mRNA_H-paniculata_contig3169.8539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: D8LLD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD4_ECTSI) HSP 1 Score: 318 bits (814), Expect = 7.220e-105 Identity = 151/222 (68.02%), Postives = 178/222 (80.18%), Query Frame = 1
Query: 10 VTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVF 675
V F ++K+M P++VYFEL KFYQNHRSYVKSRS +QL GGV + C PL + +++LNPCGLVANSMFND+IVV +AP+PY+ LSP+EYM E ISW +DRD F+QPDGFV ECA SCE CLGS++YSDC S DRTG YKYWYP+E+ TQYLYETYP VISP+DGV +EHFVVWMRTAA STFRNLYGRIEHDLVAPA +TFNVTA+ + F
Sbjct: 66 VKFSIDKDMKGPIYVYFELRKFYQNHRSYVKSRSFDQLKGGVPGAGICSPLESIDTLDLNPCGLVANSMFNDVIVVDSAPEPYESLSPYEYMDEGGISWVTDRDGDFSQPDGFVRAECAPSVSCEDCLGSAAYSDCGS-FTDRTGTSYKYWYPDEASTQYLYETYPNVISPVDGVTDEHFVVWMRTAALSTFRNLYGRIEHDLVAPAEITFNVTASENLCAF 286
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6H5JEE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEE3_9PHAE) HSP 1 Score: 281 bits (719), Expect = 2.290e-89 Identity = 143/285 (50.18%), Postives = 188/285 (65.96%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAG-GVTASDTCDPL---TGLGSV-ELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
C V ++++ M P++VY+EL+ ++QNHR YVKSRS+ QL G V + C+PL T G + +LNPCGL+ANSMFNDII + + M E DISW SDR+ F QP GF EC++ SC CLG S YS C H D+ TG EYK+WYP++ TQ+LYETYP V+SPI+GV+NEHF+VWMRTA FR LYGRI+ + AP LTFN+TANF+V F G KSL+++ S +G N LG A+IA+G L GL L K ++PR+ D++FL
Sbjct: 106 CSVQIEVDEFMKPPIYVYYELNNYFQNHRRYVKSRSSLQLLGEAVEPDENCEPLERTTVDGEILDLNPCGLIANSMFNDIIELT---------TEGVTMSEKDISWKSDRETRFKQPPGFTFAECSANTSCSDCLGGSKYSSCGDHTDESTGTEYKFWYPDDETTQFLYETYPGVVSPIEGVLNEHFIVWMRTAGLPRFRKLYGRIDEQIEAPQVLTFNITANFFVGDFSGEKSLVVSNLSLMGARNPYLGIAYIALGSLSLAIGLAFLIKHLSNPRKLGDTRFL 381
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A835Z5R6_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R6_9STRA) HSP 1 Score: 264 bits (674), Expect = 7.970e-83 Identity = 135/273 (49.45%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPR 819
C VT ++ M APV+VY++L FYQ+HR YV S S +QL G D+ C PL G LNPCGL+ANSMFND+ V+AAP P+D +P YM ET I+W +D D F+QPDGFV C SC CLG+ Y+DC D G + Y+YP ++ TQYL+ETYP+V+SP++GV NEHF+VWMRTAA TFR LYG I+ D+ + F++ ANF VA F G KS++LA+ VG N LG A++ +GG L+ GL++L+K PR
Sbjct: 91 CTVTISVKDKMEAPVYVYYQLDNFYQSHRRYVASLSPSQLMGSNVQGDSLCSPLKKNGDQWLNPCGLIANSMFNDVFTVSAAPAPFDATAPAAYMRETGIAWPNDID-RFSQPDGFVKKSCGGTASCASCLGAG-YTDCGV-ATDADGKRWAYYYPNDATTQYLHETYPKVVSPLEGVTNEHFMVWMRTAALPTFRKLYGIIDSDIPGGWDVQFDINANFLVANFNGKKSIVLASSVGVGGFNGALGIAYLVIGGVLLLVGLLLLAKVLLKPR 360
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6S9FRN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRN7_HETAK) HSP 1 Score: 244 bits (623), Expect = 3.820e-75 Identity = 137/286 (47.90%), Postives = 173/286 (60.49%), Query Frame = 1
Query: 1 QCHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT--CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVE------CASIN-SCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFAD 831
+C +TF ++K+M PV++Y++L+ FYQNHR YV SR + QL G +DT C PLT GS +LNPCGLVANS+FND+I + A+ + L ET I+W SDR FAQPDGF V C + +CE SS Y DC + D Y Y+YPE QYLYET+PEVI+PI+GV NEHF+VWMRTAA FR LYG I+ DL +TF VTAN+ V+ F GTKS+ILA S G NAVLG +I G L + K + PR A+
