mRNA_H-paniculata_contig3146.8494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3146.8494.1
Unique NamemRNA_H-paniculata_contig3146.8494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3146.8494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3146contigH-paniculata_contig3146:939..4091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.501146-CDS-H-paniculata_contig3146:938..9801622929969.501146-CDS-H-paniculata_contig3146:938..980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3146 939..980 -
1691481091.411566-CDS-H-paniculata_contig3146:938..9801691481091.411566-CDS-H-paniculata_contig3146:938..980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3146 939..980 -
1622929969.522444-CDS-H-paniculata_contig3146:3875..40911622929969.522444-CDS-H-paniculata_contig3146:3875..4091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3146 3876..4091 -
1691481091.420425-CDS-H-paniculata_contig3146:3875..40911691481091.420425-CDS-H-paniculata_contig3146:3875..4091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3146 3876..4091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3146.8494.1prot_H-paniculata_contig3146.8494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3146 939..4091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3146.8494.1

>prot_H-paniculata_contig3146.8494.1 ID=prot_H-paniculata_contig3146.8494.1|Name=mRNA_H-paniculata_contig3146.8494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
PSLRSTRRSHPDKKNFHEVSPSTKLLVYGYRDEKFTRNDGTAKIRQRDEK
IIWPVLLQHFQTSTQGVPGSTQTQQGKLRLEPPAE*
back to top

mRNA from alignment at H-paniculata_contig3146:939..4091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3146.8494.1 ID=mRNA_H-paniculata_contig3146.8494.1|Name=mRNA_H-paniculata_contig3146.8494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3153bp|location=Sequence derived from alignment at H-paniculata_contig3146:939..4091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCATTGAGGAGCACGAGGAGATCACATCCTGATAAAAAAAACTTCCA
CGAGGTTTCTCCATCAACGAAACTCTTGGTATACGGGTACAGGGATGAAA
AATTCACCCGAAATGACGGAACTGCAAAGATTCGTCAGCGAGACGAAAAG
ATCATCTGGCCTGTATTACTGCAGCATTTCCAGACGTCCACACAGGGAGT
GCCAGGGTCAACACAGGTTCTGTTGTGGGCTGTTTGGGGGCGTTTTGCAC
TTTTGGGATACCCTTCAGTGTTGAAAATCTTCGTAACAGCTAAACGATCG
CAGCAAGCAACGAAATGATGTTGAGAGGGCCAGACAACAAGGGGCCCCAT
AGAGCAGTTTCGCAACAATCTGTAGAGAACATGATGATAGTTATCTCAAT
AGTATACCACAGGCCACACCATGCGGATGTTGTCTAAATATGAAACCTAA
TTTCAACTTGAACATCTGACGAAACAGGGGTACCCCATAAGCATTACCCA
ACAGTGAAAGCCAGGGCCGATTTTCACAACACCTTCGACTGCTGTTGTGC
CACAAGATAAGAGATCGCTCTTGTCCTCGGATTTGCAACACTTTGGGAGG
CGTTCCTGTTCCTTATGTCAAGAATCATGTCACCTCTGAAAACAATACTA
TCCCTTTTCCTGTTGGAGGACATGTGGACACTCCTGTGCTATAGGCAAAG
ATTCCCACAAGACCTGTTTTCCCTACGTTTCTCACTTGTGGTCTTGGACT
GTCAGACGTGTATGGTATGTCGGGATTCGCTGCCCTGATACGAGCACTGG
GTGTCGTGGATATAGGCCCTGTTTCGACTACGAAGCAGCGACAAAGATAT
GGCAGTAACGATTCGAGTACAAACGACGACGGTGTCCTAGTTGTTGAGAG
CGAGGATCGAACAAGTGAACGGAGCTTCGGGGACACAGACAGCCCGGCGC
AGTTCGGTGATCTCTGTGATTTCGCAGTTCAGTTTTTGCCAGAGACTGAG
CTATTGGAACCAGACGTGACTAGCAGTAAACCGTGCTTTAGAGATGAAAC
GAAGTCAAAAGGTATGGCGCATTTGAGTATCTGCAGGACGCACGGCAAAA
GCACCTGATGATGAAATTCTGGGAGGGGCTTATCGCCGATGTTATTTTTT
GGGGCGGACTCATGGGCAAGAGCGCAATACATACAATATTCGTAGACCGC
TACAATTAATACACGAATTCGTACGATTGTGGTTGAGATAGACGCCACGC
ATGTATTGAGACGCAGGCAGCGAGAAGTAGTTAATGCGGTTGGGGTTTTG
AAAGGGGAGCGCTGAGGAGTCAGCTGATGGTGCGGACGTCCTGTACGTGT
TTACAGATGTATGATGTGATGATAAAGGACGTTGGGACAGGTCTCTTATA
CTCTGCACAATTGTGTCTTCACCTGCGGTTGATGATTTAGAGAGGTGGCG
TCAAAAGGAGTTCGTGAAGTATTCGCGCCCCGGACAAATATGAATACAAG
ACACAAATAAATACGAGAAATATGGAATGAATATTGTATCTGTTTGAATA
GGTTCACATAACATGTGACGCGAATAATATCCAATGTACTCGATATACCA
TGGAGCATAGAAAGCTCGGGGAGATAGAGTATTCAATGTGTACAGTACCA
TCCAGATAATAAACAGGGCCTGCATATATGACTGTTCGCTGGGTATACGA
CCACCTGGTGACCATCTGTAGAGTGACCATTCATTGACTTGTAATCGAAT
AATACGTGTCTACCCAAAACAAATAATAATAGTTCGAGATAGTTGTGAAT
GCTCCAGTCGTATTTGTCCGGGGGGTGGAAGCATTACATCAGTAGACGAT
GATAGCCCTCCGCCTGTACTTGAAGCAACAGTGATGTGATTTCCTGTGTT
TTTTACTGAGCAGGCAGCGCATCCCCCGTATCCGTTGGCATCACCCCCTA
TTCCGTATAAGGTTGTCTTGGGAAAAGCCCGTCCGTGAGCTTGTTACGCA
ATAGCACTTTCAGCAGCTATTGCACAACAGCAAGTAGCTGCAGTAGTTTC
GTAACAGCGATAGAAATCGCTGTTATGATACAGCACTCTGTATTCCAAGC
AGCCATCGATAATTGTAGATACACCGAAGAAGTGCAGGCGTCCGACTGTC
GCTACGCTCTCCTCTGTACTTTCTAATATACCTAATAAGTTGTGATTCCC
ATCAAACAGCTGTCGTCAACCCTTGTTCGGTAACAAGTTGTGGTGTTGTG
GTTATTGCAACAGCCGTTCCGAAAGACTGTTTTGGGAACAAGCCGACCCG
GAGCTTATTACGCAACAGTACTTTTAGCAGCTGTTGCGCAATAGCGAATA
GGTGCAGTAGGTTCGTAACTGCGAGATAAACCGCCTGTATTCCAAGCAAC
TTGTGGCGTTCGTAGACCTTCTGGAAGGCGTCCGGCTTTCGTTGTGCCCT
CGTCTCTACTTATAAATAAGGCAACAAAGAGGAACACATACGCCGCGAGG
GTACAACTTTAGAATGTCGTCGACACTGACGGACCCTCGGCGTGCTCAAC
AGCTCATATGTAAAGTTCAGCCGTCGCGCACAATAGTACCTAAACGAAAC
AGAAATAAACCTCTTGGAGAGAAATTGTACAAAACAAAGAAAACATTTAT
CTTGCTTCGCATTGTATATTAATACGCATGATTACTGTACAACTAAAAGT
AGAAGCCGGCAGGTCCGTGGATGACGAAACGTCTTATGGCGCAGCGCTGA
AACTGCTCTCGTACCGTCGCGAAACTAACCTCCAGTGACCTTTCTCCTCA
CTTGAACCGTTGACAGTCTCGTAGCCTGAAGAAAGAAGGGAATTTACTAC
GGTTGTAGTGGCATGTACCATCGGCATAAGCCGTGCTGTTACGCGCAATG
TGCCTTATGCCAATTTTACACTCCTCGTATGCAGCCTATTCGCGACCTGA
TATATGACAGTCGTGTATGGCTCTCCTCTTCATCCCCGCCAGCACCGATG
AAGTCGCTCGCATCCTCGAAATCGTTACTCACGTTCAAAGTTAACCCCAC
CCATTGCATTTCCACACCCCGGACGTTTGCTCCACTTCCCTCCCGATCGT
TCTCTTCCCAGACCCAGCAAGGAAAGCTACGGCTTGAGCCACCAGCCGAG
TAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3146:939..4091-

>mRNA_H-paniculata_contig3146.8494.1 ID=mRNA_H-paniculata_contig3146.8494.1|Name=mRNA_H-paniculata_contig3146.8494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig3146:939..4091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCATTGAGGAGCACGAGGAGATCACATCCTGATAAAAAAAACTTCCA
CGAGGTTTCTCCATCAACGAAACTCTTGGTATACGGGTACAGGGATGAAA
AATTCACCCGAAATGACGGAACTGCAAAGATTCGTCAGCGAGACGAAAAG
ATCATCTGGCCTGTATTACTGCAGCATTTCCAGACGTCCACACAGGGAGT
GCCAGGGTCAACACAGCCATCATTGAGGAGCACGAGGAGATCACATCCTG
ATAAAAAAAACTTCCACGAGGTTTCTCCATCAACGAAACTCTTGGTATAC
GGGTACAGGGATGAAAAATTCACCCGAAATGACGGAACTGCAAAGATTCG
TCAGCGAGACGAAAAGATCATCTGGCCTGTATTACTGCAGCATTTCCAGA
CGTCCACACAGGGAGTGCCAGGGTCAACACAGACCCAGCAAGGAAAGCTA
CGGCTTGAGCCACCAGCCGAGTAGACCCAGCAAGGAAAGCTACGGCTTGA
GCCACCAGCCGAGTAG
back to top