mRNA_H-paniculata_contig31693.8540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31693.8540.1
Unique NamemRNA_H-paniculata_contig31693.8540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31693.8540.1 vs. uniprot
Match: A0A6H5KZD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.050e-25
Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:    1 APKMLLAREREAGERREAREAGRRVKETDEKKLFSAFRAIELPATRGPDWATIKAYQDLVRKQRTRARAAEIAATSSLPTRMEKHAAMH------------SGAAENDNCSKGRMCRVGEPGAEETEIFRKTDPEEIGIITARRQKR 405
            APK+LLARE EA  RRE R A  + KE +  +L S+FRA EL AT GPDWATIKA+QDLVRKQRTR RAA +AATSSLP RM +HAAM             SG  + +  + GR    G  G          DP +IG +  RRQ+R
Sbjct:  295 APKVLLARETEAALRREQRVAAAKEKEEEGLRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMAQHAAMQAVAEDRASANVRSGVRDTNGDNGGRGSVGGGAGT--------VDPGDIGRVMKRRQER 433
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BLAST of mRNA_H-paniculata_contig31693.8540.1 vs. uniprot
Match: D7G410_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G410_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.400e-18
Identity = 59/110 (53.64%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:   88 EKKLFSAFRAIELPATRGPDWATIKAYQDLVRKQRTRARAAEIAATSSLPTRMEKHAAMHSGAAE--NDNCSKGRMCRVGEPGAEETEI--FRKTDPEEIGIITARRQKR 405
            E +L S+FRA EL AT GPDWATIKA+QDLVRKQRTR RAA +AATSSLP RM +HAAM + A +  + N   G   + GE G   +        DP +IG +  RRQ+R
Sbjct:  280 ELRLSSSFRAKELHATNGPDWATIKAHQDLVRKQRTRDRAAFLAATSSLPARMARHAAMQAVAEDRASANVRSGAGDKSGEHGRRGSMGGGTGTVDPGDIGRVMQRRQER 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31693.8540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZD1_9PHAE6.050e-2551.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G410_ECTSI4.400e-1853.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31693contigH-paniculata_contig31693:1906..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31693.8540.1prot_H-paniculata_contig31693.8540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31693 1915..2431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.3955305-UTR-H-paniculata_contig31693:1905..19141622929976.3955305-UTR-H-paniculata_contig31693:1905..1914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31693 1906..1914 +
1691481094.5558398-UTR-H-paniculata_contig31693:1905..19141691481094.5558398-UTR-H-paniculata_contig31693:1905..1914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31693 1906..1914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.4160378-CDS-H-paniculata_contig31693:1914..20281622929976.4160378-CDS-H-paniculata_contig31693:1914..2028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31693 1915..2028 +
1691481094.5671203-CDS-H-paniculata_contig31693:1914..20281691481094.5671203-CDS-H-paniculata_contig31693:1914..2028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31693 1915..2028 +
1622929976.4465764-CDS-H-paniculata_contig31693:2146..24311622929976.4465764-CDS-H-paniculata_contig31693:2146..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31693 2147..2431 +
1691481094.5759838-CDS-H-paniculata_contig31693:2146..24311691481094.5759838-CDS-H-paniculata_contig31693:2146..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31693 2147..2431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31693.8540.1

>prot_H-paniculata_contig31693.8540.1 ID=prot_H-paniculata_contig31693.8540.1|Name=mRNA_H-paniculata_contig31693.8540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MLLAREREAGERREAREAGRRVKETDEKKLFSAFRAIELPATRGPDWATI
KAYQDLVRKQRTRARAAEIAATSSLPTRMEKHAAMHSGAAENDNCSKGRM
CRVGEPGAEETEIFRKTDPEEIGIITARRQKR*
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mRNA from alignment at H-paniculata_contig31693:1906..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31693.8540.1 ID=mRNA_H-paniculata_contig31693.8540.1|Name=mRNA_H-paniculata_contig31693.8540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=526bp|location=Sequence derived from alignment at H-paniculata_contig31693:1906..2431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACCAAAAATGTTGTTGGCGCGGGAAAGAGAGGCTGGAGAGAGGCGCGA
AGCAAGAGAGGCGGGGCGACGGGTGAAGGAAACAGATGAAAAAAAGCTTT
TCTCCGCGTTCCGCGCGATCGAGGTGGGCTATGAATCACCGTCATTGGTC
GATTGTGTAGTAGGATTCACAGTTGAACTTTGTCATTCTGCAACGATTCT
GTGCATGGTCATCACTCTCCTCCCCTCGTTGCTACCTAAAGCTACCAGCC
ACGCGCGGCCCAGACTGGGCCACGATCAAAGCATACCAAGACCTAGTTCG
AAAGCAGCGTACAAGAGCCAGAGCGGCCGAAATAGCAGCCACTTCCTCCC
TTCCTACTCGCATGGAAAAACATGCTGCAATGCATTCGGGCGCCGCTGAG
AATGACAACTGCTCGAAGGGACGGATGTGCAGAGTAGGGGAACCGGGCGC
AGAAGAGACGGAGATATTCAGGAAAACAGATCCAGAGGAAATTGGGATAA
TCACGGCTAGACGGCAAAAAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31693:1906..2431+

>mRNA_H-paniculata_contig31693.8540.1 ID=mRNA_H-paniculata_contig31693.8540.1|Name=mRNA_H-paniculata_contig31693.8540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig31693:1906..2431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTTGGCGCGGGAAAGAGAGGCTGGAGAGAGGCGCGAAGCAAGAGA
GGCGGGGCGACGGGTGAAGGAAACAGATGAAAAAAAGCTTTTCTCCGCGT
TCCGCGCGATCGAGATGTTGTTGGCGCGGGAAAGAGAGGCTGGAGAGAGG
CGCGAAGCAAGAGAGGCGGGGCGACGGGTGAAGGAAACAGATGAAAAAAA
GCTTTTCTCCGCGTTCCGCGCGATCGAGCTACCAGCCACGCGCGGCCCAG
ACTGGGCCACGATCAAAGCATACCAAGACCTAGTTCGAAAGCAGCGTACA
AGAGCCAGAGCGGCCGAAATAGCAGCCACTTCCTCCCTTCCTACTCGCAT
GGAAAAACATGCTGCAATGCATTCGGGCGCCGCTGAGAATGACAACTGCT
CGAAGGGACGGATGTGCAGAGTAGGGGAACCGGGCGCAGAAGAGACGGAG
ATATTCAGGAAAACAGATCCAGAGGAAATTGGGATAATCACGGCTAGACG
GCAAAAAAGGTGACTACCAGCCACGCGCGGCCCAGACTGGGCCACGATCA
AAGCATACCAAGACCTAGTTCGAAAGCAGCGTACAAGAGCCAGAGCGGCC
GAAATAGCAGCCACTTCCTCCCTTCCTACTCGCATGGAAAAACATGCTGC
AATGCATTCGGGCGCCGCTGAGAATGACAACTGCTCGAAGGGACGGATGT
GCAGAGTAGGGGAACCGGGCGCAGAAGAGACGGAGATATTCAGGAAAACA
GATCCAGAGGAAATTGGGATAATCACGGCTAGACGGCAAAAAAGGTGA
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