Sbjct: 84 ECSLTFNIDKDMDGPVYLYYQLTNFYQNHRRYVSSRYDAQLQGSTLHADTDYCSPLTSNGSQDLNPCGLVANSLFNDVIALEASTNAAVALD------ETGITWDSDRATKFAQPDGFAYVTLGDDAGCTELPCTCETAFDSSDYDDCEFYTDAEN-TTYAYYYPENDEIQYLYETFPEVINPIEGVTNEHFIVWMRTAALPKFRKLYGIIDTDLTEGDEITFKVTANYLVSSFDGTKSIILANASWFGGKNAVLGMVYIVAGVVSLSLAIAFGIKQKLQPRALAN 362
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI) HSP 1 Score: 232 bits (592), Expect = 1.660e-70 Identity = 125/287 (43.55%), Postives = 173/287 (60.28%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT--CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCL---------GSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFAD 831
C +TF +EK++ P +VY+EL+ FYQNH +YV S ++QL G + SD CDPL G++ L+PCGL+AN++FNDI V++ + M ETDI+W SD D F QPDGFV+ C + C CL G +++ C + D T Y+YP+E TQYLYET+PEVISP+DGV NEHF+VWMR + S+FR LYGRI+ L TL+F+V+ NF V + GTKS+I++ + G N G + ++GG L+ L+I K PR D
Sbjct: 92 CTITFDVEKDIPGPAYVYYELTNFYQNHATYVASVGSSQLLGSTSTSDIDDCDPLIYNGTLVLHPCGLIANTLFNDIFTVSSG----------QTMEETDIAWDSDVADKFVQPDGFVTTACEDEDGCVACLTDAGLTDSDGGTTFEGCG--VTDSTA----YYYPDEDTTQYLYETFPEVISPLDGVKNEHFIVWMRVSGLSSFRKLYGRIDDGLNEGDTLSFDVSNNFIVDYYDGTKSIIVSNTNDFGGRNLYWGQSLPSIGGVVLVLALLIAIKQLVWPRTMGD 362
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A836CGC5_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC5_9STRA) HSP 1 Score: 226 bits (577), Expect = 2.700e-68 Identity = 122/286 (42.66%), Postives = 169/286 (59.09%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGG-VTASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSD-----CSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
C ++F L K++ AP++VY+EL FY NHR YV+S S +QL G ++ C PL G + L+PCGL+AN++FNDII V + + M ET I+W +D D F QP GFV+ CA+ + C CL ++ SD C D +G Y YWYP+E QYLYET+P+VISP++GV NEHF+VWMR A FR YG+I L T+TFNV NF V+ FGG+KSL+++ S +G N +F+ +G L LV++ +PR D + L
Sbjct: 91 CTISFTLTKDLPAPIYVYYELHNFYSNHRKYVQSFSQDQLLGSQISDLSACTPLERNGDLTLSPCGLIANTLFNDIITVTS----------DQVMEETGIAWNTDLD-KFEQPHGFVTTACAATDECASCLQAAYNSDDDYDGCGI-ATDASGTSYAYWYPDEDKIQYLYETFPDVISPLEGVKNEHFMVWMRVAGLRQFRKPYGKISQSLAKGTTVTFNVVNNFLVSSFGGSKSLVMSHVSDLGAPNVYWPQSFLVIGFLVLGLALVVILVQTCAPRPLGDVKML 364
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A7S3PBZ4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBZ4_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.240e-67 Identity = 125/296 (42.23%), Postives = 171/296 (57.77%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-----CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINS-CEG--CLGSSSYSDCSS--------HIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
C + F++ ++M+ P+ V++EL+ F+QNHRSY +SR + QL G V D C PL LG++ LNPCG+ AN+ FND+ + D + +M E I+W SD + FAQP+GF + C + + C+ C G D + H ++ G+ Y+Y+YPE+ TQYLYETY +ISP++GV NEHFVVWMR A TFR LYG I + TL FNVTAN+ V+ F G+KSLIL+T + G N LG +F VG CL AG K PR+ AD L
Sbjct: 100 CQIRFEVTEDMSPPILVHYELTNFHQNHRSYYQSRDDYQLLGRVGEQDPVSKQRCKPLNELGNITLNPCGVTANTFFNDVFKLVEGKDA---MGIDLFMSEEGIAWQSDLEYAFAQPEGFRAALCPNNGTLCDETCCTGVDEDGDFAGLEWSCKKPHFEESEGVCYRYYYPEDEKTQYLYETYENIISPLEGVTNEHFVVWMRIATNPTFRKLYGWINEPIPKGQTLVFNVTANYVVSRFRGSKSLILSTNNIFGGRNPYLGASFYGVGFFCLAAGTFFALKQTLRPRKLADPNHL 392
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6U1P719_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1P719_CYCTE) HSP 1 Score: 217 bits (553), Expect = 1.180e-64 Identity = 118/285 (41.40%), Postives = 169/285 (59.30%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVT----ASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFLE 846
C +TF K+M P+ V++E+ FYQNHR Y +SR N QL G +T ++ C+PL LG ++NPCGL+AN+ FNDII + + D M+E I+W SD F QP+GF + C SC C G+ C+ + G ++Y+YPE++ TQYLYETYP++I+P++GV NEHF+VWMR AA FR LYG I + A + +FN+ N+ V F G KSL+++T + G N G F+AVG C + G+ +K PR+ AD Q+L+
Sbjct: 94 CTITFTALKDMEPPILVHYEIENFYQNHRQYYRSRDNYQLYGSLTQDSLSAQLCEPLNFLGGKKINPCGLMANTFFNDIIELQSG---LDDQGNDLTMIEKGIAWQSDIAYKFRQPNGFKAEICPQNESC--CAGAEW--SCTVY----NGQLHRYFYPEDNTTQYLYETYPDIINPVEGVTNEHFIVWMRAAALPKFRKLYGWINQRITARSNFSFNIVNNWEVTSFDGRKSLVVSTTNIFGGKNDWAGPFFVAVGVFCAVCGVFFAAKQLIRPRKTADKQYLQ 367
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: B7FWW6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWW6_PHATC) HSP 1 Score: 214 bits (546), Expect = 2.130e-63 Identity = 123/291 (42.27%), Postives = 163/291 (56.01%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-----CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEY-MVETDISWASDRDDTFAQPDGFVSVEC----ASINSCEGCLGSSSYSDCSS-HIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
C + F + M AP+ +++EL+ F+QNHRSY SR + QL G V D+ C PL LG+ LNPCGL AN+MFND + + D ++ + M+ET I+W SD + + QP+GF EC CE + C + + D +T + Y YP + TQYLYETYP+VISPI+GV NEHFVVWMR A + TFR LYG I+ D+ A TL F V AN+ V F G+KSL+++T + G N G F VG CL AG K PR D +L
Sbjct: 98 CFLNFTAPRYMRAPILIHYELTNFHQNHRSYYDSRDDFQLHGRVGNQDSVSRKACQPLNKLGNKTLNPCGLAANTMFNDFFTLESGRD----INRIDLEMLETGIAWKSDIEYMYRQPEGFEYAECEPNACDSTCCERTTENGERFSCGAPYFDRKTDKCFAYHYPLQDETQYLYETYPDVISPIEGVTNEHFVVWMRIATQPTFRKLYGWIDQDIPAGETLRFRVNANYVVTRFQGSKSLLISTNNIFGGRNPYFGSFFFWVGIFCLAAGTFFAFKHAFRPRRLGDGNYL 384
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A7S3H696_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H696_9STRA) HSP 1 Score: 213 bits (541), Expect = 5.860e-63 Identity = 122/287 (42.51%), Postives = 170/287 (59.23%), Query Frame = 1
Query: 4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAG-GVTASD---TCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVS-VECASINSC--EGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
C +TF +++ P++VY+EL FYQNHR YV SR + QLAG ++ +D TC+ GS +NPCGL+ANS+F D+ + A +S M ++I+WASD++ F QP GF S V ++ N+C EG DC + D TG +Y + YP ++ QYLYE+YP ISP+ GV ++HF VWMR AA FR LYG+I+H+ TLTF VTANF V F G+KSL+++ G N LG A++ VG LM L+ + K +PR AD+ L
Sbjct: 84 CSLTFNFDEDADGPIYVYYELENFYQNHRRYVSSRDSLQLAGEAISKADLQTTCESFINNGSQLINPCGLIANSLFTDVFTLDNAASNPSTVS----MDSSEIAWASDKE-KFKQPQGFQSKVVTSTANTCAQEGLPD-----DCKYYQDPATGTQYYFHYPNDNTVQYLYESYPNHISPVVGVTDQHFKVWMRPAALPQFRKLYGKIDHNYKKGDTLTFTVTANFEVESFDGSKSLLISNLGEFGGKNPFLGVAYVVVGSISLMFALLFVVKQTVAPRAKADASLL 360 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3169.8539.1 >prot_H-paniculata_contig3169.8539.1 ID=prot_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp MTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDTCDPLTGLGSVEback to top mRNA from alignment at H-paniculata_contig3169:337..4587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3169.8539.1 ID=mRNA_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4251bp|location=Sequence derived from alignment at H-paniculata_contig3169:337..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3169:337..4587+ >mRNA_H-paniculata_contig3169.8539.1 ID=mRNA_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig3169:337..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |