mRNA_H-paniculata_contig31668.8537.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31668.8537.1
Unique NamemRNA_H-paniculata_contig31668.8537.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A6H5L2M1_9PHAE (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 6.280e-53
Identity = 87/99 (87.88%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            L+ +A+QWRRGTDTMDVWFDSGSSWAGV+KAR+EL YPADLYLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKGYKMSKSLGNTLDP +V
Sbjct:  629 LQGEADQWRRGTDTMDVWFDSGSSWAGVAKAREELDYPADLYLEGSDQHRGWFQSSLLTSVAANGHAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPTEV 727
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A7S1CY54_CYCTE (Isoleucyl-tRNA synthetase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY54_CYCTE)

HSP 1 Score: 179 bits (453), Expect = 2.310e-51
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    4 KSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            K QA++W++GTDTMDVWFDSGSSW GV+K R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKG+KMSKSLGN +DPMQV
Sbjct:  121 KDQADKWKKGTDTMDVWFDSGSSWNGVAKTRDELAYPADIYLEGSDQHRGWFQSSLLTSVAANNQAPYKTVLTHGFVLDEKGFKMSKSLGNVIDPMQV 218
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A8J9WZV3_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9WZV3_PHATR)

HSP 1 Score: 176 bits (445), Expect = 1.850e-50
Identity = 77/99 (77.78%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
             +++A++W++GTDTMDVWFDSGSSWAGV+++R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKG+KMSKSLGN +DP++V
Sbjct:   81 FRAEADKWQKGTDTMDVWFDSGSSWAGVAQSRDELAYPADMYLEGSDQHRGWFQSSLLTSVANNNIAPYKTVLTHGFVLDEKGFKMSKSLGNVVDPLKV 179
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A7S0LI09_9EUKA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LI09_9EUKA)

HSP 1 Score: 177 bits (449), Expect = 1.430e-49
Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            LKS+A +WR+GTDTMDVWFDSGSSW+GV+ +R +L YPADLYLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKGYKMSKSLGN +DP  V
Sbjct:  567 LKSEAARWRKGTDTMDVWFDSGSSWSGVADSRSKLSYPADLYLEGSDQHRGWFQSSLLTSVAANGVAPYKTVLTHGFVLDEKGYKMSKSLGNVIDPRSV 665
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A7S0BWH6_9STRA (Isoleucyl-tRNA synthetase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWH6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.920e-49
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    4 KSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            K++A +W++GTDTMDVWFDSGSSWAGV+K R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+N  APYK VLTHGFVLDEKG+KMSKSLGN + PM +
Sbjct:   67 KAEAHKWKKGTDTMDVWFDSGSSWAGVAKGRDELAYPADVYLEGSDQHRGWFQSSLLTSVAANGQAPYKAVLTHGFVLDEKGFKMSKSLGNVISPMMM 164
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A1Z5JP77_FISSO (Isoleucine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP77_FISSO)

HSP 1 Score: 177 bits (448), Expect = 2.000e-49
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    4 KSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            K +AE+W +GTDTMDVWFDSGSSWAGV+++R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKG+KMSKSLGN +DPMQV
Sbjct:  573 KHEAEKWVKGTDTMDVWFDSGSSWAGVAQSRNELAYPADMYLEGSDQHRGWFQSSLLTSVANNDQAPYKTVLTHGFVLDEKGFKMSKSLGNVVDPMQV 670
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A7S1ZYZ0_9STRA (Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYZ0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.770e-49
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    4 KSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            K +AE+W++GTDTMDVWFDSGSSWAGV+ AR EL YPADLYLEGSDQHRGWFQSSLLTSVA+   APYKTVLTHGFVLDEKGYKMSKSLGN +DP++V
Sbjct:  597 KEEAEKWKKGTDTMDVWFDSGSSWAGVASARDELQYPADLYLEGSDQHRGWFQSSLLTSVAAQGQAPYKTVLTHGFVLDEKGYKMSKSLGNVIDPLKV 694
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A7S2A607_TRICV (Isoleucine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A607_TRICV)

