTAATACCCGGGTATCGGCGTGAAGGTGA
AGCTTTCAGTTCTCCGACGATGCAGGTCTTTTACGGTCGACGAGCAAAAT
TTACGTCTACAGCAAATATATCACTTGGAGCATTCAAAACCGTGTTTTTT
CGCCGAAATCATTCGTGTAAGTCACGGGCTAGTCCCGATGGTCAATTCGC
GCTATCGTTTGTCGTCTAAACAACCTCAGTACCAGGCGAAGAACGATACA
GGTTCTACATATAACAGTATATTGGTGAAATGGGGACCCAACTTTGAGAT
GGGGAGCCTGGGTTATATTGGAAATAGGGTGTTTCCTGAAAATCAATTTC
GGATCTTCAGGATACAGCCTATTTCCAATATAACCCAGGGTCGCCATCTC
AAAGTTGGGTCCCCATTTCACCAATGTGCTGTTATATTAGGAATCACGGT
AGTACGCAAGGGATACTACTGCACACCAGCATCCTCGCGATGCGTGTTTT
AGAACACGCCTTATTTATGGCCATTGCGACTCCCCTTGATCTTTTAGATC
CTTTGACGAGTCAGAGGGTGTAATTTGTGTTTTTGAAACTGTTTAGTCTC
TTTTTCTTGGGAAAGGAAAGTCTAATGCCAAGAAACTAGCTATTTGTGCT
AGGACGTGCAGCATGTCAGATGCATGAAATGGTGAAACATTTCAAGTTAC
CGGTCTCTACGCTACACTTGGTAAGTCGTACAGGCTATGGCTCGTTTTTG
GGCGGATATGTACCCACTGACGATAAGTCCGGCGGGGCTTAGGTAGAGTG
TTGTTTATGGTTCTGCGGCTACTTCGTTGTCCCGGAGGCCATTGTTTTTG
TTATGACTGTTTCCATTTTTTTCGCCCGCTATTGCCAGTTTCTGTTTGGG
AGATGGACTTACTCAGCTGGTATAATGCGACCAGGGAAAAACGTGCATGG
GCATCTCTAGCCTGGAAATCAACGGGGTACCTAAAGAGCTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11327:5854..7246-

>mRNA_H-paniculata_contig11327.856.1 ID=mRNA_H-paniculata_contig11327.856.1|Name=mRNA_H-paniculata_contig11327.856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig11327:5854..7246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACGTCCTTCGTGCTCAACCTGGTAGAATCTACGAAGGATATCAA
CGCGAAATTGAAATGGGTGTACAGGCTGTTCCCAGAATGGTGACGTCCTT
CGTGCTCAACCTGGTAGAATCTACGAAGGATATCAACGCGAAATTGAAAT
GGGTGTACAGGCTGTTCCCAGATTTCTGTTTGGGAGATGGACTTACTCAG
CTGGTATAATTTCTGTTTGGGAGATGGACTTACTCAGCTGGTATAA
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