mRNA_H-paniculata_contig31698.8541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31698.8541.1
Unique NamemRNA_H-paniculata_contig31698.8541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: A0A7M5V2B3_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V2B3_9CNID)

HSP 1 Score: 135 bits (341), Expect = 2.230e-37
Identity = 65/149 (43.62%), Postives = 99/149 (66.44%), Query Frame = 3
Query:  126 KCIFRYLSTVPDLGITFGGKSNGHGL-EGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            K + RYL    D G+ + G  +G  L  GF DADWA D+D RKST+GYVFK    T+SW S++Q +V  S+TEAEYVA  +A +E ++LR L + + F   + +K+FE+N+ A++L+K    H RTKHI +++H +R+ + + V+ L+Y
Sbjct:    8 KRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSTTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPSKMFEDNQGAIDLAKNPTHHSRTKHIDIKFHHVRDAVAKKVIDLEY 156          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM)

HSP 1 Score: 137 bits (345), Expect = 3.870e-37
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 3
Query:  126 KCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            K I +YL T  DLG+ F G + G  L G+ DA+WA D+D R+STTGYVF  N   ISW S++Q  V  SSTEAEY+A   A +E V+LR+LL  +G  C  +T +F++N+  + L+K    H RTKHI +++H +RE + + V+ L+Y
Sbjct:   76 KRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEY 222          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: A0A0J7K4U5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4U5_LASNI)

HSP 1 Score: 136 bits (342), Expect = 1.760e-36
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  108 SDFSTCKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIR 545
            S +   K I +YL    DLGI +G   +   + G+ DAD+A D++ R+STTGYVF    G ++W S++Q LVT S+TEA+YVA   A KE ++LR+LL  IG GC E+T LF +N+SA+ L K    H RTKHI +R+H I +W R
Sbjct:   84 SHWLAVKRIVKYLKGTLDLGIRYGSGKSLLQVVGYSDADYANDIETRRSTTGYVFMLVNGPVTWSSQRQKLVTLSTTEAKYVAAASAAKEMIWLRKLLSDIGHGCSEATVLFIDNQSAIRLVKNPEFHKRTKHIAIRFHIIPQWAR 229          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 137 bits (344), Expect = 4.610e-36
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 3
Query:  108 SDFSTCKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            S +   K I +YL T  DLG+ F G + G  L G+ DA+WA D+D R+STTGYVF  N   ISW S++Q  V  SSTEAEY+A   A +E V+LR+LL  +G  C  +T  F++N+  + L+K    H RTKHI +++H +RE + + V+ L+Y
Sbjct:  129 SHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEY 281          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 132 bits (332), Expect = 8.860e-36
Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  126 KCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIG-FGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKYV 572
            K +FRY+      GI F    N  GL+G+ DADWA D++ R+ST+GY F  N G ISW S+KQ  V  SSTEAEY+A  EA +E V+L+  L  +G     E+ K++E+N+ ++ L+K    H RTKHI +R+H +RE + +G + L+YV
Sbjct:    1 KRVFRYIQGTKTHGIEFQASCN-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYV 149          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 133 bits (335), Expect = 1.130e-35
Identity = 67/156 (42.95%), Postives = 98/156 (62.82%), Query Frame = 3
Query:  105 MSDFSTCKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKYV 572
            ++ ++  K I RYL    D G+ +    +   +EG+VDAD+AED++ R+STTGYVF    G ++W +++Q +VT S+TEAEYVA   A KE ++LR LL  +   C  +TK+F +N+S + L + S  H RTKHI VR H IRE +  G +  K V
Sbjct:   27 VNHWNAVKRIIRYLLNTVDRGVLYESGGSNEEIEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCV 182          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: UPI001AAD17B1 (secreted RxLR effector protein 161-like n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD17B1)

HSP 1 Score: 132 bits (333), Expect = 3.520e-35
Identity = 71/155 (45.81%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  111 DFSTCKCIFRYLSTVPD--LGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            D++  K I RYL    D  L ++  GKS   GL G+VDADWA D  DRKST+G++F    G ISW +RKQ  VT SSTEAEYVA  +AG+E ++LR+LL  +    +EST ++E+N+  + L++    + RTKHI VR+H +R+   +G + L+Y
Sbjct:   58 DWNAAKRIIRYLKGTIDFKLKLSSTGKS---GLTGYVDADWAGDPSDRKSTSGHLFLFKDGLISWTTRKQSTVTLSSTEAEYVAASQAGQEVIWLRQLLEDLDQNQKESTPIYEDNQGCIALAQTERINPRTKHIDVRYHFLRDLQEQGQMDLRY 209          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 133 bits (334), Expect = 7.950e-35
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 3
Query:   78 PSSTSYGGPMSDFSTCKC---------IFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIG-FGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            P   +  G +S FS+  C         + RYL   P+ G+ F  +  G  + G+ DADWA D++ R+ST+GYVF  N G ISW S+KQ  V  SSTEAEY+A  EA KE V+L+  L  +G     E+ K+FE+N+ ++ L+K    H RTKHI +R+H +RE +  G + L+Y
Sbjct:   53 PDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEY 225          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 9.910e-35
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 3
Query:  108 SDFSTCKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            S +   K I +YL T  D+G+ F G   G  L G+ DA+WA D+D R+STTGYVF  N   ISW S++Q  V  SSTEAEY+A   A +E V+LR+LL+ +G+  + +T ++++N+  + L+K    H RTKHI +++H +RE +    + L+Y
Sbjct:   57 SHWVAAKRILKYLKTTQDVGLVFNGGIKGE-LVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEY 209          
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 132 bits (332), Expect = 2.540e-34
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  126 KCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKSTTGYVFKQNVGTISWCSRKQ*LVTWSSTEAEYVAPGEAGKETVYLRELLRSIGFGCRESTKLFEENKSAVNLSKRSGAHCRTKHIGVRWHGIREWIREGVLALKY 569
            K + RY+    + G+ F GKS    L G+ DADWA D+D R+ST+GYVF+ N  T+SWCS++Q  VT S+TEAEYVA   A +E V+LR LL  IG    + + + E+N+ A+ LSK    H RTKHI V +H +RE + +  + + Y
Sbjct:  127 KRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNY 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31698.8541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5V2B3_9CNID2.230e-3743.62Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
H3G557_PHYRM3.870e-3745.95Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A0J7K4U5_LASNI1.760e-3647.26Integrase core domain protein n=1 Tax=Lasius niger... [more]
H3GB69_PHYRM4.610e-3644.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G5T8_PHYRM8.860e-3644.67Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
UPI00193C89011.130e-3542.95secreted RxLR effector protein 161-like n=1 Tax=So... [more]
UPI001AAD17B13.520e-3545.81secreted RxLR effector protein 161-like n=2 Tax=Ra... [more]
A0A090C2V0_HYAAE7.950e-3541.38RxLR effector candidate protein (Fragment) n=3 Tax... [more]
A0A2P4XPH2_9STRA9.910e-3542.21RxLR effector candidate protein (Fragment) n=1 Tax... [more]
A0A7D9D5L2_PARCT2.540e-3445.27Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31698contigH-paniculata_contig31698:970..1541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue8.1e-10
Seed eggNOG ortholog3641.EOY19734
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size572
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31698.8541.1prot_H-paniculata_contig31698.8541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31698 1074..1286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.6172955-UTR-H-paniculata_contig31698:969..10731622929976.6172955-UTR-H-paniculata_contig31698:969..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31698 970..1073 +
1691481094.5888438-UTR-H-paniculata_contig31698:969..10731691481094.5888438-UTR-H-paniculata_contig31698:969..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31698 970..1073 +
1622929976.640624-UTR-H-paniculata_contig31698:1286..15411622929976.640624-UTR-H-paniculata_contig31698:1286..1541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31698 1287..1541 +
1691481094.6119816-UTR-H-paniculata_contig31698:1286..15411691481094.6119816-UTR-H-paniculata_contig31698:1286..1541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31698 1287..1541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.6283383-CDS-H-paniculata_contig31698:1073..12861622929976.6283383-CDS-H-paniculata_contig31698:1073..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31698 1074..1286 +
1691481094.6024544-CDS-H-paniculata_contig31698:1073..12861691481094.6024544-CDS-H-paniculata_contig31698:1073..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31698 1074..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31698.8541.1

>prot_H-paniculata_contig31698.8541.1 ID=prot_H-paniculata_contig31698.8541.1|Name=mRNA_H-paniculata_contig31698.8541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MSDFSTCKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVDDRKS
TTGYVFKQNVGTISWCSRKQ*
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mRNA from alignment at H-paniculata_contig31698:970..1541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31698.8541.1 ID=mRNA_H-paniculata_contig31698.8541.1|Name=mRNA_H-paniculata_contig31698.8541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig31698:970..1541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGAGTACAGAGGCATGGTAGGATCACTCATGTATGCTTCGACAGGAAC TAGACCTGATGTAGCATACGCGGCACACCAAGCAGCACGTCGTATGGAGG ACCCATGTCGGACTTCAGTACATGCAAATGCATTTTCCGTTATCTCAGTA CTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGT CTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGACGACCGAAA GTCCACAACAGGATACGTTTTCAAACAAAACGTTGGTACGATAAGTTGGT GCTCTAGGAAGCAATAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTAC GTTGCTCCAGGAGAAGCGGGGAAGGAGACAGTATATCTTAGGGAGTTACT AAGATCGATAGGTTTCGGATGCAGGGAGAGCACGAAATTATTTGAGGAGA ACAAGTCAGCTGTCAATCTCAGTAAAAGATCTGGCGCACACTGCAGGACA AAGCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGG AGTATTGGCGTTGAAATACGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig31698:970..1541+

>mRNA_H-paniculata_contig31698.8541.1 ID=mRNA_H-paniculata_contig31698.8541.1|Name=mRNA_H-paniculata_contig31698.8541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig31698:970..1541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGACTTCAGTACATGCAAATGCATTTTCCGTTATCTCAGTACTGT
GCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGACGACCGAAAGTCC
ACAACAGGATACGTTTTCAAACAAAACGTTGGTACGATAAGTTGGTGCTC
TAGGAAGCAATAGATGTCGGACTTCAGTACATGCAAATGCATTTTCCGTT
ATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAAT
GGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGA
CGACCGAAAGTCCACAACAGGATACGTTTTCAAACAAAACGTTGGTACGA
TAAGTTGGTGCTCTAGGAAGCAATAG
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