HSP 1 Score: 174 bits (442), Expect = 4.870e-49
Identity = 78/98 (79.59%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    4 KSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            K++A++W++GTDTMDVWFDSGSSWAGV+K R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+   APYKTVLTHGFVLDEKG+KMSKSLGN +DP++V
Sbjct:  280 KNEADKWKKGTDTMDVWFDSGSSWAGVAKGRSELAYPADIYLEGSDQHRGWFQSSLLTSVAAQGKAPYKTVLTHGFVLDEKGFKMSKSLGNVVDPLKV 377
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: B7FRF4_PHATC (Isoleucine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRF4_PHATC)

HSP 1 Score: 176 bits (445), Expect = 5.130e-49
Identity = 77/99 (77.78%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
             +++A++W++GTDTMDVWFDSGSSWAGV+++R EL YPAD+YLEGSDQHRGWFQSSLLTSVA+N  APYKTVLTHGFVLDEKG+KMSKSLGN +DP++V
Sbjct:  584 FRAEADKWQKGTDTMDVWFDSGSSWAGVAQSRDELAYPADMYLEGSDQHRGWFQSSLLTSVANNNIAPYKTVLTHGFVLDEKGFKMSKSLGNVVDPLKV 682
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BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Match: A0A1E7F759_9STRA (Isoleucine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F759_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.240e-49
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHRGWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV 297
            LK++A++W++GTDTMDVWFDSGSSWAGV+  R EL YPAD+YLEGSDQHRGWFQSSLLTSVA N  APYKTVLTHGFVLDEKG+KMSKSLGN +DP+ V
Sbjct:  462 LKAEADKWKKGTDTMDVWFDSGSSWAGVASTRDELAYPADMYLEGSDQHRGWFQSSLLTSVAVNDQAPYKTVLTHGFVLDEKGFKMSKSLGNVIDPLYV 560
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31668.8537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M1_9PHAE6.280e-5387.88Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1CY54_CYCTE2.310e-5182.65Isoleucyl-tRNA synthetase n=1 Tax=Cyclophora tenui... [more]
A0A8J9WZV3_PHATR1.850e-5077.78Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S0LI09_9EUKA1.430e-4981.82Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccoli... [more]
A0A7S0BWH6_9STRA1.920e-4978.57Isoleucyl-tRNA synthetase (Fragment) n=1 Tax=Probo... [more]
A0A1Z5JP77_FISSO2.000e-4982.65Isoleucine--tRNA ligase n=2 Tax=Fistulifera solari... [more]
A0A7S1ZYZ0_9STRA2.770e-4982.65Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwell... [more]
A0A7S2A607_TRICV4.870e-4979.59Isoleucine--tRNA ligase n=1 Tax=Trieres chinensis ... [more]
B7FRF4_PHATC5.130e-4977.78Isoleucine--tRNA ligase n=2 Tax=Phaeodactylum tric... [more]
A0A1E7F759_9STRA8.240e-4979.80Isoleucine--tRNA ligase n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31668contigH-paniculata_contig31668:359..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8.7e-42
Seed eggNOG ortholog2850.Phatr17198
Preferred nameISM1
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K18171
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0070127,GO:0070152,GO:0071704,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XBBT@2836,COG0060@1,KOG0433@2759
EC6.1.1.5
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.0910845-CDS-H-paniculata_contig31668:358..5251622929976.0910845-CDS-H-paniculata_contig31668:358..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31668 359..525 -
1691481094.4273787-CDS-H-paniculata_contig31668:358..5251691481094.4273787-CDS-H-paniculata_contig31668:358..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31668 359..525 -
1622929976.1060302-CDS-H-paniculata_contig31668:1337..14701622929976.1060302-CDS-H-paniculata_contig31668:1337..1470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31668 1338..1470 -
1691481094.4391503-CDS-H-paniculata_contig31668:1337..14701691481094.4391503-CDS-H-paniculata_contig31668:1337..1470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31668 1338..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31668.8537.1prot_H-paniculata_contig31668.8537.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31668 359..1470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31668.8537.1

