mRNA_H-paniculata_contig3169.8539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3169.8539.1
Unique NamemRNA_H-paniculata_contig3169.8539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: D8LLD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD4_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 7.220e-105
Identity = 151/222 (68.02%), Postives = 178/222 (80.18%), Query Frame = 1
Query:   10 VTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVF 675
            V F ++K+M  P++VYFEL KFYQNHRSYVKSRS +QL GGV  +  C PL  + +++LNPCGLVANSMFND+IVV +AP+PY+ LSP+EYM E  ISW +DRD  F+QPDGFV  ECA   SCE CLGS++YSDC S   DRTG  YKYWYP+E+ TQYLYETYP VISP+DGV +EHFVVWMRTAA STFRNLYGRIEHDLVAPA +TFNVTA+  +  F
Sbjct:   66 VKFSIDKDMKGPIYVYFELRKFYQNHRSYVKSRSFDQLKGGVPGAGICSPLESIDTLDLNPCGLVANSMFNDVIVVDSAPEPYESLSPYEYMDEGGISWVTDRDGDFSQPDGFVRAECAPSVSCEDCLGSAAYSDCGS-FTDRTGTSYKYWYPDEASTQYLYETYPNVISPVDGVTDEHFVVWMRTAALSTFRNLYGRIEHDLVAPAEITFNVTASENLCAF 286          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6H5JEE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEE3_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 2.290e-89
Identity = 143/285 (50.18%), Postives = 188/285 (65.96%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAG-GVTASDTCDPL---TGLGSV-ELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
            C V  ++++ M  P++VY+EL+ ++QNHR YVKSRS+ QL G  V   + C+PL   T  G + +LNPCGL+ANSMFNDII +          +    M E DISW SDR+  F QP GF   EC++  SC  CLG S YS C  H D+ TG EYK+WYP++  TQ+LYETYP V+SPI+GV+NEHF+VWMRTA    FR LYGRI+  + AP  LTFN+TANF+V  F G KSL+++  S +G  N  LG A+IA+G   L  GL  L K  ++PR+  D++FL
Sbjct:  106 CSVQIEVDEFMKPPIYVYYELNNYFQNHRRYVKSRSSLQLLGEAVEPDENCEPLERTTVDGEILDLNPCGLIANSMFNDIIELT---------TEGVTMSEKDISWKSDRETRFKQPPGFTFAECSANTSCSDCLGGSKYSSCGDHTDESTGTEYKFWYPDDETTQFLYETYPGVVSPIEGVLNEHFIVWMRTAGLPRFRKLYGRIDEQIEAPQVLTFNITANFFVGDFSGEKSLVVSNLSLMGARNPYLGIAYIALGSLSLAIGLAFLIKHLSNPRKLGDTRFL 381          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A835Z5R6_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R6_9STRA)

HSP 1 Score: 264 bits (674), Expect = 7.970e-83
Identity = 135/273 (49.45%), Postives = 178/273 (65.20%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPR 819
            C VT  ++  M APV+VY++L  FYQ+HR YV S S +QL G     D+ C PL   G   LNPCGL+ANSMFND+  V+AAP P+D  +P  YM ET I+W +D D  F+QPDGFV   C    SC  CLG+  Y+DC     D  G  + Y+YP ++ TQYL+ETYP+V+SP++GV NEHF+VWMRTAA  TFR LYG I+ D+     + F++ ANF VA F G KS++LA+   VG  N  LG A++ +GG  L+ GL++L+K    PR
Sbjct:   91 CTVTISVKDKMEAPVYVYYQLDNFYQSHRRYVASLSPSQLMGSNVQGDSLCSPLKKNGDQWLNPCGLIANSMFNDVFTVSAAPAPFDATAPAAYMRETGIAWPNDID-RFSQPDGFVKKSCGGTASCASCLGAG-YTDCGV-ATDADGKRWAYYYPNDATTQYLHETYPKVVSPLEGVTNEHFMVWMRTAALPTFRKLYGIIDSDIPGGWDVQFDINANFLVANFNGKKSIVLASSVGVGGFNGALGIAYLVIGGVLLLVGLLLLAKVLLKPR 360          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6S9FRN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRN7_HETAK)

