mRNA_H-paniculata_contig31633.8530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 189 bits (479), Expect = 2.240e-51 Identity = 99/235 (42.13%), Postives = 142/235 (60.43%), Query Frame = 1
Query: 1 FHAFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKD----TYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
F+ FRR + GDPPA+V P+ V++ T A+ + R R + DK +WL L G+V+ N QA + S M PK+ TYR V D+RAVN + S PMP+LE + ++ A+ + LD+LQGYW M L P+A+EIFTM+ G+Y+P +VPQGVLN T+Y+ GTM IL L C + VDDI W T ++L+ L ++L R + ++ AAHK + + WCGK+
Sbjct: 630 FNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKV 861
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.730e-48 Identity = 103/232 (44.40%), Postives = 137/232 (59.05%), Query Frame = 1
Query: 1 FHAFRRALS-GDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
++AFRR L GDPPA+VEPLRV + AR + RPR + K WL A G+VF N QA + S AMA PKK YR+V+D+RA N V MPN E ++ A + LDLLQ YW+ L P+A+EIFT+ T G+Y P +VPQG+LN T+YF T+ IL GL C + VDD+ W +L+ L ++L+RL+ +Y AAHK F + WCGK+
Sbjct: 738 WNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKV 959
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.590e-38 Identity = 82/236 (34.75%), Postives = 123/236 (52.12%), Query Frame = 1
Query: 7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
+FR DPP V PL+V+V +A+ + +PR S D +LD+H KL + G+VF N ++ + S V KK+ RM D R VN P+P LE + + GA V +D +GYW++ L ++E+FT +T +G+Y PT+VP G + Y G + +I GLLG +DDI +A + EL+ L VL R + + A K + F E+ WCGK+
Sbjct: 32 SFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 267
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.190e-37 Identity = 79/235 (33.62%), Postives = 124/235 (52.77%), Query Frame = 1
Query: 10 FRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
FR DPP V P++V++ DAR R +PRP S + +LD+H L G+V+ N ++ + S V K++ RM D R+VN P + PMP L+ + + GA VF +LD +GYW++ L P ++E+++ VT +G+Y PT+VP G + Y G + +I L+G +DDI +A L+ L VL R + + A K + F E+ WCG++
Sbjct: 22 FRLEFGNDPPVRVTPMQVRLKDDARPVRAQPRPYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTRSVNERTEPMSWPMPVLDVVLGELEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRV 256
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.080e-36 Identity = 79/233 (33.91%), Postives = 126/233 (54.08%), Query Frame = 1
Query: 1 FHAFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAV--PKKDTYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
F +R L DPPA V PL++++ A R + R S +K+ +L+K +KL G V+ N Q+ + A+ V P D YR DYR +N++ P A MP++E G + + D L+G+W++ +RE + +T KGV+ PT+VPQG + +F T+ +L L+GK + +DD+ ++A T EL+ + VL++L K LFR E+ WCG+I
Sbjct: 165 FGGWRLELGNDPPARVPPLKIKLKPTASPYRCKMRQYSPEKSAFLEKFNRKLVDLGCVYENRQSRWRCPALPVKKPNTDDYRQTVDYRPINAITEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPFHENSREYLSYMTNKGVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEIQWCGRI 397
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.710e-36 Identity = 84/235 (35.74%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGK 690
+FR DPP V PL+V+V +A+ + +PR S D +LD+H KL + G+VF N ++ + S V KK+ RM D R VN PMP LE + + GA V LD +GYW++ L ++E+FT +T +G+Y PT+VP G + Y G + +I LLG +DDI +A + EL++ L VL R +V + A K + F E+ WCGK
Sbjct: 67 SFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGK 301
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.830e-35 Identity = 82/236 (34.75%), Postives = 123/236 (52.12%), Query Frame = 1
Query: 7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
+FR DPP V PL+V+V +A+ + +PR S D +LD+H KL + G+VF N ++ + S V KK+ RM D R VN P+P LE + + GA V +D +GYW++ L ++E+FT +T +G+Y PT+VP G + Y G + +I GLLG +DDI +A + EL+ L VL R + + A K + F E+ WCGK+
Sbjct: 505 SFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 740
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.510e-35 Identity = 82/236 (34.75%), Postives = 124/236 (52.54%), Query Frame = 1
Query: 7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
+FR DPP V PL+V+V +A+ + +PR S + +LD+H KL + G+V N ++ + S V KK+ RM D R VN PMP LE + + GA VF LD +GYW++ L ++E+FT +T +G+Y PT+VP G + Y G + +I LLG + +DDI +A + +EL++ L VL R + + A K F E+ WCGK+
Sbjct: 426 SFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKM 661
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.590e-35 Identity = 83/236 (35.17%), Postives = 123/236 (52.12%), Query Frame = 1
Query: 7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
+FR DPP V PL+V+V +A+ + +PR S D +LD+H KL + G+VF N ++ + S V KK+ RM D R VN PMP LE + + GA VF LD +GYW++ L ++E+FT +T +G+Y PT+VP G + Y G + +I LG +DDI +A + EL++ L VL R + + A K + F E+ WCGK+
Sbjct: 334 SFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 569
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3FJD6_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJD6_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.110e-34 Identity = 79/235 (33.62%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 10 FRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
FR DPP V P++V++ DAR R +PR S + +LD+H L G+V+ N ++ + S V K++ RM D +VN P + PMP L+ + G+ GA VF +LD L+GYW++ L P ++E+++ VT +G+Y PT+VP G + Y G + +I L+G +DDI +A L+ L VL R + A K + F E+ WCG++
Sbjct: 243 FRLEFGNDPPVRVAPMQVRLKDDARPVRAQPRRYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTWSVNERTEPMSWPMPVLDVVLGGLEGARVFFVLDWLRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCHGVVEEIFGDLVGDGILAWLDDILGYAENESALLELLDKVLSRCDAYGLKLHAKKCQFFATEVKWCGRV 477 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig31633.8530.1 >prot_H-paniculata_contig31633.8530.1 ID=prot_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp MSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTYRMVADYRback to top mRNA from alignment at H-paniculata_contig31633:525..1217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig31633.8530.1 ID=mRNA_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig31633:525..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig31633:525..1217- >mRNA_H-paniculata_contig31633.8530.1 ID=mRNA_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig31633:525..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |