mRNA_H-paniculata_contig31750.8551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31750.8551.1
Unique NamemRNA_H-paniculata_contig31750.8551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31750.8551.1 vs. uniprot
Match: D7FWB7_ECTSI (RABLI1, a divergent Ectocarpus-specific RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.290e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  250 AWGVADRHPSALFKVLIIGAHGVGKTSLCRALTVGGFVFDYQP 378
            AW VA R PSALFK+L++G +GVGKT+L RAL   GF+ +Y P
Sbjct:   13 AWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSP 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31750.8551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWB7_ECTSI3.290e-760.47RABLI1, a divergent Ectocarpus-specific RAB-like G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31750contigH-paniculata_contig31750:1389..2315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRABLI1, a divergent Ectocarpus-specific RAB-like GTPase
Ec32 orthologEc-25_003780.1
Exons3
Model size402
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31750.8551.1prot_H-paniculata_contig31750.8551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31750 1389..2288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.6657836-CDS-H-paniculata_contig31750:1388..15461622929977.6657836-CDS-H-paniculata_contig31750:1388..1546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 1389..1546 -
1691481095.02939-CDS-H-paniculata_contig31750:1388..15461691481095.02939-CDS-H-paniculata_contig31750:1388..1546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 1389..1546 -
1622929977.6873648-CDS-H-paniculata_contig31750:1762..18801622929977.6873648-CDS-H-paniculata_contig31750:1762..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 1763..1880 -
1691481095.0476646-CDS-H-paniculata_contig31750:1762..18801691481095.0476646-CDS-H-paniculata_contig31750:1762..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 1763..1880 -
1622929977.7105083-CDS-H-paniculata_contig31750:2189..22881622929977.7105083-CDS-H-paniculata_contig31750:2189..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 2190..2288 -
1691481095.0594368-CDS-H-paniculata_contig31750:2189..22881691481095.0594368-CDS-H-paniculata_contig31750:2189..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31750 2190..2288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.7283974-UTR-H-paniculata_contig31750:2288..23151622929977.7283974-UTR-H-paniculata_contig31750:2288..2315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31750 2289..2315 -
1691481095.0674713-UTR-H-paniculata_contig31750:2288..23151691481095.0674713-UTR-H-paniculata_contig31750:2288..2315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31750 2289..2315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31750.8551.1

>prot_H-paniculata_contig31750.8551.1 ID=prot_H-paniculata_contig31750.8551.1|Name=mRNA_H-paniculata_contig31750.8551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MCHTCFPFMLPYRTWVQENRITKLFVVDSLFPQIGIWAFLKAMVYFPCML
SQHVAFLRERQRAGDLRCPWQTREAWGVADRHPSALFKVLIIGAHGVGKT
SLCRALTVGGFVFDYQPGFVGEGT*
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mRNA from alignment at H-paniculata_contig31750:1389..2315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31750.8551.1 ID=mRNA_H-paniculata_contig31750.8551.1|Name=mRNA_H-paniculata_contig31750.8551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig31750:1389..2315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGCCAAGGAGGCTGGCACGTGTGCATGTGCCATACATGTTTTCCATT
TATGCTACCGTATCGGACATGGGTTCAAGAAAACAGGATCACTAAACTGT
TCGTTGTGGACAGTCTCTTCCCTCAGGTGGGGTTTCCGTCAGTGGCTTGA
TATCCTCGGCTGTGAAACGTACCGTGGATGCGCAATGTTTGATTTATCCA
GACGGCGTGCATAATCGCGTTCAGAGAATGACGTCGGATGCATGTAGTAC
GTTAGCATAATTTTCTTCGGATTTGTACATACCCGAAGCTACACGAGAGG
TCGTACTTACAAATGGTGACAGCATGTGGCAACGTACCCCTCTGTCCACC
TGCATAGTATTCACAGAGTTACTGGGCGTGTCAGGACTGCAAGCTGCTGG
CAATCCCTGCACCGATGTGTCTTTTCACTGTGCAGATCGGGATATGGGCG
TTTCTTAAAGCTATGGTGTACTTTCCGTGCATGCTTTCTCAGCATGTGGC
GTTCTTGAGGGAGCGACAAAGGGCAGGCGACCTGCGCTGCCCATGGCAAA
CGAGTGAGTGAAACGGTACCGGTAACAAAGAAACCAATATCAAAGATTCA
ACACGAGCAGACGGTCATGACGGATTTTCATGGGAATTAACATGAGTATT
GGCGTTCAACCCCCCCGGAGGCTAATTTCCACGTTCTGGTATTAGTGGCC
TAATTGATGTTGGCCGTGAGCCTTTTTGTTGACGAAAACCGATCTGTGTA
TCGATTCCAATGGACGCAGGGGAGGCCTGGGGCGTTGCCGATCGACATCC
GTCTGCGCTGTTTAAGGTGTTAATAATTGGGGCGCATGGTGTGGGCAAAA
CATCTCTCTGTCGTGCTTTGACCGTCGGCGGTTTCGTGTTCGATTATCAA
CCTGGCTTTGTAGGTGAGGGCACATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31750:1389..2315-

>mRNA_H-paniculata_contig31750.8551.1 ID=mRNA_H-paniculata_contig31750.8551.1|Name=mRNA_H-paniculata_contig31750.8551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig31750:1389..2315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCATACATGTTTTCCATTTATGCTACCGTATCGGACATGGGTTCA
AGAAAACAGGATCACTAAACTGTTCGTTGTGGACAGTCTCTTCCCTCAGA
TGTGCCATACATGTTTTCCATTTATGCTACCGTATCGGACATGGGTTCAA
GAAAACAGGATCACTAAACTGTTCGTTGTGGACAGTCTCTTCCCTCAGAT
CGGGATATGGGCGTTTCTTAAAGCTATGGTGTACTTTCCGTGCATGCTTT
CTCAGCATGTGGCGTTCTTGAGGGAGCGACAAAGGGCAGGCGACCTGCGC
TGCCCATGGCAAACGAATCGGGATATGGGCGTTTCTTAAAGCTATGGTGT
ACTTTCCGTGCATGCTTTCTCAGCATGTGGCGTTCTTGAGGGAGCGACAA
AGGGCAGGCGACCTGCGCTGCCCATGGCAAACGAGGGAGGCCTGGGGCGT
TGCCGATCGACATCCGTCTGCGCTGTTTAAGGTGTTAATAATTGGGGCGC
ATGGTGTGGGCAAAACATCTCTCTGTCGTGCTTTGACCGTCGGCGGTTTC
GTGTTCGATTATCAACCTGGCTTTGTAGGTGAGGGCACATAGGGGAGGCC
TGGGGCGTTGCCGATCGACATCCGTCTGCGCTGTTTAAGGTGTTAATAAT
TGGGGCGCATGGTGTGGGCAAAACATCTCTCTGTCGTGCTTTGACCGTCG
GCGGTTTCGTGTTCGATTATCAACCTGGCTTTGTAGGTGAGGGCACATAG
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