mRNA_H-paniculata_contig31489.8499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31489.8499.1
Unique NamemRNA_H-paniculata_contig31489.8499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: D8LR60_ECTSI (Lipase domain protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR60_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.680e-21
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISRRFPEIKVTMYNFGSPRVGNR 144
            P+DWH++ TGHSLGGALATLATLD  RR+PE KVTMYNFGSPRVGN+
Sbjct:    5 PEDWHVYITGHSLGGALATLATLDHRRRYPEAKVTMYNFGSPRVGNK 51
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A6H5KT38_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT38_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 7.640e-20
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISRRFPEIKVTMYNFGSPRVGNR 144
            P+DWH++ TGHSLGGALATLATLD  RR+PE KVTMYNFGSPRVGN+
Sbjct:  974 PEDWHVYITGHSLGGALATLATLDHCRRYPEAKVTMYNFGSPRVGNK 1020
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A1S3CDA2_CUCME (uncharacterized protein LOC103499378 isoform X2 n=2 Tax=Cucumis TaxID=3655 RepID=A0A1S3CDA2_CUCME)

HSP 1 Score: 69.7 bits (169), Expect = 1.150e-12
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            P  WH++ TGHSLGGALATL  L++S     R   I VTMYNFGSPRVGNR
Sbjct:  517 PVKWHVYVTGHSLGGALATLLALELSSSQLARHEAITVTMYNFGSPRVGNR 567
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: UPI0005ECAAE4 (uncharacterized protein LOC101204368 isoform X3 n=1 Tax=Cucumis sativus TaxID=3659 RepID=UPI0005ECAAE4)

HSP 1 Score: 69.7 bits (169), Expect = 1.150e-12
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            P  WH++ TGHSLGGALATL  L++S     R   I VTMYNFGSPRVGNR
Sbjct:  654 PVKWHVYVTGHSLGGALATLLALELSSSQLARHEAITVTMYNFGSPRVGNR 704
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A6J1DNK8_MOMCH (uncharacterized protein LOC111022292 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DNK8_MOMCH)

HSP 1 Score: 69.7 bits (169), Expect = 1.150e-12
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            P  WH++ TGHSLGGALATL  L++S     R   I VTMYNFGSPRVGNR
Sbjct:  656 PVKWHVYVTGHSLGGALATLLALELSSSQLARHGAINVTMYNFGSPRVGNR 706
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A2G2ZU42_CAPAN (C2 domain-containing protein n=5 Tax=Capsicum TaxID=4071 RepID=A0A2G2ZU42_CAPAN)

HSP 1 Score: 69.7 bits (169), Expect = 1.150e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LPQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            LP  WH++ TGHSLGGALATL  L++S     +   I+VTMYNFGSPRVGN+
Sbjct:  667 LPNKWHVYVTGHSLGGALATLLALELSSSQLAKRGAIRVTMYNFGSPRVGNK 718
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A0V0IF89_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IF89_SOLCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.180e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 PQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            P  WH++ TGHSLGGALATL  L++S     +   I+VTMYNFGSPRVGN+
Sbjct:  185 PNKWHVYVTGHSLGGALATLLALELSSSQLAKHGAIRVTMYNFGSPRVGNK 235
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: W1NTR8_AMBTC (C2 domain-containing protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=W1NTR8_AMBTC)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LPQDWHIFFTGHSLGGALATLATLDISR----RFPEIKVTMYNFGSPRVGNR 144
            +   WH++ TGHSLGGALATL  L++S     ++  I+VTMYNFGSPRVGN+
Sbjct:  691 MKSSWHVYITGHSLGGALATLLALELSSSQLAKYDAIRVTMYNFGSPRVGNK 742
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A0L0FXE2_9EUKA (Lipase_3 domain-containing protein n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FXE2_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 HIFFTGHSLGGALATLATLDISRRFPEIKVTMYNFGSPRVGNR 144
            H+F TGHSLGG+LATL  LD + RFPE+K T+Y FGSPRVGN+
Sbjct:  351 HVFITGHSLGGSLATLFALDCAIRFPELKSTVYTFGSPRVGNK 393
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BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Match: A0A7S0TMB5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMB5_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-12
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    7 QDWHIFFTGHSLGGALATLATLDISRRFPEIKVTMYNFGSPRVGN 141
             D+ +F TGHSLGGALATL  +D+  R P + VTMYNFGSP+VG+
Sbjct:   38 DDYEVFLTGHSLGGALATLCAVDVRVRMPHVGVTMYNFGSPKVGD 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31489.8499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR60_ECTSI2.680e-2180.85Lipase domain protein, partial n=1 Tax=Ectocarpus ... [more]
A0A6H5KT38_9PHAE7.640e-2080.85C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A1S3CDA2_CUCME1.150e-1264.71uncharacterized protein LOC103499378 isoform X2 n=... [more]
UPI0005ECAAE41.150e-1264.71uncharacterized protein LOC101204368 isoform X3 n=... [more]
A0A6J1DNK8_MOMCH1.150e-1264.71uncharacterized protein LOC111022292 n=1 Tax=Momor... [more]
A0A2G2ZU42_CAPAN1.150e-1261.54C2 domain-containing protein n=5 Tax=Capsicum TaxI... [more]
A0A0V0IF89_SOLCH1.180e-1260.78Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
W1NTR8_AMBTC1.580e-1257.69C2 domain-containing protein n=4 Tax=Amborella tri... [more]
A0A0L0FXE2_9EUKA1.580e-1269.77Lipase_3 domain-containing protein n=2 Tax=Sphaero... [more]
A0A7S0TMB5_HEMAN1.720e-1262.22Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31489contigH-paniculata_contig31489:107..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D8LR60
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.3575814-CDS-H-paniculata_contig31489:106..2531622929970.3575814-CDS-H-paniculata_contig31489:106..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31489 107..253 +
1691481091.8384821-CDS-H-paniculata_contig31489:106..2531691481091.8384821-CDS-H-paniculata_contig31489:106..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31489 107..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31489.8499.1prot_H-paniculata_contig31489.8499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31489 107..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31489.8499.1

>prot_H-paniculata_contig31489.8499.1 ID=prot_H-paniculata_contig31489.8499.1|Name=mRNA_H-paniculata_contig31489.8499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
LPQDWHIFFTGHSLGGALATLATLDISRRFPEIKVTMYNFGSPRVGNR*
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mRNA from alignment at H-paniculata_contig31489:107..253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31489.8499.1 ID=mRNA_H-paniculata_contig31489.8499.1|Name=mRNA_H-paniculata_contig31489.8499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig31489:107..253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCACAGGATTGGCATATCTTTTTCACCGGGCATTCCCTAGGAGGAGC
GCTCGCGACACTGGCTACCCTGGATATTAGCAGGCGTTTTCCGGAGATTA
AGGTCACGATGTATAACTTTGGGAGTCCCCGTGTTGGCAATAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31489:107..253+

>mRNA_H-paniculata_contig31489.8499.1 ID=mRNA_H-paniculata_contig31489.8499.1|Name=mRNA_H-paniculata_contig31489.8499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig31489:107..253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCACAGGATTGGCATATCTTTTTCACCGGGCATTCCCTAGGAGGAGC
GCTCGCGACACTGGCTACCCTGGATATTAGCAGGCGTTTTCCGGAGATTA
AGGTCACGATGTATAACTTTGGGAGTCCCCGTGTTGGCAATAGGTGACTT
CCACAGGATTGGCATATCTTTTTCACCGGGCATTCCCTAGGAGGAGCGCT
CGCGACACTGGCTACCCTGGATATTAGCAGGCGTTTTCCGGAGATTAAGG
TCACGATGTATAACTTTGGGAGTCCCCGTGTTGGCAATAGGTGA
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