HSP 1 Score: 244 bits (623), Expect = 3.820e-75
Identity = 137/286 (47.90%), Postives = 173/286 (60.49%), Query Frame = 1
Query:    1 QCHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT--CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVE------CASIN-SCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFAD 831
            +C +TF ++K+M  PV++Y++L+ FYQNHR YV SR + QL G    +DT  C PLT  GS +LNPCGLVANS+FND+I + A+ +    L       ET I+W SDR   FAQPDGF  V       C  +  +CE    SS Y DC  + D      Y Y+YPE    QYLYET+PEVI+PI+GV NEHF+VWMRTAA   FR LYG I+ DL     +TF VTAN+ V+ F GTKS+ILA  S  G  NAVLG  +I  G   L   +    K +  PR  A+
Sbjct:   84 ECSLTFNIDKDMDGPVYLYYQLTNFYQNHRRYVSSRYDAQLQGSTLHADTDYCSPLTSNGSQDLNPCGLVANSLFNDVIALEASTNAAVALD------ETGITWDSDRATKFAQPDGFAYVTLGDDAGCTELPCTCETAFDSSDYDDCEFYTDAEN-TTYAYYYPENDEIQYLYETFPEVINPIEGVTNEHFIVWMRTAALPKFRKLYGIIDTDLTEGDEITFKVTANYLVSSFDGTKSIILANASWFGGKNAVLGMVYIVAGVVSLSLAIAFGIKQKLQPRALAN 362          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.660e-70
Identity = 125/287 (43.55%), Postives = 173/287 (60.28%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT--CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCL---------GSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFAD 831
            C +TF +EK++  P +VY+EL+ FYQNH +YV S  ++QL G  + SD   CDPL   G++ L+PCGL+AN++FNDI  V++           + M ETDI+W SD  D F QPDGFV+  C   + C  CL         G +++  C   + D T     Y+YP+E  TQYLYET+PEVISP+DGV NEHF+VWMR +  S+FR LYGRI+  L    TL+F+V+ NF V  + GTKS+I++  +  G  N   G +  ++GG  L+  L+I  K    PR   D
Sbjct:   92 CTITFDVEKDIPGPAYVYYELTNFYQNHATYVASVGSSQLLGSTSTSDIDDCDPLIYNGTLVLHPCGLIANTLFNDIFTVSSG----------QTMEETDIAWDSDVADKFVQPDGFVTTACEDEDGCVACLTDAGLTDSDGGTTFEGCG--VTDSTA----YYYPDEDTTQYLYETFPEVISPLDGVKNEHFIVWMRVSGLSSFRKLYGRIDDGLNEGDTLSFDVSNNFIVDYYDGTKSIIVSNTNDFGGRNLYWGQSLPSIGGVVLVLALLIAIKQLVWPRTMGD 362          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A836CGC5_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.700e-68
Identity = 122/286 (42.66%), Postives = 169/286 (59.09%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGG-VTASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSD-----CSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
            C ++F L K++ AP++VY+EL  FY NHR YV+S S +QL G  ++    C PL   G + L+PCGL+AN++FNDII V +           + M ET I+W +D D  F QP GFV+  CA+ + C  CL ++  SD     C     D +G  Y YWYP+E   QYLYET+P+VISP++GV NEHF+VWMR A    FR  YG+I   L    T+TFNV  NF V+ FGG+KSL+++  S +G  N     +F+ +G   L   LV++     +PR   D + L
Sbjct:   91 CTISFTLTKDLPAPIYVYYELHNFYSNHRKYVQSFSQDQLLGSQISDLSACTPLERNGDLTLSPCGLIANTLFNDIITVTS----------DQVMEETGIAWNTDLD-KFEQPHGFVTTACAATDECASCLQAAYNSDDDYDGCGI-ATDASGTSYAYWYPDEDKIQYLYETFPDVISPLEGVKNEHFMVWMRVAGLRQFRKPYGKISQSLAKGTTVTFNVVNNFLVSSFGGSKSLVMSHVSDLGAPNVYWPQSFLVIGFLVLGLALVVILVQTCAPRPLGDVKML 364          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A7S3PBZ4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBZ4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.240e-67
Identity = 125/296 (42.23%), Postives = 171/296 (57.77%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-----CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINS-CEG--CLGSSSYSDCSS--------HIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
            C + F++ ++M+ P+ V++EL+ F+QNHRSY +SR + QL G V   D      C PL  LG++ LNPCG+ AN+ FND+  +    D    +    +M E  I+W SD +  FAQP+GF +  C +  + C+   C G     D +         H ++  G+ Y+Y+YPE+  TQYLYETY  +ISP++GV NEHFVVWMR A   TFR LYG I   +    TL FNVTAN+ V+ F G+KSLIL+T +  G  N  LG +F  VG  CL AG     K    PR+ AD   L
Sbjct:  100 CQIRFEVTEDMSPPILVHYELTNFHQNHRSYYQSRDDYQLLGRVGEQDPVSKQRCKPLNELGNITLNPCGVTANTFFNDVFKLVEGKDA---MGIDLFMSEEGIAWQSDLEYAFAQPEGFRAALCPNNGTLCDETCCTGVDEDGDFAGLEWSCKKPHFEESEGVCYRYYYPEDEKTQYLYETYENIISPLEGVTNEHFVVWMRIATNPTFRKLYGWINEPIPKGQTLVFNVTANYVVSRFRGSKSLILSTNNIFGGRNPYLGASFYGVGFFCLAAGTFFALKQTLRPRKLADPNHL 392          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A6U1P719_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1P719_CYCTE)

HSP 1 Score: 217 bits (553), Expect = 1.180e-64
Identity = 118/285 (41.40%), Postives = 169/285 (59.30%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVT----ASDTCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFLE 846
            C +TF   K+M  P+ V++E+  FYQNHR Y +SR N QL G +T    ++  C+PL  LG  ++NPCGL+AN+ FNDII + +     D       M+E  I+W SD    F QP+GF +  C    SC  C G+     C+ +     G  ++Y+YPE++ TQYLYETYP++I+P++GV NEHF+VWMR AA   FR LYG I   + A +  +FN+  N+ V  F G KSL+++T +  G  N   G  F+AVG  C + G+   +K    PR+ AD Q+L+
Sbjct:   94 CTITFTALKDMEPPILVHYEIENFYQNHRQYYRSRDNYQLYGSLTQDSLSAQLCEPLNFLGGKKINPCGLMANTFFNDIIELQSG---LDDQGNDLTMIEKGIAWQSDIAYKFRQPNGFKAEICPQNESC--CAGAEW--SCTVY----NGQLHRYFYPEDNTTQYLYETYPDIINPVEGVTNEHFIVWMRAAALPKFRKLYGWINQRITARSNFSFNIVNNWEVTSFDGRKSLVVSTTNIFGGKNDWAGPFFVAVGVFCAVCGVFFAAKQLIRPRKTADKQYLQ 367          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: B7FWW6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWW6_PHATC)

HSP 1 Score: 214 bits (546), Expect = 2.130e-63
Identity = 123/291 (42.27%), Postives = 163/291 (56.01%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDT-----CDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEY-MVETDISWASDRDDTFAQPDGFVSVEC----ASINSCEGCLGSSSYSDCSS-HIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
            C + F   + M AP+ +++EL+ F+QNHRSY  SR + QL G V   D+     C PL  LG+  LNPCGL AN+MFND   + +  D    ++  +  M+ET I+W SD +  + QP+GF   EC         CE    +     C + + D +T   + Y YP +  TQYLYETYP+VISPI+GV NEHFVVWMR A + TFR LYG I+ D+ A  TL F V AN+ V  F G+KSL+++T +  G  N   G  F  VG  CL AG     K    PR   D  +L
Sbjct:   98 CFLNFTAPRYMRAPILIHYELTNFHQNHRSYYDSRDDFQLHGRVGNQDSVSRKACQPLNKLGNKTLNPCGLAANTMFNDFFTLESGRD----INRIDLEMLETGIAWKSDIEYMYRQPEGFEYAECEPNACDSTCCERTTENGERFSCGAPYFDRKTDKCFAYHYPLQDETQYLYETYPDVISPIEGVTNEHFVVWMRIATQPTFRKLYGWIDQDIPAGETLRFRVNANYVVTRFQGSKSLLISTNNIFGGRNPYFGSFFFWVGIFCLAAGTFFAFKHAFRPRRLGDGNYL 384          
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Match: A0A7S3H696_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H696_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.860e-63
Identity = 122/287 (42.51%), Postives = 170/287 (59.23%), Query Frame = 1
Query:    4 CHVTFKLEKNMTAPVFVYFELSKFYQNHRSYVKSRSNNQLAG-GVTASD---TCDPLTGLGSVELNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFAQPDGFVS-VECASINSC--EGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLTQYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPATLTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAGLVILSKFQASPREFADSQFL 843
            C +TF  +++   P++VY+EL  FYQNHR YV SR + QLAG  ++ +D   TC+     GS  +NPCGL+ANS+F D+  +  A      +S    M  ++I+WASD++  F QP GF S V  ++ N+C  EG        DC  + D  TG +Y + YP ++  QYLYE+YP  ISP+ GV ++HF VWMR AA   FR LYG+I+H+     TLTF VTANF V  F G+KSL+++     G  N  LG A++ VG   LM  L+ + K   +PR  AD+  L
Sbjct:   84 CSLTFNFDEDADGPIYVYYELENFYQNHRRYVSSRDSLQLAGEAISKADLQTTCESFINNGSQLINPCGLIANSLFTDVFTLDNAASNPSTVS----MDSSEIAWASDKE-KFKQPQGFQSKVVTSTANTCAQEGLPD-----DCKYYQDPATGTQYYFHYPNDNTVQYLYESYPNHISPVVGVTDQHFKVWMRPAALPQFRKLYGKIDHNYKKGDTLTFTVTANFEVESFDGSKSLLISNLGEFGGKNPFLGVAYVVVGSISLMFALLFVVKQTVAPRAKADASLL 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3169.8539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLD4_ECTSI7.220e-10568.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEE3_9PHAE2.290e-8950.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5R6_9STRA7.970e-8349.45CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6S9FRN7_HETAK3.820e-7547.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LE53_ECTSI1.660e-7043.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGC5_9STRA2.700e-6842.66CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S3PBZ4_9STRA1.240e-6742.23Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U1P719_CYCTE1.180e-6441.40Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7FWW6_PHATC2.130e-6342.27Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3H696_9STRA5.860e-6342.51Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3169contigH-paniculata_contig3169:337..4587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.8
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D8LLD4
Preferred nameTMEM30B
KEGG koko:K08817
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0010008,GO:0010570,GO:0010720,GO:0010876,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015247,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015893,GO:0015914,GO:0015917,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022857,GO:0023052,GO:0030141,GO:0030154,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031344,GO:0031346,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034204,GO:0034220,GO:0034613,GO:0035577,GO:0035579,GO:0036010,GO:0036230,GO:0040008,GO:0042119,GO:0042221,GO:0042493,GO:0042581,GO:0042582,GO:0042623,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043492,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045332,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0051960,GO:0051962,GO:0055085,GO:0060284,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070861,GO:0070863,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090087,GO:0090316,GO:0097035,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0099503,GO:0120035,GO:1902494,GO:1903827,GO:1903829,GO:1904949,GO:1904951,GO:1990351,GO:1990530,GO:1990531,GO:2000026
EggNOG free text desc.aminophospholipid transmembrane transporter activity
EggNOG OGsCOG5035@1,KOG2952@2759
Ec32 ortholog descriptionCDC50/LEM3 family
Ec32 orthologEc-27_002220.1
EC2.7.11.22
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons7
Model size971
Cds size837
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.217677-UTR-H-paniculata_contig3169:336..3691622929976.217677-UTR-H-paniculata_contig3169:336..369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3169 337..369 +
1691481094.4666352-UTR-H-paniculata_contig3169:336..3691691481094.4666352-UTR-H-paniculata_contig3169:336..369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3169 337..369 +
1622929976.3509774-UTR-H-paniculata_contig3169:4486..45871622929976.3509774-UTR-H-paniculata_contig3169:4486..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3169 4487..4587 +
1691481094.546121-UTR-H-paniculata_contig3169:4486..45871691481094.546121-UTR-H-paniculata_contig3169:4486..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3169 4487..4587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.2352464-CDS-H-paniculata_contig3169:369..4681622929976.2352464-CDS-H-paniculata_contig3169:369..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 370..468 +
1691481094.479465-CDS-H-paniculata_contig3169:369..4681691481094.479465-CDS-H-paniculata_contig3169:369..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 370..468 +
1622929976.2537603-CDS-H-paniculata_contig3169:986..11671622929976.2537603-CDS-H-paniculata_contig3169:986..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 987..1167 +
1691481094.4893205-CDS-H-paniculata_contig3169:986..11671691481094.4893205-CDS-H-paniculata_contig3169:986..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 987..1167 +
1622929976.2766943-CDS-H-paniculata_contig3169:1996..21251622929976.2766943-CDS-H-paniculata_contig3169:1996..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 1997..2125 +
1691481094.4981291-CDS-H-paniculata_contig3169:1996..21251691481094.4981291-CDS-H-paniculata_contig3169:1996..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 1997..2125 +
1622929976.293143-CDS-H-paniculata_contig3169:2417..24851622929976.293143-CDS-H-paniculata_contig3169:2417..2485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 2418..2485 +
1691481094.5068398-CDS-H-paniculata_contig3169:2417..24851691481094.5068398-CDS-H-paniculata_contig3169:2417..2485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 2418..2485 +
1622929976.3086078-CDS-H-paniculata_contig3169:2714..28591622929976.3086078-CDS-H-paniculata_contig3169:2714..2859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 2715..2859 +
1691481094.515758-CDS-H-paniculata_contig3169:2714..28591691481094.515758-CDS-H-paniculata_contig3169:2714..2859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 2715..2859 +
1622929976.3225029-CDS-H-paniculata_contig3169:3878..40411622929976.3225029-CDS-H-paniculata_contig3169:3878..4041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 3879..4041 +
1691481094.5285287-CDS-H-paniculata_contig3169:3878..40411691481094.5285287-CDS-H-paniculata_contig3169:3878..4041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 3879..4041 +
1622929976.334407-CDS-H-paniculata_contig3169:4434..44861622929976.334407-CDS-H-paniculata_contig3169:4434..4486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 4435..4486 +
1691481094.5371156-CDS-H-paniculata_contig3169:4434..44861691481094.5371156-CDS-H-paniculata_contig3169:4434..4486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3169 4435..4486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3169.8539.1prot_H-paniculata_contig3169.8539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3169 370..4486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3169.8539.1

>prot_H-paniculata_contig3169.8539.1 ID=prot_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MTAPVFVYFELSKFYQNHRSYVKSRSNNQLAGGVTASDTCDPLTGLGSVE
LNPCGLVANSMFNDIIVVAAAPDPYDPLSPHEYMVETDISWASDRDDTFA
QPDGFVSVECASINSCEGCLGSSSYSDCSSHIDDRTGLEYKYWYPEESLT
QYLYETYPEVISPIDGVMNEHFVVWMRTAARSTFRNLYGRIEHDLVAPAT
LTFNVTANFYVAVFGGTKSLILATESPVGNTNAVLGGAFIAVGGACLMAG
LVILSKFQASPREFADSQFLETVSTSKP*
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mRNA from alignment at H-paniculata_contig3169:337..4587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3169.8539.1 ID=mRNA_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4251bp|location=Sequence derived from alignment at H-paniculata_contig3169:337..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGCCATGTGACGTTCAAGTTGGAGAAAAACATGACTGCTCCAGTCTT CGTGTACTTCGAGCTCAGCAAATTCTATCAGAACCATCGAAGTTACGTCA AGTCTAGGAGCAACAATCAACTGGCCGGCGGCGTGAGTCAATGTTTGCTG TGTCATTCATACGGTCGGCATGCACACTACATACCATACTATTTAGCTAT GGTGTTGCGTAATTGTGCTATCCTTTAAGTGCCTAGTAGTATGTGTAGTT TCATTGACGTTTTCGGGGCGCCATCACCTGCGTGGTCTCCATCACCCGAG CTATACGTGATAGACCTGGAGAGGCGCTCGCGCTACTAGTGTAGACCATA TTGTAGAACCTAGTCCTAGGCCACTTTGATACAGGATCCTCCTGCTGTGT TCAATGAACGTTGTTACGGGGGCTACTGCAAACCTGGAACATCGGAGTGG AAAATGCTATATTGAGTATACTATACTAGGAGGATAGTAACAGTCCACGA TCACTAGCGTTATGTGCAGACTGTAACCGGAGGCAGTACACTGCAGCACT TCGAGGTTCAACCAGGCACAACAACCTAGAGCATGTAAGACTACATCGAG CACGGCATCAACACGACGTGTCGTTCGCGGTATTGCGTGAACTCAACTAG GTTACAGCTTCTGACACCTGCGATCCGCTCACGGGATTGGGTTCAGTCGA ACTGAATCCGTGTGGGCTGGTGGCGAACAGCATGTTCAACGATATCATCG TCGTGGCTGCGGCTCCCGACCCTTACGATCCGCTGTCGCCACACGAGTAC ATGGTTGAGACGGATATCTCGTGGGCTAGTGGTGAGAGATGAAGGTTAAG TTGTGATAGTGATTGGAGGCTGTACTCTGTGTTGATTGGCGTTACCAAGT AGTCGTCAGACTCTGCTGTTGAAACCGTAAATAGCATTTGAAACTGTATA CAGGCATATACAATTAGGCAGAGCCTCGCTATTATGACCTACACCCTCTT TTAACTCACCCCCTCGTTAGGTCCCTAGCGAATTATCACGTAACTAGTTT CGTAACACCTCTTCGGCAACGATCAAAGACTGTGAACAATCTTCTCCCGT TCGTGTACCCGGTAAATAAGAACCTGATGTCTAGCCTCAGTTTTACAACT GGCGTCGCCGGTAGGTATCATGCCACGTTACATGCTGGAATTCACTTGCA CTTGTAGCAGACTATATTTTGAGACTTTCAGCTGCCGTGTTTCATCATGA GCGTAACCCTCGGAGTATGGGGATCGTGTTGCGCGGGATAGAACTCAAGC AGCGTCCGCGCATGGATACCATGAACCGTGGACACGAAGGTAGACGCTCC CACCTTACCACGGAACGAACGCCTCCGCAATAAGTGCAAGTTGGTCATCT TGTCATGTCGCGTCAAAACATTTGTTGTGAGCGCAGTATCCGTCCCTCAC CCGCCGCTCGGGTGTTGAGACCTTCGGCATACTTTCACAATATATATGGT TCTGAGTCTAGAAACGATGGCATTTGCGTCCGCAGGCCTTTGGTTTCCAG AGATTTGGGTCGAAGTCACGACGATGGTACCATTCCGTACAACCGGGAAC ACTACTAGCGCACATTCATTCTTCTTTGTTGCTTTGGTGCTTTTACCGTA TTATTTGCAGATCGTGATGACACATTTGCACAGCCAGATGGTTTTGTTTC GGTAGAGTGTGCATCTATCAACAGCTGCGAAGGTTGCCTCGGTTCATCGT CCTACAGTGATTGCTCTAGTCACATAGACGATCGAACAGGTAAGGACTGT GACACATCAGCGACCACCAATATTTTGAGGGCCTGCGTAACGCAACGGGC ACAAAAACTTCTAAAGCATCATACAACAGTGAGTCAAGGCAGAAACGTGG TGAGAACTTGACCCAAGCTGCAGCTAATACTTGCGTTTCCTTGCAGTACG GAAGAATAAAAAATCCTGAGGTACATAAAAAAAGAAAGATCTGGACCCTA TCAGATGTTTCGATGCTTGCATACCGCCGACGCGGTGGCGCAGAATTCAT ACATGTTCCTCACAACTCCCTCCGTACTTAGGTCTGGAGTACAAGTATTG GTACCCGGAGGAGTCGTTGACCCAGTATCTTTACGAAACATATCCGGAGG TGAGATATCGATATGAGATATCGATGTGAGAGTGATGTGTGATGCTAGAC AATTCACAGCTTTGAATTTGCGTGAGACCTGCAACTTCGAGGTAAGCGGT CGGGTGCTGTTCGACACCCGTCCCCTCTCTTCTCGCTAGTGCGTTGGGCA TGAGCAATTCCAGCTCGTAATACTGTACGGAATCCACACCAGAAACGGTA GCATTGTCCCTTGCTTATGTTCACCCAGGTAATCAGTCCCATTGATGGAG TTATGAACGAGCACTTCGTGGTATGGATGCGAACGGCTGCTCGGTCAACG TTCCGCAACCTCTACGGACGAATAGAACATGATCTTGTGGCACCAGCAAC ATTAACATTCAACGTCACTGCGAGTGAGTACTATATATCCCGACATTCCA TGCTAAGTTACAGAACTGTGGTCTGCTTTCCCAGTGACAGCACGTGGTCG AAGCCGATAATATTAGATCAAATTCGAACATTTCGAGTGATCCAAAGCAA GGGTGGGATCAATCGTTTCGACCAGGCATGAATGTGATTTGTAACGTTAT AACCTGCTTGCATCCAACTCAAATGCATGCATGAATAGGCTAGGATGTTG ACGTAGATAAATTGAAACGAATATGTTTTTTTGCTGTAGCATCTCTTTTT TGTAACCCCTGCGGGTCTTACTGTCACCGTTAGATGGCGACCCCTGCACA CCACTGATTACCGCGTTTGGCAGCCGCACCAAATGCATGCGTCCCGAGAG AGGATTACGCATAGTGACAACACAAGCAAGTGATGTTTGCAACGGATACC ATCACGTACCCCAAGACTCCGACCGTCCAGAGCATTGTTTGTACCCTCCC CTCTCCACCTTACGGGGTGGAGGTCAGCGCTGGGAGATTATCTCCCTACA TGTATCTACATATATAGCATCATGAGGCAAATTAACCAGTAGAGAAAAAT GTATAATAGTACTGGTGATAGAGACCCAGGGCCACCCTCGTGTCGCTGGG AATTTCCGGTGCCCAATATATTAGATAAAGGCTATAAACTATCGTAAAAG TTGACATCTGACTCGCGCAGAATTGCAAGGTAACTAACGTAACAAATTGT GTTCAATCCGCCGTTCAAGTCTATCAAGTGTTGCGCACAGGTTACGTTTC TGGCGAGTGTATCTGTTTCGTTGCAGAGCGTAGGCGTGTAGCTTGGACCC TTACTTTTTATATTTTTTACACTCCACGTTTTGGTAATTCGTTGATGGGA TGTGCGTTTATAGCGCGCCACAGCTAGTTGTAGTCACTATTGCCGTACAT ACGTGCAGGGATTAGTGATTGTAAGACACTAAATTTTTATGGCGTCTTTA TCCCGGGGCAACATACCCTTGACCTTCTTCCGATCGTGTCAGACTTTTAC GTGGCAGTATTTGGCGGCACGAAAAGCTTAATCTTGGCGACGGAGTCGCC TGTCGGGAATACGAACGCGGTCTTAGGGGGTGCCTTCATAGCGGTTGGAG GAGCATGCCTGATGGCAGGGCTTGTGATATTGTCGAAGTTTCAGGCATCA CCAAGGTCAGTCACATTCGGTGTAAGCAGTGTGATCAAAAGGCAGCTAAC ACTTGTCATCGCTCGCTAGCACTAACAAGTGCAGTGCTGTCAACCCATTG CAGTGATAGATACATTGGCTGATGACGAAGTACCTGTCGTGGGTCTCGTT CGCACCGCCCACAATCAAGTTAGTGGCTCTTGTGAGGCAGGATGGGACAT GGTGCAACCGCTAGGCGTGCAGAGTAACGATATTTTGGTAGCGCAGCATA TGCTGAGAACAACAAGCCAGCCATGTAGCAAGACATCATAGGACACCGAA GACCTGCCAAGTACGACACCCTGGGACAAAGAATTAAAGTACATTCCACA AACCTCAGCAACGAGGACTTGTCCCTTGTTGGTGCACCGTATTTGCAGAG AATTCGCGGATAGTCAATTTTTGGAGACGGTGAGCACGAGTAAACCATGA GCGCGAAACAAGTGCAGGGCCCGCTCCTCAACGATCAGGAACCCGCGGCA TCAATATCCTGCGGACTCTGCAGCTGCGTTCAGCTTTGAGTGGTCCCTTC T
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Coding sequence (CDS) from alignment at H-paniculata_contig3169:337..4587+

>mRNA_H-paniculata_contig3169.8539.1 ID=mRNA_H-paniculata_contig3169.8539.1|Name=mRNA_H-paniculata_contig3169.8539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig3169:337..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCTCCAGTCTTCGTGTACTTCGAGCTCAGCAAATTCTATCAGAA
CCATCGAAGTTACGTCAAGTCTAGGAGCAACAATCAACTGGCCGGCGGCA
TGACTGCTCCAGTCTTCGTGTACTTCGAGCTCAGCAAATTCTATCAGAAC
CATCGAAGTTACGTCAAGTCTAGGAGCAACAATCAACTGGCCGGCGGCGT
TACAGCTTCTGACACCTGCGATCCGCTCACGGGATTGGGTTCAGTCGAAC
TGAATCCGTGTGGGCTGGTGGCGAACAGCATGTTCAACGATATCATCGTC
GTGGCTGCGGCTCCCGACCCTTACGATCCGCTGTCGCCACACGAGTACAT
GGTTGAGACGGATATCTCGTGGGCTAGTGGTTACAGCTTCTGACACCTGC
GATCCGCTCACGGGATTGGGTTCAGTCGAACTGAATCCGTGTGGGCTGGT
GGCGAACAGCATGTTCAACGATATCATCGTCGTGGCTGCGGCTCCCGACC
CTTACGATCCGCTGTCGCCACACGAGTACATGGTTGAGACGGATATCTCG
TGGGCTAGTGATCGTGATGACACATTTGCACAGCCAGATGGTTTTGTTTC
GGTAGAGTGTGCATCTATCAACAGCTGCGAAGGTTGCCTCGGTTCATCGT
CCTACAGTGATTGCTCTAGTCACATAGACGATCGAACAGATCGTGATGAC
ACATTTGCACAGCCAGATGGTTTTGTTTCGGTAGAGTGTGCATCTATCAA
CAGCTGCGAAGGTTGCCTCGGTTCATCGTCCTACAGTGATTGCTCTAGTC
ACATAGACGATCGAACAGGTCTGGAGTACAAGTATTGGTACCCGGAGGAG
TCGTTGACCCAGTATCTTTACGAAACATATCCGGAGGTCTGGAGTACAAG
TATTGGTACCCGGAGGAGTCGTTGACCCAGTATCTTTACGAAACATATCC
GGAGGTAATCAGTCCCATTGATGGAGTTATGAACGAGCACTTCGTGGTAT
GGATGCGAACGGCTGCTCGGTCAACGTTCCGCAACCTCTACGGACGAATA
GAACATGATCTTGTGGCACCAGCAACATTAACATTCAACGTCACTGCGAG
TAATCAGTCCCATTGATGGAGTTATGAACGAGCACTTCGTGGTATGGATG
CGAACGGCTGCTCGGTCAACGTTCCGCAACCTCTACGGACGAATAGAACA
TGATCTTGTGGCACCAGCAACATTAACATTCAACGTCACTGCGAACTTTT
ACGTGGCAGTATTTGGCGGCACGAAAAGCTTAATCTTGGCGACGGAGTCG
CCTGTCGGGAATACGAACGCGGTCTTAGGGGGTGCCTTCATAGCGGTTGG
AGGAGCATGCCTGATGGCAGGGCTTGTGATATTGTCGAAGTTTCAGGCAT
CACCAAGACTTTTACGTGGCAGTATTTGGCGGCACGAAAAGCTTAATCTT
GGCGACGGAGTCGCCTGTCGGGAATACGAACGCGGTCTTAGGGGGTGCCT
TCATAGCGGTTGGAGGAGCATGCCTGATGGCAGGGCTTGTGATATTGTCG
AAGTTTCAGGCATCACCAAGAGAATTCGCGGATAGTCAATTTTTGGAGAC
GGTGAGCACGAGTAAACCATGAAGAATTCGCGGATAGTCAATTTTTGGAG
ACGGTGAGCACGAGTAAACCATGA
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