>prot_H-paniculata_contig31668.8537.1 ID=prot_H-paniculata_contig31668.8537.1|Name=mRNA_H-paniculata_contig31668.8537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
LKSQAEQWRRGTDTMDVWFDSGSSWAGVSKARKELGYPADLYLEGSDQHR
GWFQSSLLTSVASNRCAPYKTVLTHGFVLDEKGYKMSKSLGNTLDPMQV*
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mRNA from alignment at H-paniculata_contig31668:359..1470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31668.8537.1 ID=mRNA_H-paniculata_contig31668.8537.1|Name=mRNA_H-paniculata_contig31668.8537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-paniculata_contig31668:359..1470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGTCTCAGGCGGAACAATGGCGGCGAGGCACGGACACTATGGATGT
CTGGTTTGATTCCGGTTCTTCATGGGCTGGGGTATCAAAAGCCAGGAAGG
AGCTTGGCTACCCCGCGGATTTGTATCTGGAGGGTGAGGAGCACGGTTTT
GGTGATTACCGAGTAGATTAGACGTGAAACTTGGCAAGCTTATTTGCTTT
GTTGTGATATATATATATATATATATATATATATATTTATTTATTTTTTT
GGGGGGGGGGGCGGGGGGGGGTTCCTTAACTAAGAGTGGAGGGATTGTCG
GGGTTTTTTGCCAATAACGTGGTTGAAGTTGGAGTTTTTTTCTCCTGCTT
GATTTTGCAACAGATATTGTTTTGTGCCTGTTTGTGTGTGTGTGTCTCGA
AGTGTTTTTCACGTCGAATGTCATGTACCGTAGGTAAGGATGTGTAGCAA
GTAGTCAAGAAGGGATAGCGCGTCGCTTACTGACTCCGTTTTAACCCCGT
GAAGGTGTGCATATATCCCAGATCTGCTTAAATTTGGCTAAGACAGCCTC
GCGACGCATCGCCCCGGGGGGGGGGGGGGGGGGGGCAGCATCATTACCCG
TTTTTAATACGAAGTGGCTAAGCTTTGCGTTGGAGATTAATTTTTCCATT
TTTTTTTTTGTATCCAATTTTGAGTTAGCTAGCTAGCGACGACGGCCCAC
ATGCTGTTCATCTCTGGCTTGGGTGATGAGCTGCAGCACTGTCTCAGCAG
CGTGTGGGCAGACCTGGAACCCTGCGTTACAAAAGGGCCCTTCAAACTCA
GCCAGTAAGCGACCGCGCTGCCATTACATGACTATTTAAGAGATTTTTGT
AAATTATTCCTGTTTCACAAACACGCTAATGCTCGATGTTGTTCCATGTT
TTCATACCTTTTGCTCTCACCCGCGAATCTCCATGGTTGCTGCAGGGTCT
GACCAACATCGTGGATGGTTCCAGTCTAGTCTCCTCACCTCCGTGGCCTC
GAACAGGTGCGCGCCGTACAAGACGGTGCTCACGCACGGGTTTGTTCTGG
ACGAGAAGGGGTACAAGATGAGCAAGTCTCTGGGAAACACACTCGACCCA
ATGCAGGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31668:359..1470-

>mRNA_H-paniculata_contig31668.8537.1 ID=mRNA_H-paniculata_contig31668.8537.1|Name=mRNA_H-paniculata_contig31668.8537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig31668:359..1470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGTCTCAGGCGGAACAATGGCGGCGAGGCACGGACACTATGGATGT
CTGGTTTGATTCCGGTTCTTCATGGGCTGGGGTATCAAAAGCCAGGAAGG
AGCTTGGCTACCCCGCGGATTTGTATCTGGAGGCTCAAGTCTCAGGCGGA
ACAATGGCGGCGAGGCACGGACACTATGGATGTCTGGTTTGATTCCGGTT
CTTCATGGGCTGGGGTATCAAAAGCCAGGAAGGAGCTTGGCTACCCCGCG
GATTTGTATCTGGAGGGGTCTGACCAACATCGTGGATGGTTCCAGTCTAG
TCTCCTCACCTCCGTGGCCTCGAACAGGTGCGCGCCGTACAAGACGGTGC
TCACGCACGGGTTTGTTCTGGACGAGAAGGGGTACAAGATGAGCAAGTCT
CTGGGAAACACACTCGACCCAATGCAGGTATAGGGTCTGACCAACATCGT
GGATGGTTCCAGTCTAGTCTCCTCACCTCCGTGGCCTCGAACAGGTGCGC
GCCGTACAAGACGGTGCTCACGCACGGGTTTGTTCTGGACGAGAAGGGGT
ACAAGATGAGCAAGTCTCTGGGAAACACACTCGACCCAATGCAGGTATAG
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