prot_H-paniculata_contig31750.8551.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31750.8551.1
Unique Nameprot_H-paniculata_contig31750.8551.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length125
Homology
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BLAST of mRNA_H-paniculata_contig31750.8551.1 vs. uniprot
Match: D7FWB7_ECTSI (RABLI1, a divergent Ectocarpus-specific RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.550e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:   75 AWGVADRHPSALFKVLIIGAHGVGKTSLCRALTVGGFVFDYQP 117
            AW VA R PSALFK+L++G +GVGKT+L RAL   GF+ +Y P
Sbjct:   13 AWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSP 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31750.8551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWB7_ECTSI2.550e-760.47RABLI1, a divergent Ectocarpus-specific RAB-like G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 80..122
e-value: 8.6E-6
score: 27.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..124
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 84..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31750contigH-paniculata_contig31750:1389..2288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31750.8551.1mRNA_H-paniculata_contig31750.8551.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31750 1389..2315 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31750.8551.1 ID=prot_H-paniculata_contig31750.8551.1|Name=mRNA_H-paniculata_contig31750.8551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MCHTCFPFMLPYRTWVQENRITKLFVVDSLFPQIGIWAFLKAMVYFPCML
SQHVAFLRERQRAGDLRCPWQTREAWGVADRHPSALFKVLIIGAHGVGKT
SLCRALTVGGFVFDYQPGFVGEGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase